CX290763

Overview
NameCX290763
Unique NameCX290763
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length611
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX290763 vs. ExPASy Swiss-Prot
Match: AP2S1_MAIZE (AP-2 complex subunit sigma-1 OS=Zea mays GN=AP-17 PE=2 SV=1)

HSP 1 Score: 201.83 bits (512), Expect = 2.218e-51
Identity = 99/102 (97.06%), Postives = 100/102 (98.04%), Query Frame = 3
Query:   15 KVEYEVHRLVVNRDPKFTNFVEFRTHKVIYRRYAGLFFSLCVDITDNELAYLECIHLFVEILDHFFSNVCELDLVFNFHKV--YLILDEFILAGELQETSKR 314
            KVEYEVHRLVVNRDPKFTNFVEFRTHKVIYRRYAGLFFS+CVDITDNELAYLECIHLFVEILDHFFSNVCELDLVFNFHKV  YLILDEFILAGELQETSKR
Sbjct:   30 KVEYEVHRLVVNRDPKFTNFVEFRTHKVIYRRYAGLFFSICVDITDNELAYLECIHLFVEILDHFFSNVCELDLVFNFHKVYRYLILDEFILAGELQETSKR 131          
BLAST of CX290763 vs. ExPASy Swiss-Prot
Match: AP2S_NEUCR (AP-2 complex subunit sigma OS=Neurospora crassa GN=aps-2 PE=3 SV=1)

HSP 1 Score: 165.622 bits (418), Expect = 1.762e-40
Identity = 79/118 (66.95%), Postives = 95/118 (80.51%), Query Frame = 3
Query:    3 EGETKVEYEVHRLVVNRDPKF-TNFVEFRTHKVIYRRYAGLFFSLCVDITDNELAYLECIHLFVEILDHFFSNVCELDLVFNFHKVYLILDEFILAGELQETSKRAIIERMGELEKLE 353
            E + K++ E+HRLV  RD K+ +NFVEFR HKV+YRRYAGLFF  CVD  DNELAYLE IH FVE+LD FF NVCELDLVFNF+KVY ILDE  LAGE++ETSK+ ++ R+  L+KLE
Sbjct:   26 EEKIKLKGEIHRLVAPRDQKYQSNFVEFRNHKVVYRRYAGLFFCACVDTNDNELAYLEAIHFFVEVLDSFFGNVCELDLVFNFYKVYAILDEVFLAGEIEETSKQVVLTRLEHLDKLE 143          
BLAST of CX290763 vs. ExPASy Swiss-Prot
Match: AP2S_DICDI (AP-2 complex subunit sigma OS=Dictyostelium discoideum GN=ap2s1 PE=3 SV=2)

HSP 1 Score: 162.54 bits (410), Expect = 1.491e-39
Identity = 75/112 (66.96%), Postives = 93/112 (83.04%), Query Frame = 3
Query:   15 KVEYEVHRLVVNRDPKFTNFVEFRTHKVIYRRYAGLFFSLCVDITDNELAYLECIHLFVEILDHFFSNVCELDLVFNFHKVYLILDEFILAGELQETSKRAIIERMGELEKL 350
            K+ +E+H++V +R+ KFTNFVEFRTH+++YRRYAGLFFS+CVD TDNEL  LE IHLFVE+LD +F NVCELDLVFNF+KVY I+DE  LAGEL E SK  I++RM  L+ L
Sbjct:   30 KLSHEIHKIVNSRETKFTNFVEFRTHRIVYRRYAGLFFSVCVDPTDNELFCLEAIHLFVEVLDAYFGNVCELDLVFNFYKVYAIIDEVFLAGELMEPSKHVILQRMEFLDNL 141          
BLAST of CX290763 vs. ExPASy Swiss-Prot
Match: AP2S_GIBZE (AP-2 complex subunit sigma OS=Gibberella zeae GN=APS2 PE=3 SV=1)

HSP 1 Score: 160.999 bits (406), Expect = 4.339e-39
Identity = 77/118 (65.25%), Postives = 95/118 (80.51%), Query Frame = 3
Query:    3 EGETKVEYEVHRLVVNRDPKF-TNFVEFRTHKVIYRRYAGLFFSLCVDITDNELAYLECIHLFVEILDHFFSNVCELDLVFNFHKVYLILDEFILAGELQETSKRAIIERMGELEKLE 353
            E + K++ EVHRLV  RD K+ +NFVEFR +K++YRRYAGLFF  CVD  DNELA+LE IH FVE+LD FF NVCELDLVFNF+KVY ILDE  LAGE++ETSK+ ++ R+  L+KLE
Sbjct:   26 EQKIKLKGEVHRLVAPRDQKYQSNFVEFRNNKIVYRRYAGLFFCACVDTNDNELAFLEAIHFFVEVLDAFFGNVCELDLVFNFYKVYAILDEVFLAGEIEETSKQVVLTRLEHLDKLE 143          
BLAST of CX290763 vs. ExPASy Swiss-Prot
Match: AP2S_ASPFU (AP-2 complex subunit sigma OS=Aspergillus fumigatus GN=aps2 PE=3 SV=1)

HSP 1 Score: 160.999 bits (406), Expect = 4.339e-39
Identity = 79/119 (66.39%), Postives = 97/119 (81.51%), Query Frame = 3
Query:    3 EGETKVEYEVHRLVVNRDPKF-TNFVEF-RTHKVIYRRYAGLFFSLCVDITDNELAYLECIHLFVEILDHFFSNVCELDLVFNFHKVYLILDEFILAGELQETSKRAIIERMGELEKLE 353
            E + K++ EVHRLV  RD K+ +NFVEF R+ K++YRRYAGLFF +CVD TDNELAYLE IH FVE+LD FF NVCELDLVFNF+KVY ILDE  LAGE++ETSK+ ++ R+  L+KLE
Sbjct:   27 EEKVKLKGEVHRLVAPRDQKYQSNFVEFKRSTKIVYRRYAGLFFCVCVDATDNELAYLEAIHFFVEVLDQFFGNVCELDLVFNFYKVYAILDEVFLAGEIEETSKQVVLTRLEHLDKLE 145          
BLAST of CX290763 vs. ExPASy Swiss-Prot
Match: AP2S_EMENI (AP-2 complex subunit sigma OS=Emericella nidulans GN=aps2 PE=3 SV=1)

HSP 1 Score: 160.229 bits (404), Expect = 7.402e-39
Identity = 79/119 (66.39%), Postives = 96/119 (80.67%), Query Frame = 3
Query:    3 EGETKVEYEVHRLVVNRDPKF-TNFVEF-RTHKVIYRRYAGLFFSLCVDITDNELAYLECIHLFVEILDHFFSNVCELDLVFNFHKVYLILDEFILAGELQETSKRAIIERMGELEKLE 353
            E + K++ EVHRLV  RD K+ +NFVEF R+ K++YRRYAGLFF  CVD TDNELAYLE IH FVE+LD FF NVCELDLVFNF+KVY ILDE  LAGE++ETSK+ ++ R+  L+KLE
Sbjct:   27 EEKVKLKGEVHRLVAPRDQKYQSNFVEFKRSTKIVYRRYAGLFFCACVDATDNELAYLEAIHFFVEVLDQFFGNVCELDLVFNFYKVYAILDEVFLAGEIEETSKQVVLTRLEHLDKLE 145          
BLAST of CX290763 vs. ExPASy Swiss-Prot
Match: AP2S1_RAT (AP-2 complex subunit sigma OS=Rattus norvegicus GN=Ap2s1 PE=2 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 3.802e-35
Identity = 68/113 (60.18%), Postives = 89/113 (78.76%), Query Frame = 3
Query:   15 KVEYEVHRLVVNRDPKFTNFVEFRTHKVIYRRYAGLFFSLCVDITDNELAYLECIHLFVEILDHFFSNVCELDLVFNFHKVYLILDEFILAGELQETSKRAIIERMGELEKLE 353
            K+  EVH +V  RD K TNFVEFR  K+IYRRYAGL+F +CVD+ DN LAYLE IH FVE+L+ +F NVCELDLVFNF+KVY ++DE  LAGE++ETS+  +++++  L+ LE
Sbjct:   30 KLIEEVHAVVTVRDAKHTNFVEFRNFKIIYRRYAGLYFCICVDVNDNNLAYLEAIHNFVEVLNEYFHNVCELDLVFNFYKVYTVVDEMFLAGEIRETSQTKVLKQLLMLQSLE 142          
BLAST of CX290763 vs. ExPASy Swiss-Prot
Match: AP2S1_PONAB (AP-2 complex subunit sigma OS=Pongo abelii GN=AP2S1 PE=2 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 3.802e-35
Identity = 68/113 (60.18%), Postives = 89/113 (78.76%), Query Frame = 3
Query:   15 KVEYEVHRLVVNRDPKFTNFVEFRTHKVIYRRYAGLFFSLCVDITDNELAYLECIHLFVEILDHFFSNVCELDLVFNFHKVYLILDEFILAGELQETSKRAIIERMGELEKLE 353
            K+  EVH +V  RD K TNFVEFR  K+IYRRYAGL+F +CVD+ DN LAYLE IH FVE+L+ +F NVCELDLVFNF+KVY ++DE  LAGE++ETS+  +++++  L+ LE
Sbjct:   30 KLIEEVHAVVTVRDAKHTNFVEFRNFKIIYRRYAGLYFCICVDVNDNNLAYLEAIHNFVEVLNEYFHNVCELDLVFNFYKVYTVVDEMFLAGEIRETSQTKVLKQLLMLQSLE 142          
BLAST of CX290763 vs. ExPASy Swiss-Prot
Match: AP2S1_MOUSE (AP-2 complex subunit sigma OS=Mus musculus GN=Ap2s1 PE=1 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 3.802e-35
Identity = 68/113 (60.18%), Postives = 89/113 (78.76%), Query Frame = 3
Query:   15 KVEYEVHRLVVNRDPKFTNFVEFRTHKVIYRRYAGLFFSLCVDITDNELAYLECIHLFVEILDHFFSNVCELDLVFNFHKVYLILDEFILAGELQETSKRAIIERMGELEKLE 353
            K+  EVH +V  RD K TNFVEFR  K+IYRRYAGL+F +CVD+ DN LAYLE IH FVE+L+ +F NVCELDLVFNF+KVY ++DE  LAGE++ETS+  +++++  L+ LE
Sbjct:   30 KLIEEVHAVVTVRDAKHTNFVEFRNFKIIYRRYAGLYFCICVDVNDNNLAYLEAIHNFVEVLNEYFHNVCELDLVFNFYKVYTVVDEMFLAGEIRETSQTKVLKQLLMLQSLE 142          
BLAST of CX290763 vs. ExPASy Swiss-Prot
Match: AP2S1_HUMAN (AP-2 complex subunit sigma OS=Homo sapiens GN=AP2S1 PE=1 SV=2)

HSP 1 Score: 147.902 bits (372), Expect = 3.802e-35
Identity = 68/113 (60.18%), Postives = 89/113 (78.76%), Query Frame = 3
Query:   15 KVEYEVHRLVVNRDPKFTNFVEFRTHKVIYRRYAGLFFSLCVDITDNELAYLECIHLFVEILDHFFSNVCELDLVFNFHKVYLILDEFILAGELQETSKRAIIERMGELEKLE 353
            K+  EVH +V  RD K TNFVEFR  K+IYRRYAGL+F +CVD+ DN LAYLE IH FVE+L+ +F NVCELDLVFNF+KVY ++DE  LAGE++ETS+  +++++  L+ LE
Sbjct:   30 KLIEEVHAVVTVRDAKHTNFVEFRNFKIIYRRYAGLYFCICVDVNDNNLAYLEAIHNFVEVLNEYFHNVCELDLVFNFYKVYTVVDEMFLAGEIRETSQTKVLKQLLMLQSLE 142          
The following BLAST results are available for this feature:
BLAST of CX290763 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 40
Match NameE-valueIdentityDescription
AP2S1_MAIZE2.218e-5197.06AP-2 complex subunit sigma-1 OS=Zea mays GN=AP-17 ... [more]
AP2S_NEUCR1.762e-4066.95AP-2 complex subunit sigma OS=Neurospora crassa GN... [more]
AP2S_DICDI1.491e-3966.96AP-2 complex subunit sigma OS=Dictyostelium discoi... [more]
AP2S_GIBZE4.339e-3965.25AP-2 complex subunit sigma OS=Gibberella zeae GN=A... [more]
AP2S_ASPFU4.339e-3966.39AP-2 complex subunit sigma OS=Aspergillus fumigatu... [more]
AP2S_EMENI7.402e-3966.39AP-2 complex subunit sigma OS=Emericella nidulans ... [more]
AP2S1_RAT3.802e-3560.18AP-2 complex subunit sigma OS=Rattus norvegicus GN... [more]
AP2S1_PONAB3.802e-3560.18AP-2 complex subunit sigma OS=Pongo abelii GN=AP2S... [more]
AP2S1_MOUSE3.802e-3560.18AP-2 complex subunit sigma OS=Mus musculus GN=Ap2s... [more]
AP2S1_HUMAN3.802e-3560.18AP-2 complex subunit sigma OS=Homo sapiens GN=AP2S... [more]

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Properties
Property NameValue
Genbank descriptionC02026H10SK IF1 Citrus clementina cDNA clone C02026H10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX290763 ID=CX290763; Name=CX290763; organism=Citrus clementina; type=EST; length=611bp
ACGAGGGAGAAACCAAGGTCGAATACGAGGTTCATCGGTTGGTGGTCAAC
AGAGATCCCAAGTTTACTAATTTCGTTGAGTTTCGTACACACAAGGTAAT
CTACAGGCGGTATGCTGGATTGTTTTTCTCGCTTTGTGTCGACATAACAG
ATAATGAATTGGCATATTTGGAGTGCATCCATTTATTTGTGGAGATATTG
GATCATTTCTTCAGCAATGTCTGCGAGCTAGATTTAGTATTTAATTTTCA
CAAGGTTTATCTAATACTTGATGAATTCATTCTTGCTGGGGAGCTTCAAG
AGACAAGCAAGAGGGCAATCATAGAGCGAATGGGGGAACTGGAGAAGCTA
GAATGAAGAGTTATGATTTAGTAAAGGGTGTTAAAGTGAAGTTTGGTTTT
GCCTTTTCACATTTTTCCATTTGATGGATTGGTTCTATTATAATTTGTTT
ACCTATTTTTTGCACAGCCAATCTTTCTCTAGTATTCTCAGAAATCGAAA
ACCCAATCCTACGGTTGTATTATCATAAATTGTACGAATAACTTGCGATT
TGCTGTCATTGTTTGCGAGGCAATCCTCACTGAGTAACCAGTAAAAAATG
CATGCTTGAAG
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