CX290764

Overview
NameCX290764
Unique NameCX290764
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length673
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX290764 vs. ExPASy Swiss-Prot
Match: VPS4_YEAST (Vacuolar protein sorting-associated protein 4 OS=Saccharomyces cerevisiae GN=VPS4 PE=1 SV=1)

HSP 1 Score: 282.722 bits (722), Expect = 1.183e-75
Identity = 147/223 (65.92%), Postives = 173/223 (77.58%), Query Frame = 1
Query:   19 LLYGPPGTGKSYLAKAVATEADSTFFSISSSDLVSKWMGESEKLVSSLFQMARESAPSIIFIDEIDSLCGQRGEGNESEASRRIKTELLVQMQGVGHNDQKVLVLAATNTPYALDQAIRRRFDKRIYIPLPDLKARQHMFKVHLGDTPHNLTESDFESLARKTEGFSGSDISVCVKDVLFEPVRKTQDAMFFFKTS-----NGMWMPCGPKQSGAVQISMQEL 672
            LLYGPPGTGKSYLAKAVATEA+STFFS+SSSDLVSKWMGESEKLV  LF MARE+ PSIIFIDE+D+L G RGEG ESEASRRIKTELLVQM GVG++ Q VLVL ATN P+ LD AIRRRF++RIYIPLPDL AR  MF++++GDTP  LT+ D+ +L   TEG+SGSDI+V VKD L +P+RK Q A  F   S          PC P   GA+++S  ++
Sbjct:  170 LLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWMGESEKLVKQLFAMARENKPSIIFIDEVDALTGTRGEG-ESEASRRIKTELLVQMNGVGNDSQGVLVLGATNIPWQLDSAIRRRFERRIYIPLPDLAARTTMFEINVGDTPCVLTKEDYRTLGAMTEGYSGSDIAVVVKDALMQPIRKIQSATHFKDVSTEDDETRKLTPCSPGDDGAIEMSWTDI 391          
BLAST of CX290764 vs. ExPASy Swiss-Prot
Match: VPS4B_MOUSE (Vacuolar protein sorting-associated protein 4B OS=Mus musculus GN=Vps4b PE=1 SV=2)

HSP 1 Score: 282.337 bits (721), Expect = 1.545e-75
Identity = 146/230 (63.48%), Postives = 178/230 (77.39%), Query Frame = 1
Query:   19 LLYGPPGTGKSYLAKAVATEAD-STFFSISSSDLVSKWMGESEKLVSSLFQMARESAPSIIFIDEIDSLCGQRGEGNESEASRRIKTELLVQMQGVGHNDQKVLVLAATNTPYALDQAIRRRFDKRIYIPLPDLKARQHMFKVHLGDTPHNLTESDFESLARKTEGFSGSDISVCVKDVLFEPVRKTQDAMFFFKTS-----------NGMWMPCGPKQSGAVQISMQEL 672
            LL+GPPGTGKSYLAKAVATEA+ STFFSISSSDLVSKW+GESEKLV +LFQ+ARE+ PSIIFIDEIDSLCG R E NESEA+RRIKTE LVQMQGVG ++  +LVL ATN P+ LD AIRRRF+KRIYIPLP+  AR  MF++HLG T ++LTE+DF+ L RKT+G+SG+DIS+ V+D L +PVRK Q A  F K             N +  PC P   GA++++  ++
Sbjct:  171 LLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLVSKWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSE-NESEAARRIKTEFLVQMQGVGVDNDGILVLGATNIPWVLDSAIRRRFEKRIYIPLPEAHARAAMFRLHLGSTQNSLTEADFQELGRKTDGYSGADISIIVRDALMQPVRKVQSATHFKKVRGPSRADPNCIVNDLLTPCSPGDPGAIEMTWMDV 399          
BLAST of CX290764 vs. ExPASy Swiss-Prot
Match: VPS4A_RAT (Vacuolar protein sorting-associated protein 4A OS=Rattus norvegicus GN=Vps4a PE=2 SV=1)

HSP 1 Score: 281.182 bits (718), Expect = 3.443e-75
Identity = 143/230 (62.17%), Postives = 177/230 (76.96%), Query Frame = 1
Query:   19 LLYGPPGTGKSYLAKAVATEAD-STFFSISSSDLVSKWMGESEKLVSSLFQMARESAPSIIFIDEIDSLCGQRGEGNESEASRRIKTELLVQMQGVGHNDQKVLVLAATNTPYALDQAIRRRFDKRIYIPLPDLKARQHMFKVHLGDTPHNLTESDFESLARKTEGFSGSDISVCVKDVLFEPVRKTQDAMFFFKTS-----------NGMWMPCGPKQSGAVQISMQEL 672
            LL+GPPGTGKSYLAKAVATEA+ STFFS+SSSDL+SKW+GESEKLV +LF++AR+  PSIIFIDE+DSLCG R E NESEA+RRIKTE LVQMQGVG+N+   LVL ATN P+ LD AIRRRF+KRIYIPLP+  AR  MF++HLG TPHNLT+++   LARKTEG+SG+DIS+ V+D L +PVRK Q A  F K             + +  PC P   GA++++  ++
Sbjct:  164 LLFGPPGTGKSYLAKAVATEANNSTFFSVSSSDLMSKWLGESEKLVKNLFELARQHKPSIIFIDEVDSLCGSRNE-NESEAARRIKTEFLVQMQGVGNNNDGTLVLGATNIPWVLDSAIRRRFEKRIYIPLPEEAARAQMFRLHLGSTPHNLTDANIHELARKTEGYSGADISIIVRDSLMQPVRKVQSATHFKKVCGPSRTNPSVMIDDLLTPCSPGDPGAIEMTWMDV 392          
BLAST of CX290764 vs. ExPASy Swiss-Prot
Match: VPS4A_MOUSE (Vacuolar protein sorting-associated protein 4A OS=Mus musculus GN=Vps4a PE=1 SV=1)

HSP 1 Score: 281.182 bits (718), Expect = 3.443e-75
Identity = 143/230 (62.17%), Postives = 177/230 (76.96%), Query Frame = 1
Query:   19 LLYGPPGTGKSYLAKAVATEAD-STFFSISSSDLVSKWMGESEKLVSSLFQMARESAPSIIFIDEIDSLCGQRGEGNESEASRRIKTELLVQMQGVGHNDQKVLVLAATNTPYALDQAIRRRFDKRIYIPLPDLKARQHMFKVHLGDTPHNLTESDFESLARKTEGFSGSDISVCVKDVLFEPVRKTQDAMFFFKTS-----------NGMWMPCGPKQSGAVQISMQEL 672
            LL+GPPGTGKSYLAKAVATEA+ STFFS+SSSDL+SKW+GESEKLV +LF++AR+  PSIIFIDE+DSLCG R E NESEA+RRIKTE LVQMQGVG+N+   LVL ATN P+ LD AIRRRF+KRIYIPLP+  AR  MF++HLG TPHNLT+++   LARKTEG+SG+DIS+ V+D L +PVRK Q A  F K             + +  PC P   GA++++  ++
Sbjct:  164 LLFGPPGTGKSYLAKAVATEANNSTFFSVSSSDLMSKWLGESEKLVKNLFELARQHKPSIIFIDEVDSLCGSRNE-NESEAARRIKTEFLVQMQGVGNNNDGTLVLGATNIPWVLDSAIRRRFEKRIYIPLPEEAARAQMFRLHLGSTPHNLTDANIHELARKTEGYSGADISIIVRDSLMQPVRKVQSATHFKKVCGPSRTNPSVMIDDLLTPCSPGDPGAIEMTWMDV 392          
BLAST of CX290764 vs. ExPASy Swiss-Prot
Match: VPS4B_BOVIN (Vacuolar protein sorting-associated protein 4B OS=Bos taurus GN=VPS4B PE=2 SV=1)

HSP 1 Score: 280.411 bits (716), Expect = 5.872e-75
Identity = 146/230 (63.48%), Postives = 177/230 (76.96%), Query Frame = 1
Query:   19 LLYGPPGTGKSYLAKAVATEAD-STFFSISSSDLVSKWMGESEKLVSSLFQMARESAPSIIFIDEIDSLCGQRGEGNESEASRRIKTELLVQMQGVGHNDQKVLVLAATNTPYALDQAIRRRFDKRIYIPLPDLKARQHMFKVHLGDTPHNLTESDFESLARKTEGFSGSDISVCVKDVLFEPVRKTQDAMFFFKTS-----------NGMWMPCGPKQSGAVQISMQEL 672
            LL+GPPGTGKSYLAKAVATEA+ STFFSISSSDLVSKW+GESEKLV +LFQ+ARE+ PSIIFIDEIDSLCG R E NESEA+RRIKTE LVQMQGVG ++  +LVL ATN P+ LD AIRRRF+KRIYIPLP+  AR  MFK+HLG T ++LTE+DF  L +KTEG+SG+DIS+ V+D L +PVRK Q A  F K             + +  PC P   GA++++  ++
Sbjct:  171 LLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLVSKWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSE-NESEAARRIKTEFLVQMQGVGVDNDGILVLGATNIPWVLDSAIRRRFEKRIYIPLPEAHARAAMFKLHLGTTQNSLTEADFRDLGKKTEGYSGADISIIVRDALMQPVRKVQSATHFKKVRGPSRADPNNIVDDLLTPCSPGDPGAIEMTWMDV 399          
BLAST of CX290764 vs. ExPASy Swiss-Prot
Match: VPS4A_HUMAN (Vacuolar protein sorting-associated protein 4A OS=Homo sapiens GN=VPS4A PE=1 SV=1)

HSP 1 Score: 280.411 bits (716), Expect = 5.872e-75
Identity = 143/230 (62.17%), Postives = 177/230 (76.96%), Query Frame = 1
Query:   19 LLYGPPGTGKSYLAKAVATEAD-STFFSISSSDLVSKWMGESEKLVSSLFQMARESAPSIIFIDEIDSLCGQRGEGNESEASRRIKTELLVQMQGVGHNDQKVLVLAATNTPYALDQAIRRRFDKRIYIPLPDLKARQHMFKVHLGDTPHNLTESDFESLARKTEGFSGSDISVCVKDVLFEPVRKTQDAMFFFKTS-----------NGMWMPCGPKQSGAVQISMQEL 672
            LL+GPPGTGKSYLAKAVATEA+ STFFS+SSSDL+SKW+GESEKLV +LF++AR+  PSIIFIDE+DSLCG R E NESEA+RRIKTE LVQMQGVG+N+   LVL ATN P+ LD AIRRRF+KRIYIPLP+  AR  MF++HLG TPHNLT+++   LARKTEG+SG+DIS+ V+D L +PVRK Q A  F K             + +  PC P   GA++++  ++
Sbjct:  164 LLFGPPGTGKSYLAKAVATEANNSTFFSVSSSDLMSKWLGESEKLVKNLFELARQHKPSIIFIDEVDSLCGSRNE-NESEAARRIKTEFLVQMQGVGNNNDGTLVLGATNIPWVLDSAIRRRFEKRIYIPLPEEAARAQMFRLHLGSTPHNLTDANIHELARKTEGYSGADISIIVRDSLMQPVRKVQSATHFKKVCGPSRTNPSMMIDDLLTPCSPGDPGAMEMTWMDV 392          
BLAST of CX290764 vs. ExPASy Swiss-Prot
Match: VPS4B_HUMAN (Vacuolar protein sorting-associated protein 4B OS=Homo sapiens GN=VPS4B PE=1 SV=2)

HSP 1 Score: 279.641 bits (714), Expect = 1.002e-74
Identity = 146/230 (63.48%), Postives = 177/230 (76.96%), Query Frame = 1
Query:   19 LLYGPPGTGKSYLAKAVATEAD-STFFSISSSDLVSKWMGESEKLVSSLFQMARESAPSIIFIDEIDSLCGQRGEGNESEASRRIKTELLVQMQGVGHNDQKVLVLAATNTPYALDQAIRRRFDKRIYIPLPDLKARQHMFKVHLGDTPHNLTESDFESLARKTEGFSGSDISVCVKDVLFEPVRKTQDAMFFFKTS-----------NGMWMPCGPKQSGAVQISMQEL 672
            LL+GPPGTGKSYLAKAVATEA+ STFFSISSSDLVSKW+GESEKLV +LFQ+ARE+ PSIIFIDEIDSLCG R E NESEA+RRIKTE LVQMQGVG ++  +LVL ATN P+ LD AIRRRF+KRIYIPLP+  AR  MFK+HLG T ++LTE+DF  L RKT+G+SG+DIS+ V+D L +PVRK Q A  F K             + +  PC P   GA++++  ++
Sbjct:  171 LLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLVSKWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSE-NESEAARRIKTEFLVQMQGVGVDNDGILVLGATNIPWVLDSAIRRRFEKRIYIPLPEPHARAAMFKLHLGTTQNSLTEADFRELGRKTDGYSGADISIIVRDALMQPVRKVQSATHFKKVRGPSRADPNHLVDDLLTPCSPGDPGAIEMTWMDV 399          
BLAST of CX290764 vs. ExPASy Swiss-Prot
Match: VPS4B_PONAB (Vacuolar protein sorting-associated protein 4B OS=Pongo abelii GN=VPS4B PE=2 SV=1)

HSP 1 Score: 278.1 bits (710), Expect = 2.914e-74
Identity = 145/230 (63.04%), Postives = 177/230 (76.96%), Query Frame = 1
Query:   19 LLYGPPGTGKSYLAKAVATEAD-STFFSISSSDLVSKWMGESEKLVSSLFQMARESAPSIIFIDEIDSLCGQRGEGNESEASRRIKTELLVQMQGVGHNDQKVLVLAATNTPYALDQAIRRRFDKRIYIPLPDLKARQHMFKVHLGDTPHNLTESDFESLARKTEGFSGSDISVCVKDVLFEPVRKTQDAMFFFKTS-----------NGMWMPCGPKQSGAVQISMQEL 672
            LL+GPPGTGKSYLAKAVATEA+ STFFSISSSDLVSKW+GESEKLV +LFQ+ARE+ PSIIFIDEIDSLCG R E NESEA+RRIKTE LVQM+GVG ++  +LVL ATN P+ LD AIRRRF+KRIYIPLP+  AR  MFK+HLG T ++LTE+DF  L RKT+G+SG+DIS+ V+D L +PVRK Q A  F K             + +  PC P   GA++++  ++
Sbjct:  171 LLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLVSKWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSE-NESEAARRIKTEFLVQMRGVGVDNDGILVLGATNIPWVLDSAIRRRFEKRIYIPLPEPHARAAMFKLHLGTTQNSLTEADFRELGRKTDGYSGADISIIVRDALMQPVRKVQSATHFKKVRGPSRADPNHLVDDLLTPCSPGDPGAIEMTWMDV 399          
BLAST of CX290764 vs. ExPASy Swiss-Prot
Match: VPS4_SCHPO (Suppressor protein of bem1/bed5 double mutants OS=Schizosaccharomyces pombe GN=vps4 PE=2 SV=1)

HSP 1 Score: 271.166 bits (692), Expect = 3.563e-72
Identity = 142/223 (63.68%), Postives = 167/223 (74.89%), Query Frame = 1
Query:   19 LLYGPPGTGKSYLAKAVATEADSTFFSISSSDLVSKWMGESEKLVSSLFQMARESAPSIIFIDEIDSLCGQRGEGNESEASRRIKTELLVQMQGVGHNDQKVLVLAATNTPYALDQAIRRRFDKRIYIPLPDLKARQHMFKVHLGDTPHNLTESDFESLARKTEGFSGSDISVCVKDVLFEPVRKTQDAMFF-----FKTSNGMWMPCGPKQSGAVQISMQEL 672
            LLYGPPGTGKSYLAKAVATEA STFFSISSSDLVSKWMGESE+LV  LF+MARE  PSIIFIDEIDSLCG R EG ESE+SRRIKTE LVQM GVG ++  VLVL ATN P+ LD AIRRRF+KRIYIPLP+  AR  MF++++G  P  LT  DF+ LA+ T+G+SGSDIS+ V+D + EPVR+   A  F      K++  +  PC P    A + S  E+
Sbjct:  166 LLYGPPGTGKSYLAKAVATEAGSTFFSISSSDLVSKWMGESERLVRQLFEMAREQKPSIIFIDEIDSLCGSRSEG-ESESSRRIKTEFLVQMNGVGKDESGVLVLGATNIPWTLDSAIRRRFEKRIYIPLPNAHARARMFELNVGKIPSELTSQDFKELAKMTDGYSGSDISIVVRDAIMEPVRRIHTATHFKEVYDNKSNRTLVTPCSPGDPDAFESSWLEV 387          
BLAST of CX290764 vs. ExPASy Swiss-Prot
Match: VPS4_DICDI (Vacuolar protein sorting-associated protein 4 OS=Dictyostelium discoideum GN=vps4 PE=3 SV=1)

HSP 1 Score: 246.899 bits (629), Expect = 7.195e-65
Identity = 122/195 (62.56%), Postives = 152/195 (77.95%), Query Frame = 1
Query:   10 EAFLLYGPPGTGKSYLAKAVATEADSTFFSISSSDLVSKWMGESEKLVSSLFQMARESAPSIIFIDEIDSLCGQRGEGNESEASRRIKTELLVQMQGVGHNDQKVLVLAATNTPYALDQAIRRRFDKRIYIPLPDLKARQHMFKVHLGDTPHNLTESDFESLARKTEGFSGSDISVCVKDVLFEPVRKTQDAMFF 594
            +  LLYGPPGTGKSYLAKAVATE  STFFSIS SD+V+KW+G+SEKLV  LF+MARE   S+IFIDE+DSLC  R +  ESE++RRIKTE L+QM GVG++   +LVLAATN P+ LD AIRRRF+KRIYI LP+ +AR  MF++H+G TP+ L ++D++ LA  TEG+SGSDI   VKD + +PVR  Q A  F
Sbjct:  169 KGILLYGPPGTGKSYLAKAVATEISSTFFSISPSDIVTKWLGDSEKLVKQLFEMAREKNNSVIFIDEVDSLCSSRND-QESESARRIKTEFLIQMNGVGNDSDGILVLAATNIPWGLDLAIRRRFEKRIYIGLPEPQARAKMFQIHIGSTPNTLVQADYKKLADLTEGYSGSDIGSLVKDAIMQPVRAVQCATHF 362          
The following BLAST results are available for this feature:
BLAST of CX290764 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 397
Match NameE-valueIdentityDescription
VPS4_YEAST1.183e-7565.92Vacuolar protein sorting-associated protein 4 OS=S... [more]
VPS4B_MOUSE1.545e-7563.48Vacuolar protein sorting-associated protein 4B OS=... [more]
VPS4A_RAT3.443e-7562.17Vacuolar protein sorting-associated protein 4A OS=... [more]
VPS4A_MOUSE3.443e-7562.17Vacuolar protein sorting-associated protein 4A OS=... [more]
VPS4B_BOVIN5.872e-7563.48Vacuolar protein sorting-associated protein 4B OS=... [more]
VPS4A_HUMAN5.872e-7562.17Vacuolar protein sorting-associated protein 4A OS=... [more]
VPS4B_HUMAN1.002e-7463.48Vacuolar protein sorting-associated protein 4B OS=... [more]
VPS4B_PONAB2.914e-7463.04Vacuolar protein sorting-associated protein 4B OS=... [more]
VPS4_SCHPO3.563e-7263.68Suppressor protein of bem1/bed5 double mutants OS=... [more]
VPS4_DICDI7.195e-6562.56Vacuolar protein sorting-associated protein 4 OS=D... [more]

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Properties
Property NameValue
Genbank descriptionC02026H11SK IF1 Citrus clementina cDNA clone C02026H11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX290764 ID=CX290764; Name=CX290764; organism=Citrus clementina; type=EST; length=673bp
GATTCGGCCGAGGCTTTTCTATTGTATGGACCACCTGGAACTGGAAAGTC
ATACCTGGCCAAGGCTGTTGCAACTGAAGCCGACTCTACATTTTTCAGTA
TTTCTTCATCAGACCTGGTTTCAAAGTGGATGGGTGAAAGTGAAAAGCTT
GTCTCAAGCCTTTTCCAGATGGCTCGTGAAAGTGCTCCTTCCATTATTTT
TATTGATGAAATAGATTCCTTATGTGGTCAGCGTGGAGAAGGCAATGAGA
GCGAAGCTTCTCGGCGCATCAAAACTGAACTTCTTGTACAGATGCAGGGT
GTTGGACACAACGATCAGAAAGTTCTTGTTCTTGCTGCAACAAATACTCC
CTATGCTCTAGATCAGGCCATCCGGCGACGTTTTGACAAGCGTATATACA
TCCCTCTTCCAGATTTGAAGGCAAGACAGCACATGTTCAAGGTGCATTTA
GGAGATACACCCCACAACTTGACTGAAAGTGATTTTGAAAGTTTAGCTCG
CAAGACCGAGGGGTTTTCTGGTTCTGATATTTCCGTTTGTGTAAAGGATG
TCTTGTTTGAACCTGTACGGAAAACTCAGGATGCCATGTTTTTCTTTAAG
ACCTCTAATGGTATGTGGATGCCATGTGGACCGAAGCAATCAGGTGCTGT
TCAGATTTCGATGCAGGAGCTTG
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