CX290704

Overview
NameCX290704
Unique NameCX290704
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length706
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX290704 vs. ExPASy Swiss-Prot
Match: RLMN_PELCD (Ribosomal RNA large subunit methyltransferase N OS=Pelobacter carbinolicus (strain DSM 2380 / Gra Bd 1) GN=rlmN PE=3 SV=1)

HSP 1 Score: 212.231 bits (539), Expect = 2.159e-54
Identity = 110/231 (47.62%), Postives = 149/231 (64.50%), Query Frame = 1
Query:   16 PCNRGRTTVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFARRLLSSEVGSITNVVFMGMGEPLHKVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLRE-ELHFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLR 705
            P +  R T+C+S+QVGCAM C FC+TG  GL R+LT  EIV Q   A        G + N+V MGMGEPLH ++NV+KA  I+   QGL +SPRKVT+ST+GLVPQ+++        LAVSLNATTDEVRN +MP+N++Y L  L+   R+  LH K   ++ FEY+++  VNDS  DA+RL+ L+ GI  K+N+I FN H  S+F   T+E++  F+  L   G     R
Sbjct:  104 PMDDNRATLCISTQVGCAMGCVFCHTGSFGLVRNLTPGEIVNQVCAALA-----DGPVNNIVLMGMGEPLHNLDNVVKALQILYMPQGLDYSPRKVTLSTAGLVPQMQELGKRVRVNLAVSLNATTDEVRNRLMPVNQRYPLQQLMAACRQYPLHAKK--RITFEYILIRDVNDSDQDARRLVKLLHGIKAKVNIIPFNEHSASEFRAPTEERISRFQGYLLDHGMVAIRR 327          
BLAST of CX290704 vs. ExPASy Swiss-Prot
Match: RLMN_GEOSL (Ribosomal RNA large subunit methyltransferase N OS=Geobacter sulfurreducens GN=rlmN PE=3 SV=1)

HSP 1 Score: 211.46 bits (537), Expect = 3.682e-54
Identity = 112/225 (49.78%), Postives = 145/225 (64.44%), Query Frame = 1
Query:   31 RTTVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFARRLLSSEVGSITNVVFMGMGEPLHKVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLR 705
            R T+C+SSQVGCAM C+FC TG   L R+LT AEIV Q    +R +      + N+VFMGMGEPL  ++NVI+A  IM+H+ GL FS R++TVST+GLVP++++        LAVSLNATTDE+R+ IMPINRKY L +L++  R         K+  EYV+L GVND+ DDAKRL+ L+  IP KINLI FN H G  F   + + +  F   L     TV  R
Sbjct:  102 RNTLCISSQVGCAMACEFCLTGTFRLTRNLTTAEIVNQVCAVQRDVP-----VRNIVFMGMGEPLANLDNVIRALQIMLHDDGLQFSTRRITVSTAGLVPEMERLGRSVTVNLAVSLNATTDELRDRIMPINRKYPLAVLLDACR-RFPLPGRRKITIEYVLLGGVNDTLDDAKRLVRLLSDIPSKINLIPFNEHEGCSFRSPSQDAIDRFHRYLLDKHFTVITR 320          
BLAST of CX290704 vs. ExPASy Swiss-Prot
Match: RLMN_GEOMG (Ribosomal RNA large subunit methyltransferase N OS=Geobacter metallireducens (strain GS-15 / ATCC 53774 / DSM 7210) GN=rlmN PE=3 SV=1)

HSP 1 Score: 210.305 bits (534), Expect = 8.202e-54
Identity = 114/225 (50.67%), Postives = 145/225 (64.44%), Query Frame = 1
Query:   31 RTTVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFARRLLSSEVGSITNVVFMGMGEPLHKVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLR 705
            RTT+C+SSQVGCAM C+FC TG   L R+LTA EIV Q    RR +      + N+VFMGMGEPL  ++NV+KA  I++H+ GL FS R+VTVSTSGLVP++++   E    LAVSLNATTDEVR+ IMP+NR+Y L LL++  R         K+  EYVM+ G+NDS +DAKRL+ L+  I  KINLI FN H G  F       +  F + L     TV  R
Sbjct:  103 RTTLCISSQVGCAMACEFCLTGTFRLTRNLTAGEIVNQICAVRRDVP-----VRNIVFMGMGEPLANLDNVVKALKIILHDDGLQFSTRRVTVSTSGLVPEMERLGREVTVNLAVSLNATTDEVRDRIMPVNRRYPLRLLLDACR-SYPLPGRRKITIEYVMIKGLNDSLEDAKRLVKLLSDISSKINLIPFNEHDGCSFKSPDQGAIDVFHSYLLSKHFTVITR 321          
BLAST of CX290704 vs. ExPASy Swiss-Prot
Match: RLMN_ANADF (Ribosomal RNA large subunit methyltransferase N OS=Anaeromyxobacter sp. (strain Fw109-5) GN=rlmN PE=3 SV=1)

HSP 1 Score: 204.527 bits (519), Expect = 4.501e-52
Identity = 112/231 (48.48%), Postives = 150/231 (64.94%), Query Frame = 1
Query:   31 RTTVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFARRLLSSEVGS------ITNVVFMGMGEPLHKVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLR 705
            R T+CVSSQVGCA+ C FC TG MGL R+LT  EIVEQ   A R +  E+G       +TN+VFMGMGEPL    ++  A ++++ E G +FS R VTVSTSGLVP +++   E+   LA+SLNATTD  R+ +MPINR+Y L  L+E  R     +N  ++ FEYV+L GVNDS +DA RL  LV+GIP K+NLI +N + G  +     E+++EF+  LA    T  +R
Sbjct:  111 RRTLCVSSQVGCAVGCTFCLTGTMGLARNLTPGEIVEQVHRANRRIV-ELGEGQGPRPLTNLVFMGMGEPLANYRSLKVALDLLLSEDGPNFSHRHVTVSTSGLVPMIRKLGEETPVKLAISLNATTDAQRDALMPINRRYPLAQLLEACR-SFPIRNGRRITFEYVLLGGVNDSLEDAVRLARLVRGIPTKVNLIPYNANPGLPYRAPAPERVVEFQETLAARNLTAVVR 339          
BLAST of CX290704 vs. ExPASy Swiss-Prot
Match: RLMN2_MYXXD (Ribosomal RNA large subunit methyltransferase N 2 OS=Myxococcus xanthus (strain DK 1622) GN=rlmN2 PE=3 SV=1)

HSP 1 Score: 203.756 bits (517), Expect = 7.677e-52
Identity = 108/230 (46.96%), Postives = 151/230 (65.65%), Query Frame = 1
Query:   31 RTTVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFARRLLSSEVGS-----ITNVVFMGMGEPLHKVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLR 705
            R T+CVS+QVGCAM C FC TG MGLKR+LT +EIV Q     R +    G      ++N+VFMGMGEPLH  EN+  A +I+  E G +FS R +TVST GLVP +++F  E++  LA+SLNA+TDE R+  MP+NRK+ +  L++  R +   +   ++ FEYV++ G ND+ +DA RLI L++GIP K+NLI +N + G  F  T +E+  EFR ILA      ++R
Sbjct:  122 RRTLCVSTQVGCAMACGFCMTGTMGLKRNLTPSEIVAQVHAVNREVRKNEGHETLRPLSNLVFMGMGEPLHNFENLKTALSILQSEDGPNFSHRHITVSTVGLVPMIERFGKETDVKLAISLNASTDEQRSKTMPVNRKWNIAALLDACR-KFPLRQGRRITFEYVLIKGFNDADEDAHRLIELLKGIPVKVNLIPYNENPGLGFHTTGEERAEEFRAILADGHVAAYIR 350          
BLAST of CX290704 vs. ExPASy Swiss-Prot
Match: RLMN_ROSDO (Ribosomal RNA large subunit methyltransferase N OS=Roseobacter denitrificans (strain ATCC 33942 / OCh 114) GN=rlmN PE=3 SV=1)

HSP 1 Score: 203.371 bits (516), Expect = 1.003e-51
Identity = 105/231 (45.45%), Postives = 155/231 (67.10%), Query Frame = 1
Query:   22 NRGRTTVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFARRLLSS--EVGS-------ITNVVFMGMGEPLHKVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCGSQFTPTTDEKMIEFRNILAGAG 687
            + GR T+CVSSQVGC + C FC+TG   L R+LTAAEI+ Q + AR  L    E+G+       ++N+V MGMGEPL+  ENV  A  I +  +G+  S R++T+STSG+VP++ +   E  C LAVS +ATTD+VR+ ++PIN+++ + +L+E LR      N+ ++ FEYVML GVNDS +DA+RL+ L+ GIP KINLI FN   G+ +  +++ ++  F +I+  AG
Sbjct:  121 DEGRGTLCVSSQVGCTLTCSFCHTGTQKLVRNLTAAEIIGQVMVARDDLGEWPEIGAPKDETRLLSNIVLMGMGEPLYNFENVRDAMKIAMDPEGIQLSRRRITLSTSGVVPEIARTAVEIGCQLAVSFHATTDDVRDTLVPINKRWNIEVLLEALRAYPKVSNSERITFEYVMLHGVNDSDEDARRLVKLIDGIPAKINLIPFNEWPGAPYKRSSNNRIRAFADIIYKAG 351          
BLAST of CX290704 vs. ExPASy Swiss-Prot
Match: RLMN_RHOSK (Ribosomal RNA large subunit methyltransferase N OS=Rhodobacter sphaeroides (strain KD131 / KCTC 12085) GN=rlmN PE=3 SV=1)

HSP 1 Score: 203.371 bits (516), Expect = 1.003e-51
Identity = 104/229 (45.41%), Postives = 151/229 (65.94%), Query Frame = 1
Query:   28 GRTTVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFARRLLSS---------EVGSITNVVFMGMGEPLHKVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCGSQFTPTTDEKMIEFRNILAGAG 687
            GR T+CVSSQVGC + C FC+TG   L R+LTAAEIV Q +  R  L           E   ++N+V MGMGEPL+  ENV  A  +++  +GL  S R++T+STSG+VP++ +   E  C LA+S +ATTDEVR+ ++PIN+++ +  L+++LR+     N+ ++ FEYVML GVND+  DA+RL+ L+ GIP KINLI FN   G+ +  +T E++  F +I+  AG
Sbjct:  124 GRGTLCVSSQVGCTLTCSFCHTGTQKLVRNLTAAEIVGQLMLVRDDLGEWPERGAPKDETRLVSNLVLMGMGEPLYNFENVRNAMKVVMDGEGLSLSRRRITLSTSGVVPEIARTAEEIGCQLAISFHATTDEVRDILVPINKRWNIRTLLDSLRDYPRLSNSERITFEYVMLDGVNDTDADARRLVKLISGIPSKINLIPFNEWPGAPYRRSTPERIAAFADIIYKAG 352          
BLAST of CX290704 vs. ExPASy Swiss-Prot
Match: RLMN_RHOS4 (Ribosomal RNA large subunit methyltransferase N OS=Rhodobacter sphaeroides (strain ATCC 17023 / 2.4.1 / NCIB 8253 / DSM 158) GN=rlmN PE=3 SV=1)

HSP 1 Score: 203.371 bits (516), Expect = 1.003e-51
Identity = 104/229 (45.41%), Postives = 151/229 (65.94%), Query Frame = 1
Query:   28 GRTTVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFARRLLSS---------EVGSITNVVFMGMGEPLHKVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCGSQFTPTTDEKMIEFRNILAGAG 687
            GR T+CVSSQVGC + C FC+TG   L R+LTAAEIV Q +  R  L           E   ++N+V MGMGEPL+  ENV  A  +++  +GL  S R++T+STSG+VP++ +   E  C LA+S +ATTDEVR+ ++PIN+++ +  L+++LR+     N+ ++ FEYVML GVND+  DA+RL+ L+ GIP KINLI FN   G+ +  +T E++  F +I+  AG
Sbjct:  124 GRGTLCVSSQVGCTLTCSFCHTGTQKLVRNLTAAEIVGQLMLVRDDLGEWPERGAPKDETRLVSNLVLMGMGEPLYNFENVRNAMKVVMDGEGLSLSRRRITLSTSGVVPEIARTAEEIGCQLAISFHATTDEVRDILVPINKRWNIRTLLDSLRDYPRLSNSERITFEYVMLDGVNDTDADARRLVKLISGIPSKINLIPFNEWPGAPYRRSTPERIAAFADIIYKAG 352          
BLAST of CX290704 vs. ExPASy Swiss-Prot
Match: RLMN_RHOS1 (Ribosomal RNA large subunit methyltransferase N OS=Rhodobacter sphaeroides (strain ATCC 17029 / ATH 2.4.9) GN=rlmN PE=3 SV=1)

HSP 1 Score: 203.371 bits (516), Expect = 1.003e-51
Identity = 104/229 (45.41%), Postives = 151/229 (65.94%), Query Frame = 1
Query:   28 GRTTVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFARRLLSS---------EVGSITNVVFMGMGEPLHKVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCGSQFTPTTDEKMIEFRNILAGAG 687
            GR T+CVSSQVGC + C FC+TG   L R+LTAAEIV Q +  R  L           E   ++N+V MGMGEPL+  ENV  A  +++  +GL  S R++T+STSG+VP++ +   E  C LA+S +ATTDEVR+ ++PIN+++ +  L+++LR+     N+ ++ FEYVML GVND+  DA+RL+ L+ GIP KINLI FN   G+ +  +T E++  F +I+  AG
Sbjct:  124 GRGTLCVSSQVGCTLTCSFCHTGTQKLVRNLTAAEIVGQLMLVRDDLGEWPERGAPKDETRLVSNLVLMGMGEPLYNFENVRNAMKVVMDGEGLSLSRRRITLSTSGVVPEIARTAEEIGCQLAISFHATTDEVRDILVPINKRWNIRTLLDSLRDYPRLSNSERITFEYVMLDGVNDTDADARRLVKLISGIPSKINLIPFNEWPGAPYRRSTPERIAAFADIIYKAG 352          
BLAST of CX290704 vs. ExPASy Swiss-Prot
Match: RLMN_RHOS5 (Ribosomal RNA large subunit methyltransferase N OS=Rhodobacter sphaeroides (strain ATCC 17025 / ATH 2.4.3) GN=rlmN PE=3 SV=1)

HSP 1 Score: 202.986 bits (515), Expect = 1.310e-51
Identity = 103/229 (44.98%), Postives = 150/229 (65.50%), Query Frame = 1
Query:   28 GRTTVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFARRLLSS---------EVGSITNVVFMGMGEPLHKVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCGSQFTPTTDEKMIEFRNILAGAG 687
            GR T+CVSSQVGC + C FC+TG   L R+LTA EIV Q +  R  L           E   ++N+V MGMGEPL+  ENV  A  +++  +GL  S R++T+STSG+VP++ +   E  C LA+S +ATTDEVR+ ++PIN+++ +  L+++LR+     N+ ++ FEYVML G+NDS  DA+RL+ L+ GIP KINLI FN   G+ +  +T E++  F +I+  AG
Sbjct:  124 GRGTLCVSSQVGCTLTCSFCHTGTQKLVRNLTAGEIVGQVMLVRDDLGEWPERGAPKDETRLVSNLVLMGMGEPLYNFENVRNAMKVVMDGEGLSLSRRRITLSTSGVVPEIARTAEEIGCQLAISFHATTDEVRDILVPINKRWNIRTLLDSLRDYPRLSNSERITFEYVMLDGINDSDADARRLVKLISGIPSKINLIPFNEWPGAPYRRSTPERIAAFADIIYKAG 352          
The following BLAST results are available for this feature:
BLAST of CX290704 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RLMN_PELCD2.159e-5447.62Ribosomal RNA large subunit methyltransferase N OS... [more]
RLMN_GEOSL3.682e-5449.78Ribosomal RNA large subunit methyltransferase N OS... [more]
RLMN_GEOMG8.202e-5450.67Ribosomal RNA large subunit methyltransferase N OS... [more]
RLMN_ANADF4.501e-5248.48Ribosomal RNA large subunit methyltransferase N OS... [more]
RLMN2_MYXXD7.677e-5246.96Ribosomal RNA large subunit methyltransferase N 2 ... [more]
RLMN_ROSDO1.003e-5145.45Ribosomal RNA large subunit methyltransferase N OS... [more]
RLMN_RHOSK1.003e-5145.41Ribosomal RNA large subunit methyltransferase N OS... [more]
RLMN_RHOS41.003e-5145.41Ribosomal RNA large subunit methyltransferase N OS... [more]
RLMN_RHOS11.003e-5145.41Ribosomal RNA large subunit methyltransferase N OS... [more]
RLMN_RHOS51.310e-5144.98Ribosomal RNA large subunit methyltransferase N OS... [more]

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Properties
Property NameValue
Genbank descriptionC02026C09SK IF1 Citrus clementina cDNA clone C02026C09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX290704 ID=CX290704; Name=CX290704; organism=Citrus clementina; type=EST; length=706bp
GGAAACTGTTGTCATCCATGCAATAGGGGCAGGACAACTGTTTGTGTTTC
AAGTCAAGTGGGATGCGCTATGAATTGTCAGTTCTGCTACACTGGCAGGA
TGGGTCTGAAGAGGCATCTGACTGCAGCTGAGATTGTAGAACAAGCAGTA
TTTGCTCGGCGTCTGCTCTCGAGTGAAGTTGGCTCGATTACAAATGTTGT
ATTTATGGGAATGGGAGAGCCACTTCACAAGGTTGAAAATGTTATAAAAG
CTGCCAACATAATGGTGCATGAACAGGGTCTTCACTTCAGTCCTCGCAAG
GTCACTGTTTCTACAAGTGGGCTTGTTCCCCAGCTGAAACAATTTCTCAA
TGAATCTAATTGTGCTTTAGCTGTTAGTTTAAACGCTACAACTGATGAGG
TCAGAAACTGGATCATGCCGATTAATCGGAAGTATAAACTAGGACTGCTT
ATTGAGACTCTTCGGGAGGAACTTCACTTCAAAAATAATTACAAAGTTCT
CTTTGAATACGTAATGCTTGCCGGAGTTAATGACAGCTTTGATGATGCAA
AGAGGCTTATTGGTCTTGTTCAGGGCATTCCATGCAAGATCAATCTCATT
TCCTTCAATCCTCATTGTGGATCACAGTTTACACCAACCACCGATGAGAA
AATGATTGAGTTTCGGAATATTTTGGCCGGGGCTGGGTGCACTGTTTTCT
TGCGTC
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