CX290730

Overview
NameCX290730
Unique NameCX290730
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length670
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX290730 vs. ExPASy Swiss-Prot
Match: MFPA_BRANA (Glyoxysomal fatty acid beta-oxidation multifunctional protein MFP-a OS=Brassica napus PE=2 SV=2)

HSP 1 Score: 268.47 bits (685), Expect = 2.268e-71
Identity = 126/161 (78.26%), Postives = 144/161 (89.44%), Query Frame = 3
Query:    9 SMIIPIMQEDKRAGETTRKGFYLYDERRKASPDPEVKKFIEKARSMSGVAINPKFAKLSEKDIVEMIFFPVVNEACLVFAEGIAVKAADLDIASVMGMGFPVYRGGIMFWADSLGSKYIYSRLEEWSSLYGEFFKPCAFLAERAARGATLSAPVEQAKSKL 491
            SMIIP+MQEDKRAGE TRKGFYLYD+RRKA PDPE+K +I+KARS+SG   +PK  KLSEK+I+EM FFPVVNEAC VFAEGIAVKAADLDIA + GMGFP YRGGIMFWADS+GSKYIYS+LEEWS  YGEFFKPCAFLAER ++GA LSAP+EQ++S+L
Sbjct:  565 SMIIPLMQEDKRAGEATRKGFYLYDDRRKAKPDPEIKNYIDKARSVSGAKPDPKLEKLSEKEIIEMTFFPVVNEACRVFAEGIAVKAADLDIAGIFGMGFPPYRGGIMFWADSIGSKYIYSKLEEWSKAYGEFFKPCAFLAERGSKGAPLSAPLEQSRSRL 725          
BLAST of CX290730 vs. ExPASy Swiss-Prot
Match: MFPA_CUCSA (Glyoxysomal fatty acid beta-oxidation multifunctional protein MFP-a OS=Cucumis sativus PE=1 SV=1)

HSP 1 Score: 258.07 bits (658), Expect = 3.065e-68
Identity = 123/161 (76.40%), Postives = 140/161 (86.96%), Query Frame = 3
Query:    9 SMIIPIMQEDKRAGETTRKGFYLYDERRKASPDPEVKKFIEKARSMSGVAINPKFAKLSEKDIVEMIFFPVVNEACLVFAEGIAVKAADLDIASVMGMGFPVYRGGIMFWADSLGSKYIYSRLEEWSSLYGEFFKPCAFLAERAARGATLSAPVEQAKSKL 491
            SM+IP+MQEDK AGE+TRKGFY+YD+ RKA P+PE+KK+IEKAR+ SGV+++PK  KL EKDIVEMIFFPVVNEAC V AEGIAVKAADLDIA VMGMGFP YRGG+MFWADSLGS YIYSRLEEWS  YG FFKPC +LAERA +GATLSAP   AK ++
Sbjct:  565 SMLIPLMQEDKNAGESTRKGFYVYDKNRKAGPNPELKKYIEKARNSSGVSVDPKLTKLPEKDIVEMIFFPVVNEACRVLAEGIAVKAADLDIAGVMGMGFPSYRGGLMFWADSLGSNYIYSRLEEWSKQYGGFFKPCGYLAERAVQGATLSAPGGHAKPRM 725          
BLAST of CX290730 vs. ExPASy Swiss-Prot
Match: MFP_ORYSJ (Peroxisomal fatty acid beta-oxidation multifunctional protein OS=Oryza sativa subsp. japonica GN=MFP PE=1 SV=2)

HSP 1 Score: 167.933 bits (424), Expect = 4.171e-41
Identity = 77/162 (47.53%), Postives = 117/162 (72.22%), Query Frame = 3
Query:    9 SMIIPIMQEDKRAGETTRKGFYLYDERRKASPDPEVKKFIEKARSMSGVAINPKFAKLSEKDIVEMIFFPVVNEACLVFAEGIAVKAADLDIASVMGMGFPVYRGGIMFWADSLGSKYIYSRLEEWSSLYGEFFKPCAFLAERAARGATLSAP--VEQAKSK 488
            S ++ +M ++ R G++  KG+YLY++  K  PDP V+  I++ R  +      K   LS++DI+EMIFFPVVNEAC V  E + ++A+DLDIAS++GMGFP +RGG++FWAD++G+ YI+S+L +W+ +YG+FFKP ++L +RA R   LSAP   +QA S+
Sbjct:  562 SNLVDLMVQNGRQGKSNGKGYYLYEKGGKPKPDPSVQVVIDEYRRCAKTMPGGKPVTLSDQDILEMIFFPVVNEACRVMDENVVIRASDLDIASILGMGFPKFRGGLVFWADTIGAPYIHSKLSKWTEIYGDFFKPSSYLEDRAKRSLPLSAPNATQQASSR 723          
BLAST of CX290730 vs. ExPASy Swiss-Prot
Match: FADJ_ESCF3 (Fatty acid oxidation complex subunit alpha OS=Escherichia fergusonii (strain ATCC 35469 / DSM 13698 / CDC 0568-73) GN=fadJ PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 6.065e-16
Identity = 52/148 (35.14%), Postives = 77/148 (52.03%), Query Frame = 3
Query:   15 IIPIMQEDKRAGETTRKGFYLYDERRKASP---DPEVKKFIEKARSMSGVAINPKFAKLSEKDIVEMIFFPVVNEACLVFAEGIAVKAADLDIASVMGMGFPVYRGGIMFWADSLGSKYIYSRLEEWSSLYGEFFKPCAFLAERAARG 449
            ++  +  D R G    +GFYLY  + + S    DPE+ K I         A+  + +KLS + I E     ++NEA   + EG+   A D DI +V G+GFP + GG   + DSLG+  + + L+  +SLYG  F PC  L + A RG
Sbjct:  565 VVSSILNDDRKGRKNGRGFYLYGAKGRKSKKQVDPEIYKII---------AVQGQ-SKLSAQQITERCVMLMLNEAARCYREGVIRHARDGDIGAVFGIGFPPFLGGPFRYMDSLGASEVVAVLQRLTSLYGSRFTPCEQLLQMAERG 702          
BLAST of CX290730 vs. ExPASy Swiss-Prot
Match: FADJ_VIBPA (Fatty acid oxidation complex subunit alpha OS=Vibrio parahaemolyticus GN=fadJ PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.305e-15
Identity = 50/147 (34.01%), Postives = 75/147 (51.02%), Query Frame = 3
Query:   15 IIPIMQEDKRAGETTRKGFYLYDERRKASPDPEVKKFIEKARSMSGVAINPKFAKLSEKDIVEMIFFPVVNEACLVFAEGIAVKAADLDIASVMGMGFPVYRGGIMFWADSLGSKYIYSRLEEWSSLYGEFFKPCAFLAERAARGAT 455
            +  I+  D R G  + KGFY Y  ++K     EV K I K      + + P+ +KLS+ DI      P++NEA     +GI     D DI ++ G+GFP + GG   + D  G K +  ++ E++S YG+ + PC  L  RA  G T
Sbjct:  566 VFDILLNDGRKGRKSGKGFYTYKGKKK-----EVDKSIYKL-----LKLTPE-SKLSDNDIALRCVLPMLNEAVRCLDDGIIRSPRDGDIGAIFGIGFPPFLGGPFRYMDQFGLKELVEKMNEFASKYGDRYAPCDGLLTRAGEGRT 701          
BLAST of CX290730 vs. ExPASy Swiss-Prot
Match: FADJ_VIBCH (Fatty acid oxidation complex subunit alpha OS=Vibrio cholerae GN=fadJ PE=3 SV=2)

HSP 1 Score: 81.6481 bits (200), Expect = 3.931e-15
Identity = 46/145 (31.72%), Postives = 73/145 (50.34%), Query Frame = 3
Query:   15 IIPIMQEDKRAGETTRKGFYLYDERRKASPDPEVKKFIEKARSMSGVAINPKFAKLSEKDIVEMIFFPVVNEACLVFAEGIAVKAADLDIASVMGMGFPVYRGGIMFWADSLGSKYIYSRLEEWSSLYGEFFKPCAFLAERAARG 449
            +  ++ +D R G  + KGFY Y   +K   D  V K ++         + P+ +KL++K+I      P++NEA     EGI   A D D+ ++ G+GFP + GG   + D+LG   +   + + +  YGE F PC  L  RA  G
Sbjct:  569 VFDVLLKDNRKGRKSGKGFYTYKGSKKKEVDKSVYKLLK---------LTPE-SKLNDKEIAMRCLLPMLNEAVRCLDEGIIRSARDGDMGAIFGIGFPPFLGGPFRYMDTLGLTKVVEMMNQHTEKYGERFAPCDGLLTRAGLG 703          
BLAST of CX290730 vs. ExPASy Swiss-Prot
Match: FADJ_VIBC3 (Fatty acid oxidation complex subunit alpha OS=Vibrio cholerae serotype O1 (strain ATCC 39541 / Ogawa 395 / O395) GN=fadJ PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 3.931e-15
Identity = 46/145 (31.72%), Postives = 73/145 (50.34%), Query Frame = 3
Query:   15 IIPIMQEDKRAGETTRKGFYLYDERRKASPDPEVKKFIEKARSMSGVAINPKFAKLSEKDIVEMIFFPVVNEACLVFAEGIAVKAADLDIASVMGMGFPVYRGGIMFWADSLGSKYIYSRLEEWSSLYGEFFKPCAFLAERAARG 449
            +  ++ +D R G  + KGFY Y   +K   D  V K ++         + P+ +KL++K+I      P++NEA     EGI   A D D+ ++ G+GFP + GG   + D+LG   +   + + +  YGE F PC  L  RA  G
Sbjct:  569 VFDVLLKDNRKGRKSGKGFYTYKGSKKKEVDKSVYKLLK---------LTPE-SKLNDKEIAMRCLLPMLNEAVRCLDEGIIRSARDGDMGAIFGIGFPPFLGGPFRYMDTLGLTKVVEMMNQHTEKYGERFAPCDGLLTRAGLG 703          
BLAST of CX290730 vs. ExPASy Swiss-Prot
Match: FADJ_VIBHB (Fatty acid oxidation complex subunit alpha OS=Vibrio harveyi (strain ATCC BAA-1116 / BB120) GN=fadJ PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 8.758e-15
Identity = 48/145 (33.10%), Postives = 74/145 (51.03%), Query Frame = 3
Query:   15 IIPIMQEDKRAGETTRKGFYLYDERRKASPDPEVKKFIEKARSMSGVAINPKFAKLSEKDIVEMIFFPVVNEACLVFAEGIAVKAADLDIASVMGMGFPVYRGGIMFWADSLGSKYIYSRLEEWSSLYGEFFKPCAFLAERAARG 449
            +   +  D R G  T KGFY Y  ++K     EV K + K  +++     P+ +KLS+ DI      P++NEA     +GI     D DI ++ G+GFP + GG   + D  G K +  ++ E++S YG+ + PC  L  RA  G
Sbjct:  566 VFDTLLNDGRKGRKTGKGFYTYKGKKK-----EVDKSVYKLLNLT-----PE-SKLSDNDIALRCVLPMLNEAVRCLDDGIIRSPRDGDIGAIFGIGFPPFLGGPFCYMDQFGLKELVEKMNEFASKYGDRYAPCDGLLTRAGEG 699          
BLAST of CX290730 vs. ExPASy Swiss-Prot
Match: ECHP_DANRE (Peroxisomal bifunctional enzyme OS=Danio rerio GN=ehhadh PE=2 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 1.951e-14
Identity = 48/149 (32.21%), Postives = 82/149 (55.03%), Query Frame = 3
Query:   42 RAGETTRKGFYLYDER--RKASPDPEVKKFIEKARSMSGVAINPKFAKLSEKDIVEMIFFPVVNEACLVFAEGIAVKAADLDIASVMGMGFPVYRGGIMFWADSLGSKYIYSRLEEWSSLYGE--FFKPCAFLAERAARGATLSAPVEQ 476
            R G+ T +G+Y+YD+     A PDP ++  +E  RS  G  I P+  K+++++I+E   F + NE   +  + IA +  D+D+  + G GFP +RGG MF+A  +G + +  RLE +     +    +P   L +  ARG   S P+++
Sbjct:  565 RFGQKTGRGWYMYDKPGDTNAKPDPLIQNLLETYRSRYG--IQPR--KITDQEIIERCLFALANEGFRILKDKIAGQPEDIDVIYLFGYGFPRHRGGPMFYASMVGLERVLERLEYYHHALPDVPHLEPSPLLKKLVARG---SPPIQK 706          
BLAST of CX290730 vs. ExPASy Swiss-Prot
Match: FADJ_VIBVY (Fatty acid oxidation complex subunit alpha OS=Vibrio vulnificus (strain YJ016) GN=fadJ PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 3.328e-14
Identity = 46/145 (31.72%), Postives = 73/145 (50.34%), Query Frame = 3
Query:   15 IIPIMQEDKRAGETTRKGFYLYDERRKASPDPEVKKFIEKARSMSGVAINPKFAKLSEKDIVEMIFFPVVNEACLVFAEGIAVKAADLDIASVMGMGFPVYRGGIMFWADSLGSKYIYSRLEEWSSLYGEFFKPCAFLAERAARG 449
            +  ++  D R G  + KGFY Y  ++K     EV K + K      + + P+ +KLS+ DI      P++NEA     +GI     D DI ++ G+GFP + GG   + D  G K +  ++ +++  YG+ F PC  L  RA  G
Sbjct:  566 VFDVLLNDGRKGRKSGKGFYTYKGKKK-----EVDKSVYKL-----LKLTPE-SKLSDNDIALRCVLPMLNEAVRCLDDGIIRSPRDGDIGAIFGIGFPPFLGGPFRYMDQFGLKELVEKMNQFAEKYGDRFAPCDGLLTRAGEG 699          
The following BLAST results are available for this feature:
BLAST of CX290730 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 115
Match NameE-valueIdentityDescription
MFPA_BRANA2.268e-7178.26Glyoxysomal fatty acid beta-oxidation multifunctio... [more]
MFPA_CUCSA3.065e-6876.40Glyoxysomal fatty acid beta-oxidation multifunctio... [more]
MFP_ORYSJ4.171e-4147.53Peroxisomal fatty acid beta-oxidation multifunctio... [more]
FADJ_ESCF36.065e-1635.14Fatty acid oxidation complex subunit alpha OS=Esch... [more]
FADJ_VIBPA2.305e-1534.01Fatty acid oxidation complex subunit alpha OS=Vibr... [more]
FADJ_VIBCH3.931e-1531.72Fatty acid oxidation complex subunit alpha OS=Vibr... [more]
FADJ_VIBC33.931e-1531.72Fatty acid oxidation complex subunit alpha OS=Vibr... [more]
FADJ_VIBHB8.758e-1533.10Fatty acid oxidation complex subunit alpha OS=Vibr... [more]
ECHP_DANRE1.951e-1432.21Peroxisomal bifunctional enzyme OS=Danio rerio GN=... [more]
FADJ_VIBVY3.328e-1431.72Fatty acid oxidation complex subunit alpha OS=Vibr... [more]

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Properties
Property NameValue
Genbank descriptionC02026E12SK IF1 Citrus clementina cDNA clone C02026E12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX290730 ID=CX290730; Name=CX290730; organism=Citrus clementina; type=EST; length=670bp
ACCTATAATCAATGATTATCCCAATTATGCAAGAGGATAAGAGAGCAGGT
GAAACCACTCGCAAAGGTTTCTATTTGTATGATGAGAGACGAAAAGCTAG
CCCAGATCCTGAAGTAAAGAAATTCATTGAGAAGGCTAGGAGCATGTCTG
GTGTTGCCATTAACCCTAAGTTTGCAAAATTATCTGAGAAGGATATTGTG
GAGATGATATTCTTTCCGGTGGTGAATGAGGCCTGTCTTGTCTTTGCTGA
AGGTATTGCAGTCAAGGCAGCTGACCTTGACATTGCGTCTGTTATGGGCA
TGGGTTTTCCAGTTTACAGGGGAGGAATCATGTTCTGGGCCGACTCTCTT
GGATCGAAGTACATTTACTCACGATTGGAGGAATGGTCAAGCTTGTACGG
AGAATTTTTTAAGCCATGTGCTTTCTTGGCTGAAAGAGCTGCCAGGGGAG
CTACTCTGAGTGCTCCGGTGGAACAAGCCAAGTCTAAATTATAAGATAAA
ACTTTGCTTTGTTTGTTGGTTGTTGAACTTAGGGAACAATTTCAGAACAT
TTTTCTTTCTGCTGTGCTGCTTTCTCTTTTCAATTCCCAGATGAGATATG
CTCGGCAGGATCCAAATAATTTATGTGATAATAAATTATGTTATATAAAA
AAAAAAAAAAAAAAAAAAAA
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