CX290765
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CX290765 vs. ExPASy Swiss-Prot
Match: VPS4B_MOUSE (Vacuolar protein sorting-associated protein 4B OS=Mus musculus GN=Vps4b PE=1 SV=2) HSP 1 Score: 227.639 bits (579), Expect = 3.296e-59 Identity = 118/169 (69.82%), Postives = 142/169 (84.02%), Query Frame = 1 Query: 1 YLAKAVATEAD-STFFSISSSDLVSKWMVESEKLVSSLFQMARESAPSIIFIDEIDSLCGQRGEGNESKASRRIKTELLVQMQGVGHNDQKVLVLAATNTPYALDQAIRRRFDKRIYIPLPDLKARQLMFKVHLGDTPHNLTESDFESLARKTEGFSGSDISRLCKGCL 504 YLAKAVATEA+ STFFSISSSDLVSKW+ ESEKLV +LFQ+ARE+ PSIIFIDEIDSLCG R E NES+A+RRIKTE LVQMQGVG ++ +LVL ATN P+ LD AIRRRF+KRIYIPLP+ AR MF++HLG T ++LTE+DF+ L RKT+G+SG+DIS + + L Sbjct: 182 YLAKAVATEANNSTFFSISSSDLVSKWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSE-NESEAARRIKTEFLVQMQGVGVDNDGILVLGATNIPWVLDSAIRRRFEKRIYIPLPEAHARAAMFRLHLGSTQNSLTEADFQELGRKTDGYSGADISIIVRDAL 349
BLAST of CX290765 vs. ExPASy Swiss-Prot
Match: VPS4B_BOVIN (Vacuolar protein sorting-associated protein 4B OS=Bos taurus GN=VPS4B PE=2 SV=1) HSP 1 Score: 227.639 bits (579), Expect = 3.296e-59 Identity = 119/169 (70.41%), Postives = 141/169 (83.43%), Query Frame = 1 Query: 1 YLAKAVATEAD-STFFSISSSDLVSKWMVESEKLVSSLFQMARESAPSIIFIDEIDSLCGQRGEGNESKASRRIKTELLVQMQGVGHNDQKVLVLAATNTPYALDQAIRRRFDKRIYIPLPDLKARQLMFKVHLGDTPHNLTESDFESLARKTEGFSGSDISRLCKGCL 504 YLAKAVATEA+ STFFSISSSDLVSKW+ ESEKLV +LFQ+ARE+ PSIIFIDEIDSLCG R E NES+A+RRIKTE LVQMQGVG ++ +LVL ATN P+ LD AIRRRF+KRIYIPLP+ AR MFK+HLG T ++LTE+DF L +KTEG+SG+DIS + + L Sbjct: 182 YLAKAVATEANNSTFFSISSSDLVSKWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSE-NESEAARRIKTEFLVQMQGVGVDNDGILVLGATNIPWVLDSAIRRRFEKRIYIPLPEAHARAAMFKLHLGTTQNSLTEADFRDLGKKTEGYSGADISIIVRDAL 349
BLAST of CX290765 vs. ExPASy Swiss-Prot
Match: VPS4A_RAT (Vacuolar protein sorting-associated protein 4A OS=Rattus norvegicus GN=Vps4a PE=2 SV=1) HSP 1 Score: 227.639 bits (579), Expect = 3.296e-59 Identity = 116/169 (68.64%), Postives = 141/169 (83.43%), Query Frame = 1 Query: 1 YLAKAVATEAD-STFFSISSSDLVSKWMVESEKLVSSLFQMARESAPSIIFIDEIDSLCGQRGEGNESKASRRIKTELLVQMQGVGHNDQKVLVLAATNTPYALDQAIRRRFDKRIYIPLPDLKARQLMFKVHLGDTPHNLTESDFESLARKTEGFSGSDISRLCKGCL 504 YLAKAVATEA+ STFFS+SSSDL+SKW+ ESEKLV +LF++AR+ PSIIFIDE+DSLCG R E NES+A+RRIKTE LVQMQGVG+N+ LVL ATN P+ LD AIRRRF+KRIYIPLP+ AR MF++HLG TPHNLT+++ LARKTEG+SG+DIS + + L Sbjct: 175 YLAKAVATEANNSTFFSVSSSDLMSKWLGESEKLVKNLFELARQHKPSIIFIDEVDSLCGSRNE-NESEAARRIKTEFLVQMQGVGNNNDGTLVLGATNIPWVLDSAIRRRFEKRIYIPLPEEAARAQMFRLHLGSTPHNLTDANIHELARKTEGYSGADISIIVRDSL 342
BLAST of CX290765 vs. ExPASy Swiss-Prot
Match: VPS4A_MOUSE (Vacuolar protein sorting-associated protein 4A OS=Mus musculus GN=Vps4a PE=1 SV=1) HSP 1 Score: 227.639 bits (579), Expect = 3.296e-59 Identity = 116/169 (68.64%), Postives = 141/169 (83.43%), Query Frame = 1 Query: 1 YLAKAVATEAD-STFFSISSSDLVSKWMVESEKLVSSLFQMARESAPSIIFIDEIDSLCGQRGEGNESKASRRIKTELLVQMQGVGHNDQKVLVLAATNTPYALDQAIRRRFDKRIYIPLPDLKARQLMFKVHLGDTPHNLTESDFESLARKTEGFSGSDISRLCKGCL 504 YLAKAVATEA+ STFFS+SSSDL+SKW+ ESEKLV +LF++AR+ PSIIFIDE+DSLCG R E NES+A+RRIKTE LVQMQGVG+N+ LVL ATN P+ LD AIRRRF+KRIYIPLP+ AR MF++HLG TPHNLT+++ LARKTEG+SG+DIS + + L Sbjct: 175 YLAKAVATEANNSTFFSVSSSDLMSKWLGESEKLVKNLFELARQHKPSIIFIDEVDSLCGSRNE-NESEAARRIKTEFLVQMQGVGNNNDGTLVLGATNIPWVLDSAIRRRFEKRIYIPLPEEAARAQMFRLHLGSTPHNLTDANIHELARKTEGYSGADISIIVRDSL 342
BLAST of CX290765 vs. ExPASy Swiss-Prot
Match: VPS4A_HUMAN (Vacuolar protein sorting-associated protein 4A OS=Homo sapiens GN=VPS4A PE=1 SV=1) HSP 1 Score: 227.639 bits (579), Expect = 3.296e-59 Identity = 116/169 (68.64%), Postives = 141/169 (83.43%), Query Frame = 1 Query: 1 YLAKAVATEAD-STFFSISSSDLVSKWMVESEKLVSSLFQMARESAPSIIFIDEIDSLCGQRGEGNESKASRRIKTELLVQMQGVGHNDQKVLVLAATNTPYALDQAIRRRFDKRIYIPLPDLKARQLMFKVHLGDTPHNLTESDFESLARKTEGFSGSDISRLCKGCL 504 YLAKAVATEA+ STFFS+SSSDL+SKW+ ESEKLV +LF++AR+ PSIIFIDE+DSLCG R E NES+A+RRIKTE LVQMQGVG+N+ LVL ATN P+ LD AIRRRF+KRIYIPLP+ AR MF++HLG TPHNLT+++ LARKTEG+SG+DIS + + L Sbjct: 175 YLAKAVATEANNSTFFSVSSSDLMSKWLGESEKLVKNLFELARQHKPSIIFIDEVDSLCGSRNE-NESEAARRIKTEFLVQMQGVGNNNDGTLVLGATNIPWVLDSAIRRRFEKRIYIPLPEEAARAQMFRLHLGSTPHNLTDANIHELARKTEGYSGADISIIVRDSL 342
BLAST of CX290765 vs. ExPASy Swiss-Prot
Match: VPS4_YEAST (Vacuolar protein sorting-associated protein 4 OS=Saccharomyces cerevisiae GN=VPS4 PE=1 SV=1) HSP 1 Score: 226.868 bits (577), Expect = 5.623e-59 Identity = 118/168 (70.24%), Postives = 139/168 (82.74%), Query Frame = 1 Query: 1 YLAKAVATEADSTFFSISSSDLVSKWMVESEKLVSSLFQMARESAPSIIFIDEIDSLCGQRGEGNESKASRRIKTELLVQMQGVGHNDQKVLVLAATNTPYALDQAIRRRFDKRIYIPLPDLKARQLMFKVHLGDTPHNLTESDFESLARKTEGFSGSDISRLCKGCL 504 YLAKAVATEA+STFFS+SSSDLVSKWM ESEKLV LF MARE+ PSIIFIDE+D+L G RGEG ES+ASRRIKTELLVQM GVG++ Q VLVL ATN P+ LD AIRRRF++RIYIPLPDL AR MF++++GDTP LT+ D+ +L TEG+SGSDI+ + K L Sbjct: 181 YLAKAVATEANSTFFSVSSSDLVSKWMGESEKLVKQLFAMARENKPSIIFIDEVDALTGTRGEG-ESEASRRIKTELLVQMNGVGNDSQGVLVLGATNIPWQLDSAIRRRFERRIYIPLPDLAARTTMFEINVGDTPCVLTKEDYRTLGAMTEGYSGSDIAVVVKDAL 347
BLAST of CX290765 vs. ExPASy Swiss-Prot
Match: VPS4B_HUMAN (Vacuolar protein sorting-associated protein 4B OS=Homo sapiens GN=VPS4B PE=1 SV=2) HSP 1 Score: 226.868 bits (577), Expect = 5.623e-59 Identity = 119/169 (70.41%), Postives = 141/169 (83.43%), Query Frame = 1 Query: 1 YLAKAVATEAD-STFFSISSSDLVSKWMVESEKLVSSLFQMARESAPSIIFIDEIDSLCGQRGEGNESKASRRIKTELLVQMQGVGHNDQKVLVLAATNTPYALDQAIRRRFDKRIYIPLPDLKARQLMFKVHLGDTPHNLTESDFESLARKTEGFSGSDISRLCKGCL 504 YLAKAVATEA+ STFFSISSSDLVSKW+ ESEKLV +LFQ+ARE+ PSIIFIDEIDSLCG R E NES+A+RRIKTE LVQMQGVG ++ +LVL ATN P+ LD AIRRRF+KRIYIPLP+ AR MFK+HLG T ++LTE+DF L RKT+G+SG+DIS + + L Sbjct: 182 YLAKAVATEANNSTFFSISSSDLVSKWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSE-NESEAARRIKTEFLVQMQGVGVDNDGILVLGATNIPWVLDSAIRRRFEKRIYIPLPEPHARAAMFKLHLGTTQNSLTEADFRELGRKTDGYSGADISIIVRDAL 349
BLAST of CX290765 vs. ExPASy Swiss-Prot
Match: VPS4B_PONAB (Vacuolar protein sorting-associated protein 4B OS=Pongo abelii GN=VPS4B PE=2 SV=1) HSP 1 Score: 225.328 bits (573), Expect = 1.636e-58 Identity = 118/169 (69.82%), Postives = 141/169 (83.43%), Query Frame = 1 Query: 1 YLAKAVATEAD-STFFSISSSDLVSKWMVESEKLVSSLFQMARESAPSIIFIDEIDSLCGQRGEGNESKASRRIKTELLVQMQGVGHNDQKVLVLAATNTPYALDQAIRRRFDKRIYIPLPDLKARQLMFKVHLGDTPHNLTESDFESLARKTEGFSGSDISRLCKGCL 504 YLAKAVATEA+ STFFSISSSDLVSKW+ ESEKLV +LFQ+ARE+ PSIIFIDEIDSLCG R E NES+A+RRIKTE LVQM+GVG ++ +LVL ATN P+ LD AIRRRF+KRIYIPLP+ AR MFK+HLG T ++LTE+DF L RKT+G+SG+DIS + + L Sbjct: 182 YLAKAVATEANNSTFFSISSSDLVSKWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSE-NESEAARRIKTEFLVQMRGVGVDNDGILVLGATNIPWVLDSAIRRRFEKRIYIPLPEPHARAAMFKLHLGTTQNSLTEADFRELGRKTDGYSGADISIIVRDAL 349
BLAST of CX290765 vs. ExPASy Swiss-Prot
Match: VPS4_SCHPO (Suppressor protein of bem1/bed5 double mutants OS=Schizosaccharomyces pombe GN=vps4 PE=2 SV=1) HSP 1 Score: 219.55 bits (558), Expect = 8.977e-57 Identity = 114/161 (70.81%), Postives = 131/161 (81.37%), Query Frame = 1 Query: 1 YLAKAVATEADSTFFSISSSDLVSKWMVESEKLVSSLFQMARESAPSIIFIDEIDSLCGQRGEGNESKASRRIKTELLVQMQGVGHNDQKVLVLAATNTPYALDQAIRRRFDKRIYIPLPDLKARQLMFKVHLGDTPHNLTESDFESLARKTEGFSGSDIS 483 YLAKAVATEA STFFSISSSDLVSKWM ESE+LV LF+MARE PSIIFIDEIDSLCG R EG ES++SRRIKTE LVQM GVG ++ VLVL ATN P+ LD AIRRRF+KRIYIPLP+ AR MF++++G P LT DF+ LA+ T+G+SGSDIS Sbjct: 177 YLAKAVATEAGSTFFSISSSDLVSKWMGESERLVRQLFEMAREQKPSIIFIDEIDSLCGSRSEG-ESESSRRIKTEFLVQMNGVGKDESGVLVLGATNIPWTLDSAIRRRFEKRIYIPLPNAHARARMFELNVGKIPSELTSQDFKELAKMTDGYSGSDIS 336
BLAST of CX290765 vs. ExPASy Swiss-Prot
Match: VPS4_DICDI (Vacuolar protein sorting-associated protein 4 OS=Dictyostelium discoideum GN=vps4 PE=3 SV=1) HSP 1 Score: 204.912 bits (520), Expect = 2.288e-52 Identity = 102/168 (60.71%), Postives = 131/168 (77.98%), Query Frame = 1 Query: 1 YLAKAVATEADSTFFSISSSDLVSKWMVESEKLVSSLFQMARESAPSIIFIDEIDSLCGQRGEGNESKASRRIKTELLVQMQGVGHNDQKVLVLAATNTPYALDQAIRRRFDKRIYIPLPDLKARQLMFKVHLGDTPHNLTESDFESLARKTEGFSGSDISRLCKGCL 504 YLAKAVATE STFFSIS SD+V+KW+ +SEKLV LF+MARE S+IFIDE+DSLC R + ES+++RRIKTE L+QM GVG++ +LVLAATN P+ LD AIRRRF+KRIYI LP+ +AR MF++H+G TP+ L ++D++ LA TEG+SGSDI L K + Sbjct: 183 YLAKAVATEISSTFFSISPSDIVTKWLGDSEKLVKQLFEMAREKNNSVIFIDEVDSLCSSRND-QESESARRIKTEFLIQMNGVGNDSDGILVLAATNIPWGLDLAIRRRFEKRIYIGLPEPQARAKMFQIHIGSTPNTLVQADYKKLADLTEGYSGSDIGSLVKDAI 349 The following BLAST results are available for this feature:
BLAST of CX290765 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 368
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Sequences
The
following sequences are available for this feature:
EST sequence >CX290765 ID=CX290765; Name=CX290765; organism=Citrus clementina; type=EST; length=570bpback to top |