CX290704
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX290704 vs. ExPASy Swiss-Prot
Match: RLMN_PELCD (Ribosomal RNA large subunit methyltransferase N OS=Pelobacter carbinolicus (strain DSM 2380 / Gra Bd 1) GN=rlmN PE=3 SV=1) HSP 1 Score: 212.231 bits (539), Expect = 2.159e-54 Identity = 110/231 (47.62%), Postives = 149/231 (64.50%), Query Frame = 1 Query: 16 PCNRGRTTVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFARRLLSSEVGSITNVVFMGMGEPLHKVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLRE-ELHFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLR 705 P + R T+C+S+QVGCAM C FC+TG GL R+LT EIV Q A G + N+V MGMGEPLH ++NV+KA I+ QGL +SPRKVT+ST+GLVPQ+++ LAVSLNATTDEVRN +MP+N++Y L L+ R+ LH K ++ FEY+++ VNDS DA+RL+ L+ GI K+N+I FN H S+F T+E++ F+ L G R Sbjct: 104 PMDDNRATLCISTQVGCAMGCVFCHTGSFGLVRNLTPGEIVNQVCAALA-----DGPVNNIVLMGMGEPLHNLDNVVKALQILYMPQGLDYSPRKVTLSTAGLVPQMQELGKRVRVNLAVSLNATTDEVRNRLMPVNQRYPLQQLMAACRQYPLHAKK--RITFEYILIRDVNDSDQDARRLVKLLHGIKAKVNIIPFNEHSASEFRAPTEERISRFQGYLLDHGMVAIRR 327
BLAST of CX290704 vs. ExPASy Swiss-Prot
Match: RLMN_GEOSL (Ribosomal RNA large subunit methyltransferase N OS=Geobacter sulfurreducens GN=rlmN PE=3 SV=1) HSP 1 Score: 211.46 bits (537), Expect = 3.682e-54 Identity = 112/225 (49.78%), Postives = 145/225 (64.44%), Query Frame = 1 Query: 31 RTTVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFARRLLSSEVGSITNVVFMGMGEPLHKVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLR 705 R T+C+SSQVGCAM C+FC TG L R+LT AEIV Q +R + + N+VFMGMGEPL ++NVI+A IM+H+ GL FS R++TVST+GLVP++++ LAVSLNATTDE+R+ IMPINRKY L +L++ R K+ EYV+L GVND+ DDAKRL+ L+ IP KINLI FN H G F + + + F L TV R Sbjct: 102 RNTLCISSQVGCAMACEFCLTGTFRLTRNLTTAEIVNQVCAVQRDVP-----VRNIVFMGMGEPLANLDNVIRALQIMLHDDGLQFSTRRITVSTAGLVPEMERLGRSVTVNLAVSLNATTDELRDRIMPINRKYPLAVLLDACR-RFPLPGRRKITIEYVLLGGVNDTLDDAKRLVRLLSDIPSKINLIPFNEHEGCSFRSPSQDAIDRFHRYLLDKHFTVITR 320
BLAST of CX290704 vs. ExPASy Swiss-Prot
Match: RLMN_GEOMG (Ribosomal RNA large subunit methyltransferase N OS=Geobacter metallireducens (strain GS-15 / ATCC 53774 / DSM 7210) GN=rlmN PE=3 SV=1) HSP 1 Score: 210.305 bits (534), Expect = 8.202e-54 Identity = 114/225 (50.67%), Postives = 145/225 (64.44%), Query Frame = 1 Query: 31 RTTVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFARRLLSSEVGSITNVVFMGMGEPLHKVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLR 705 RTT+C+SSQVGCAM C+FC TG L R+LTA EIV Q RR + + N+VFMGMGEPL ++NV+KA I++H+ GL FS R+VTVSTSGLVP++++ E LAVSLNATTDEVR+ IMP+NR+Y L LL++ R K+ EYVM+ G+NDS +DAKRL+ L+ I KINLI FN H G F + F + L TV R Sbjct: 103 RTTLCISSQVGCAMACEFCLTGTFRLTRNLTAGEIVNQICAVRRDVP-----VRNIVFMGMGEPLANLDNVVKALKIILHDDGLQFSTRRVTVSTSGLVPEMERLGREVTVNLAVSLNATTDEVRDRIMPVNRRYPLRLLLDACR-SYPLPGRRKITIEYVMIKGLNDSLEDAKRLVKLLSDISSKINLIPFNEHDGCSFKSPDQGAIDVFHSYLLSKHFTVITR 321
BLAST of CX290704 vs. ExPASy Swiss-Prot
Match: RLMN_ANADF (Ribosomal RNA large subunit methyltransferase N OS=Anaeromyxobacter sp. (strain Fw109-5) GN=rlmN PE=3 SV=1) HSP 1 Score: 204.527 bits (519), Expect = 4.501e-52 Identity = 112/231 (48.48%), Postives = 150/231 (64.94%), Query Frame = 1 Query: 31 RTTVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFARRLLSSEVGS------ITNVVFMGMGEPLHKVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLR 705 R T+CVSSQVGCA+ C FC TG MGL R+LT EIVEQ A R + E+G +TN+VFMGMGEPL ++ A ++++ E G +FS R VTVSTSGLVP +++ E+ LA+SLNATTD R+ +MPINR+Y L L+E R +N ++ FEYV+L GVNDS +DA RL LV+GIP K+NLI +N + G + E+++EF+ LA T +R Sbjct: 111 RRTLCVSSQVGCAVGCTFCLTGTMGLARNLTPGEIVEQVHRANRRIV-ELGEGQGPRPLTNLVFMGMGEPLANYRSLKVALDLLLSEDGPNFSHRHVTVSTSGLVPMIRKLGEETPVKLAISLNATTDAQRDALMPINRRYPLAQLLEACR-SFPIRNGRRITFEYVLLGGVNDSLEDAVRLARLVRGIPTKVNLIPYNANPGLPYRAPAPERVVEFQETLAARNLTAVVR 339
BLAST of CX290704 vs. ExPASy Swiss-Prot
Match: RLMN2_MYXXD (Ribosomal RNA large subunit methyltransferase N 2 OS=Myxococcus xanthus (strain DK 1622) GN=rlmN2 PE=3 SV=1) HSP 1 Score: 203.756 bits (517), Expect = 7.677e-52 Identity = 108/230 (46.96%), Postives = 151/230 (65.65%), Query Frame = 1 Query: 31 RTTVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFARRLLSSEVGS-----ITNVVFMGMGEPLHKVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLR 705 R T+CVS+QVGCAM C FC TG MGLKR+LT +EIV Q R + G ++N+VFMGMGEPLH EN+ A +I+ E G +FS R +TVST GLVP +++F E++ LA+SLNA+TDE R+ MP+NRK+ + L++ R + + ++ FEYV++ G ND+ +DA RLI L++GIP K+NLI +N + G F T +E+ EFR ILA ++R Sbjct: 122 RRTLCVSTQVGCAMACGFCMTGTMGLKRNLTPSEIVAQVHAVNREVRKNEGHETLRPLSNLVFMGMGEPLHNFENLKTALSILQSEDGPNFSHRHITVSTVGLVPMIERFGKETDVKLAISLNASTDEQRSKTMPVNRKWNIAALLDACR-KFPLRQGRRITFEYVLIKGFNDADEDAHRLIELLKGIPVKVNLIPYNENPGLGFHTTGEERAEEFRAILADGHVAAYIR 350
BLAST of CX290704 vs. ExPASy Swiss-Prot
Match: RLMN_ROSDO (Ribosomal RNA large subunit methyltransferase N OS=Roseobacter denitrificans (strain ATCC 33942 / OCh 114) GN=rlmN PE=3 SV=1) HSP 1 Score: 203.371 bits (516), Expect = 1.003e-51 Identity = 105/231 (45.45%), Postives = 155/231 (67.10%), Query Frame = 1 Query: 22 NRGRTTVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFARRLLSS--EVGS-------ITNVVFMGMGEPLHKVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCGSQFTPTTDEKMIEFRNILAGAG 687 + GR T+CVSSQVGC + C FC+TG L R+LTAAEI+ Q + AR L E+G+ ++N+V MGMGEPL+ ENV A I + +G+ S R++T+STSG+VP++ + E C LAVS +ATTD+VR+ ++PIN+++ + +L+E LR N+ ++ FEYVML GVNDS +DA+RL+ L+ GIP KINLI FN G+ + +++ ++ F +I+ AG Sbjct: 121 DEGRGTLCVSSQVGCTLTCSFCHTGTQKLVRNLTAAEIIGQVMVARDDLGEWPEIGAPKDETRLLSNIVLMGMGEPLYNFENVRDAMKIAMDPEGIQLSRRRITLSTSGVVPEIARTAVEIGCQLAVSFHATTDDVRDTLVPINKRWNIEVLLEALRAYPKVSNSERITFEYVMLHGVNDSDEDARRLVKLIDGIPAKINLIPFNEWPGAPYKRSSNNRIRAFADIIYKAG 351
BLAST of CX290704 vs. ExPASy Swiss-Prot
Match: RLMN_RHOSK (Ribosomal RNA large subunit methyltransferase N OS=Rhodobacter sphaeroides (strain KD131 / KCTC 12085) GN=rlmN PE=3 SV=1) HSP 1 Score: 203.371 bits (516), Expect = 1.003e-51 Identity = 104/229 (45.41%), Postives = 151/229 (65.94%), Query Frame = 1 Query: 28 GRTTVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFARRLLSS---------EVGSITNVVFMGMGEPLHKVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCGSQFTPTTDEKMIEFRNILAGAG 687 GR T+CVSSQVGC + C FC+TG L R+LTAAEIV Q + R L E ++N+V MGMGEPL+ ENV A +++ +GL S R++T+STSG+VP++ + E C LA+S +ATTDEVR+ ++PIN+++ + L+++LR+ N+ ++ FEYVML GVND+ DA+RL+ L+ GIP KINLI FN G+ + +T E++ F +I+ AG Sbjct: 124 GRGTLCVSSQVGCTLTCSFCHTGTQKLVRNLTAAEIVGQLMLVRDDLGEWPERGAPKDETRLVSNLVLMGMGEPLYNFENVRNAMKVVMDGEGLSLSRRRITLSTSGVVPEIARTAEEIGCQLAISFHATTDEVRDILVPINKRWNIRTLLDSLRDYPRLSNSERITFEYVMLDGVNDTDADARRLVKLISGIPSKINLIPFNEWPGAPYRRSTPERIAAFADIIYKAG 352
BLAST of CX290704 vs. ExPASy Swiss-Prot
Match: RLMN_RHOS4 (Ribosomal RNA large subunit methyltransferase N OS=Rhodobacter sphaeroides (strain ATCC 17023 / 2.4.1 / NCIB 8253 / DSM 158) GN=rlmN PE=3 SV=1) HSP 1 Score: 203.371 bits (516), Expect = 1.003e-51 Identity = 104/229 (45.41%), Postives = 151/229 (65.94%), Query Frame = 1 Query: 28 GRTTVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFARRLLSS---------EVGSITNVVFMGMGEPLHKVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCGSQFTPTTDEKMIEFRNILAGAG 687 GR T+CVSSQVGC + C FC+TG L R+LTAAEIV Q + R L E ++N+V MGMGEPL+ ENV A +++ +GL S R++T+STSG+VP++ + E C LA+S +ATTDEVR+ ++PIN+++ + L+++LR+ N+ ++ FEYVML GVND+ DA+RL+ L+ GIP KINLI FN G+ + +T E++ F +I+ AG Sbjct: 124 GRGTLCVSSQVGCTLTCSFCHTGTQKLVRNLTAAEIVGQLMLVRDDLGEWPERGAPKDETRLVSNLVLMGMGEPLYNFENVRNAMKVVMDGEGLSLSRRRITLSTSGVVPEIARTAEEIGCQLAISFHATTDEVRDILVPINKRWNIRTLLDSLRDYPRLSNSERITFEYVMLDGVNDTDADARRLVKLISGIPSKINLIPFNEWPGAPYRRSTPERIAAFADIIYKAG 352
BLAST of CX290704 vs. ExPASy Swiss-Prot
Match: RLMN_RHOS1 (Ribosomal RNA large subunit methyltransferase N OS=Rhodobacter sphaeroides (strain ATCC 17029 / ATH 2.4.9) GN=rlmN PE=3 SV=1) HSP 1 Score: 203.371 bits (516), Expect = 1.003e-51 Identity = 104/229 (45.41%), Postives = 151/229 (65.94%), Query Frame = 1 Query: 28 GRTTVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFARRLLSS---------EVGSITNVVFMGMGEPLHKVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCGSQFTPTTDEKMIEFRNILAGAG 687 GR T+CVSSQVGC + C FC+TG L R+LTAAEIV Q + R L E ++N+V MGMGEPL+ ENV A +++ +GL S R++T+STSG+VP++ + E C LA+S +ATTDEVR+ ++PIN+++ + L+++LR+ N+ ++ FEYVML GVND+ DA+RL+ L+ GIP KINLI FN G+ + +T E++ F +I+ AG Sbjct: 124 GRGTLCVSSQVGCTLTCSFCHTGTQKLVRNLTAAEIVGQLMLVRDDLGEWPERGAPKDETRLVSNLVLMGMGEPLYNFENVRNAMKVVMDGEGLSLSRRRITLSTSGVVPEIARTAEEIGCQLAISFHATTDEVRDILVPINKRWNIRTLLDSLRDYPRLSNSERITFEYVMLDGVNDTDADARRLVKLISGIPSKINLIPFNEWPGAPYRRSTPERIAAFADIIYKAG 352
BLAST of CX290704 vs. ExPASy Swiss-Prot
Match: RLMN_RHOS5 (Ribosomal RNA large subunit methyltransferase N OS=Rhodobacter sphaeroides (strain ATCC 17025 / ATH 2.4.3) GN=rlmN PE=3 SV=1) HSP 1 Score: 202.986 bits (515), Expect = 1.310e-51 Identity = 103/229 (44.98%), Postives = 150/229 (65.50%), Query Frame = 1 Query: 28 GRTTVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFARRLLSS---------EVGSITNVVFMGMGEPLHKVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCGSQFTPTTDEKMIEFRNILAGAG 687 GR T+CVSSQVGC + C FC+TG L R+LTA EIV Q + R L E ++N+V MGMGEPL+ ENV A +++ +GL S R++T+STSG+VP++ + E C LA+S +ATTDEVR+ ++PIN+++ + L+++LR+ N+ ++ FEYVML G+NDS DA+RL+ L+ GIP KINLI FN G+ + +T E++ F +I+ AG Sbjct: 124 GRGTLCVSSQVGCTLTCSFCHTGTQKLVRNLTAGEIVGQVMLVRDDLGEWPERGAPKDETRLVSNLVLMGMGEPLYNFENVRNAMKVVMDGEGLSLSRRRITLSTSGVVPEIARTAEEIGCQLAISFHATTDEVRDILVPINKRWNIRTLLDSLRDYPRLSNSERITFEYVMLDGINDSDADARRLVKLISGIPSKINLIPFNEWPGAPYRRSTPERIAAFADIIYKAG 352 The following BLAST results are available for this feature:
BLAST of CX290704 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >CX290704 ID=CX290704; Name=CX290704; organism=Citrus clementina; type=EST; length=706bpback to top |