CX290765

Overview
NameCX290765
Unique NameCX290765
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length570
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14124 contig Ccv1_Contig14124:810..1379. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX290765 vs. ExPASy Swiss-Prot
Match: VPS4B_MOUSE (Vacuolar protein sorting-associated protein 4B OS=Mus musculus GN=Vps4b PE=1 SV=2)

HSP 1 Score: 227.639 bits (579), Expect = 3.296e-59
Identity = 118/169 (69.82%), Postives = 142/169 (84.02%), Query Frame = 1
Query:    1 YLAKAVATEAD-STFFSISSSDLVSKWMVESEKLVSSLFQMARESAPSIIFIDEIDSLCGQRGEGNESKASRRIKTELLVQMQGVGHNDQKVLVLAATNTPYALDQAIRRRFDKRIYIPLPDLKARQLMFKVHLGDTPHNLTESDFESLARKTEGFSGSDISRLCKGCL 504
            YLAKAVATEA+ STFFSISSSDLVSKW+ ESEKLV +LFQ+ARE+ PSIIFIDEIDSLCG R E NES+A+RRIKTE LVQMQGVG ++  +LVL ATN P+ LD AIRRRF+KRIYIPLP+  AR  MF++HLG T ++LTE+DF+ L RKT+G+SG+DIS + +  L
Sbjct:  182 YLAKAVATEANNSTFFSISSSDLVSKWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSE-NESEAARRIKTEFLVQMQGVGVDNDGILVLGATNIPWVLDSAIRRRFEKRIYIPLPEAHARAAMFRLHLGSTQNSLTEADFQELGRKTDGYSGADISIIVRDAL 349          
BLAST of CX290765 vs. ExPASy Swiss-Prot
Match: VPS4B_BOVIN (Vacuolar protein sorting-associated protein 4B OS=Bos taurus GN=VPS4B PE=2 SV=1)

HSP 1 Score: 227.639 bits (579), Expect = 3.296e-59
Identity = 119/169 (70.41%), Postives = 141/169 (83.43%), Query Frame = 1
Query:    1 YLAKAVATEAD-STFFSISSSDLVSKWMVESEKLVSSLFQMARESAPSIIFIDEIDSLCGQRGEGNESKASRRIKTELLVQMQGVGHNDQKVLVLAATNTPYALDQAIRRRFDKRIYIPLPDLKARQLMFKVHLGDTPHNLTESDFESLARKTEGFSGSDISRLCKGCL 504
            YLAKAVATEA+ STFFSISSSDLVSKW+ ESEKLV +LFQ+ARE+ PSIIFIDEIDSLCG R E NES+A+RRIKTE LVQMQGVG ++  +LVL ATN P+ LD AIRRRF+KRIYIPLP+  AR  MFK+HLG T ++LTE+DF  L +KTEG+SG+DIS + +  L
Sbjct:  182 YLAKAVATEANNSTFFSISSSDLVSKWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSE-NESEAARRIKTEFLVQMQGVGVDNDGILVLGATNIPWVLDSAIRRRFEKRIYIPLPEAHARAAMFKLHLGTTQNSLTEADFRDLGKKTEGYSGADISIIVRDAL 349          
BLAST of CX290765 vs. ExPASy Swiss-Prot
Match: VPS4A_RAT (Vacuolar protein sorting-associated protein 4A OS=Rattus norvegicus GN=Vps4a PE=2 SV=1)

HSP 1 Score: 227.639 bits (579), Expect = 3.296e-59
Identity = 116/169 (68.64%), Postives = 141/169 (83.43%), Query Frame = 1
Query:    1 YLAKAVATEAD-STFFSISSSDLVSKWMVESEKLVSSLFQMARESAPSIIFIDEIDSLCGQRGEGNESKASRRIKTELLVQMQGVGHNDQKVLVLAATNTPYALDQAIRRRFDKRIYIPLPDLKARQLMFKVHLGDTPHNLTESDFESLARKTEGFSGSDISRLCKGCL 504
            YLAKAVATEA+ STFFS+SSSDL+SKW+ ESEKLV +LF++AR+  PSIIFIDE+DSLCG R E NES+A+RRIKTE LVQMQGVG+N+   LVL ATN P+ LD AIRRRF+KRIYIPLP+  AR  MF++HLG TPHNLT+++   LARKTEG+SG+DIS + +  L
Sbjct:  175 YLAKAVATEANNSTFFSVSSSDLMSKWLGESEKLVKNLFELARQHKPSIIFIDEVDSLCGSRNE-NESEAARRIKTEFLVQMQGVGNNNDGTLVLGATNIPWVLDSAIRRRFEKRIYIPLPEEAARAQMFRLHLGSTPHNLTDANIHELARKTEGYSGADISIIVRDSL 342          
BLAST of CX290765 vs. ExPASy Swiss-Prot
Match: VPS4A_MOUSE (Vacuolar protein sorting-associated protein 4A OS=Mus musculus GN=Vps4a PE=1 SV=1)

HSP 1 Score: 227.639 bits (579), Expect = 3.296e-59
Identity = 116/169 (68.64%), Postives = 141/169 (83.43%), Query Frame = 1
Query:    1 YLAKAVATEAD-STFFSISSSDLVSKWMVESEKLVSSLFQMARESAPSIIFIDEIDSLCGQRGEGNESKASRRIKTELLVQMQGVGHNDQKVLVLAATNTPYALDQAIRRRFDKRIYIPLPDLKARQLMFKVHLGDTPHNLTESDFESLARKTEGFSGSDISRLCKGCL 504
            YLAKAVATEA+ STFFS+SSSDL+SKW+ ESEKLV +LF++AR+  PSIIFIDE+DSLCG R E NES+A+RRIKTE LVQMQGVG+N+   LVL ATN P+ LD AIRRRF+KRIYIPLP+  AR  MF++HLG TPHNLT+++   LARKTEG+SG+DIS + +  L
Sbjct:  175 YLAKAVATEANNSTFFSVSSSDLMSKWLGESEKLVKNLFELARQHKPSIIFIDEVDSLCGSRNE-NESEAARRIKTEFLVQMQGVGNNNDGTLVLGATNIPWVLDSAIRRRFEKRIYIPLPEEAARAQMFRLHLGSTPHNLTDANIHELARKTEGYSGADISIIVRDSL 342          
BLAST of CX290765 vs. ExPASy Swiss-Prot
Match: VPS4A_HUMAN (Vacuolar protein sorting-associated protein 4A OS=Homo sapiens GN=VPS4A PE=1 SV=1)

HSP 1 Score: 227.639 bits (579), Expect = 3.296e-59
Identity = 116/169 (68.64%), Postives = 141/169 (83.43%), Query Frame = 1
Query:    1 YLAKAVATEAD-STFFSISSSDLVSKWMVESEKLVSSLFQMARESAPSIIFIDEIDSLCGQRGEGNESKASRRIKTELLVQMQGVGHNDQKVLVLAATNTPYALDQAIRRRFDKRIYIPLPDLKARQLMFKVHLGDTPHNLTESDFESLARKTEGFSGSDISRLCKGCL 504
            YLAKAVATEA+ STFFS+SSSDL+SKW+ ESEKLV +LF++AR+  PSIIFIDE+DSLCG R E NES+A+RRIKTE LVQMQGVG+N+   LVL ATN P+ LD AIRRRF+KRIYIPLP+  AR  MF++HLG TPHNLT+++   LARKTEG+SG+DIS + +  L
Sbjct:  175 YLAKAVATEANNSTFFSVSSSDLMSKWLGESEKLVKNLFELARQHKPSIIFIDEVDSLCGSRNE-NESEAARRIKTEFLVQMQGVGNNNDGTLVLGATNIPWVLDSAIRRRFEKRIYIPLPEEAARAQMFRLHLGSTPHNLTDANIHELARKTEGYSGADISIIVRDSL 342          
BLAST of CX290765 vs. ExPASy Swiss-Prot
Match: VPS4_YEAST (Vacuolar protein sorting-associated protein 4 OS=Saccharomyces cerevisiae GN=VPS4 PE=1 SV=1)

HSP 1 Score: 226.868 bits (577), Expect = 5.623e-59
Identity = 118/168 (70.24%), Postives = 139/168 (82.74%), Query Frame = 1
Query:    1 YLAKAVATEADSTFFSISSSDLVSKWMVESEKLVSSLFQMARESAPSIIFIDEIDSLCGQRGEGNESKASRRIKTELLVQMQGVGHNDQKVLVLAATNTPYALDQAIRRRFDKRIYIPLPDLKARQLMFKVHLGDTPHNLTESDFESLARKTEGFSGSDISRLCKGCL 504
            YLAKAVATEA+STFFS+SSSDLVSKWM ESEKLV  LF MARE+ PSIIFIDE+D+L G RGEG ES+ASRRIKTELLVQM GVG++ Q VLVL ATN P+ LD AIRRRF++RIYIPLPDL AR  MF++++GDTP  LT+ D+ +L   TEG+SGSDI+ + K  L
Sbjct:  181 YLAKAVATEANSTFFSVSSSDLVSKWMGESEKLVKQLFAMARENKPSIIFIDEVDALTGTRGEG-ESEASRRIKTELLVQMNGVGNDSQGVLVLGATNIPWQLDSAIRRRFERRIYIPLPDLAARTTMFEINVGDTPCVLTKEDYRTLGAMTEGYSGSDIAVVVKDAL 347          
BLAST of CX290765 vs. ExPASy Swiss-Prot
Match: VPS4B_HUMAN (Vacuolar protein sorting-associated protein 4B OS=Homo sapiens GN=VPS4B PE=1 SV=2)

HSP 1 Score: 226.868 bits (577), Expect = 5.623e-59
Identity = 119/169 (70.41%), Postives = 141/169 (83.43%), Query Frame = 1
Query:    1 YLAKAVATEAD-STFFSISSSDLVSKWMVESEKLVSSLFQMARESAPSIIFIDEIDSLCGQRGEGNESKASRRIKTELLVQMQGVGHNDQKVLVLAATNTPYALDQAIRRRFDKRIYIPLPDLKARQLMFKVHLGDTPHNLTESDFESLARKTEGFSGSDISRLCKGCL 504
            YLAKAVATEA+ STFFSISSSDLVSKW+ ESEKLV +LFQ+ARE+ PSIIFIDEIDSLCG R E NES+A+RRIKTE LVQMQGVG ++  +LVL ATN P+ LD AIRRRF+KRIYIPLP+  AR  MFK+HLG T ++LTE+DF  L RKT+G+SG+DIS + +  L
Sbjct:  182 YLAKAVATEANNSTFFSISSSDLVSKWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSE-NESEAARRIKTEFLVQMQGVGVDNDGILVLGATNIPWVLDSAIRRRFEKRIYIPLPEPHARAAMFKLHLGTTQNSLTEADFRELGRKTDGYSGADISIIVRDAL 349          
BLAST of CX290765 vs. ExPASy Swiss-Prot
Match: VPS4B_PONAB (Vacuolar protein sorting-associated protein 4B OS=Pongo abelii GN=VPS4B PE=2 SV=1)

HSP 1 Score: 225.328 bits (573), Expect = 1.636e-58
Identity = 118/169 (69.82%), Postives = 141/169 (83.43%), Query Frame = 1
Query:    1 YLAKAVATEAD-STFFSISSSDLVSKWMVESEKLVSSLFQMARESAPSIIFIDEIDSLCGQRGEGNESKASRRIKTELLVQMQGVGHNDQKVLVLAATNTPYALDQAIRRRFDKRIYIPLPDLKARQLMFKVHLGDTPHNLTESDFESLARKTEGFSGSDISRLCKGCL 504
            YLAKAVATEA+ STFFSISSSDLVSKW+ ESEKLV +LFQ+ARE+ PSIIFIDEIDSLCG R E NES+A+RRIKTE LVQM+GVG ++  +LVL ATN P+ LD AIRRRF+KRIYIPLP+  AR  MFK+HLG T ++LTE+DF  L RKT+G+SG+DIS + +  L
Sbjct:  182 YLAKAVATEANNSTFFSISSSDLVSKWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSE-NESEAARRIKTEFLVQMRGVGVDNDGILVLGATNIPWVLDSAIRRRFEKRIYIPLPEPHARAAMFKLHLGTTQNSLTEADFRELGRKTDGYSGADISIIVRDAL 349          
BLAST of CX290765 vs. ExPASy Swiss-Prot
Match: VPS4_SCHPO (Suppressor protein of bem1/bed5 double mutants OS=Schizosaccharomyces pombe GN=vps4 PE=2 SV=1)

HSP 1 Score: 219.55 bits (558), Expect = 8.977e-57
Identity = 114/161 (70.81%), Postives = 131/161 (81.37%), Query Frame = 1
Query:    1 YLAKAVATEADSTFFSISSSDLVSKWMVESEKLVSSLFQMARESAPSIIFIDEIDSLCGQRGEGNESKASRRIKTELLVQMQGVGHNDQKVLVLAATNTPYALDQAIRRRFDKRIYIPLPDLKARQLMFKVHLGDTPHNLTESDFESLARKTEGFSGSDIS 483
            YLAKAVATEA STFFSISSSDLVSKWM ESE+LV  LF+MARE  PSIIFIDEIDSLCG R EG ES++SRRIKTE LVQM GVG ++  VLVL ATN P+ LD AIRRRF+KRIYIPLP+  AR  MF++++G  P  LT  DF+ LA+ T+G+SGSDIS
Sbjct:  177 YLAKAVATEAGSTFFSISSSDLVSKWMGESERLVRQLFEMAREQKPSIIFIDEIDSLCGSRSEG-ESESSRRIKTEFLVQMNGVGKDESGVLVLGATNIPWTLDSAIRRRFEKRIYIPLPNAHARARMFELNVGKIPSELTSQDFKELAKMTDGYSGSDIS 336          
BLAST of CX290765 vs. ExPASy Swiss-Prot
Match: VPS4_DICDI (Vacuolar protein sorting-associated protein 4 OS=Dictyostelium discoideum GN=vps4 PE=3 SV=1)

HSP 1 Score: 204.912 bits (520), Expect = 2.288e-52
Identity = 102/168 (60.71%), Postives = 131/168 (77.98%), Query Frame = 1
Query:    1 YLAKAVATEADSTFFSISSSDLVSKWMVESEKLVSSLFQMARESAPSIIFIDEIDSLCGQRGEGNESKASRRIKTELLVQMQGVGHNDQKVLVLAATNTPYALDQAIRRRFDKRIYIPLPDLKARQLMFKVHLGDTPHNLTESDFESLARKTEGFSGSDISRLCKGCL 504
            YLAKAVATE  STFFSIS SD+V+KW+ +SEKLV  LF+MARE   S+IFIDE+DSLC  R +  ES+++RRIKTE L+QM GVG++   +LVLAATN P+ LD AIRRRF+KRIYI LP+ +AR  MF++H+G TP+ L ++D++ LA  TEG+SGSDI  L K  +
Sbjct:  183 YLAKAVATEISSTFFSISPSDIVTKWLGDSEKLVKQLFEMAREKNNSVIFIDEVDSLCSSRND-QESESARRIKTEFLIQMNGVGNDSDGILVLAATNIPWGLDLAIRRRFEKRIYIGLPEPQARAKMFQIHIGSTPNTLVQADYKKLADLTEGYSGSDIGSLVKDAI 349          
The following BLAST results are available for this feature:
BLAST of CX290765 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 368
Match NameE-valueIdentityDescription
VPS4B_MOUSE3.296e-5969.82Vacuolar protein sorting-associated protein 4B OS=... [more]
VPS4B_BOVIN3.296e-5970.41Vacuolar protein sorting-associated protein 4B OS=... [more]
VPS4A_RAT3.296e-5968.64Vacuolar protein sorting-associated protein 4A OS=... [more]
VPS4A_MOUSE3.296e-5968.64Vacuolar protein sorting-associated protein 4A OS=... [more]
VPS4A_HUMAN3.296e-5968.64Vacuolar protein sorting-associated protein 4A OS=... [more]
VPS4_YEAST5.623e-5970.24Vacuolar protein sorting-associated protein 4 OS=S... [more]
VPS4B_HUMAN5.623e-5970.41Vacuolar protein sorting-associated protein 4B OS=... [more]
VPS4B_PONAB1.636e-5869.82Vacuolar protein sorting-associated protein 4B OS=... [more]
VPS4_SCHPO8.977e-5770.81Suppressor protein of bem1/bed5 double mutants OS=... [more]
VPS4_DICDI2.288e-5260.71Vacuolar protein sorting-associated protein 4 OS=D... [more]

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Properties
Property NameValue
Genbank descriptionC02026H12SK IF1 Citrus clementina cDNA clone C02026H12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX290765 ID=CX290765; Name=CX290765; organism=Citrus clementina; type=EST; length=570bp
TACCTGGCCAAGGCTGTTGCAACTGAAGCCGACTCTACATTTTTCAGTAT
TTCTTCATCAGACCTGGTTTCAAAGTGGATGGTTGAAAGTGAAAAGCTTG
TCTCAAGCCTTTTCCAGATGGCTCGTGAAAGTGCTCCTTCCATTATTTTT
ATTGATGAAATAGATTCCTTATGTGGTCAGCGTGGAGAAGGCAATGAGAG
CAAAGCTTCTCGGCGCATCAAAACTGAACTTCTTGTACAGATGCAGGGTG
TTGGACACAACGATCAGAAAGTTCTTGTTCTTGCTGCAACAAATACTCCC
TATGCTCTAGATCAGGCCATCCGGCGACGTTTTGACAAGCGTATATACAT
CCCTCTTCCAGATTTGAAGGCAAGACAGCTCATGTTCAAGGTGCATTTAG
GAGATACACCCCACAACTTGACTGAAAGTGATTTTGAAAGTTTAGCTCGC
AAGACCGAGGGGTTTTCTGGCTCTGATATTTCCCGTTTGTGTAAAGGATG
TCTTGGTTGAACCTGTACAGAAAACTCAGGATGCCATGTTTTTCTTTAAG
ACCTCTAATGGTATGTGGAT
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