CX290766

Overview
NameCX290766
Unique NameCX290766
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length581
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CX290766 vs. ExPASy Swiss-Prot
Match: AROK_ARATH (Shikimate kinase, chloroplastic OS=Arabidopsis thaliana GN=At2g21940 PE=2 SV=2)

HSP 1 Score: 88.5817 bits (218), Expect = 2.440e-17
Identity = 43/64 (67.19%), Postives = 51/64 (79.69%), Query Frame = 3 
Query:    9 FTRLSTLWEERGEAYANANARVSLENIAVKLGHKDVSSLTPVTIAIEALEQIEGFLKEEDDMAI 200
            F RLS +W+ERGEAY NANARVSLENIA K G+K+VS LTP  IAIEA EQ+  FL++E+ M I
Sbjct:  235 FKRLSAIWDERGEAYTNANARVSLENIAAKRGYKNVSDLTPTEIAIEAFEQVLSFLEKEETMEI 298
[Close]
BLAST of CX290766 vs. ExPASy Swiss-Prot
Match: AROK_SOLLC (Shikimate kinase, chloroplastic OS=Solanum lycopersicum PE=2 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 9.927e-11
Identity = 36/62 (58.06%), Postives = 44/62 (70.97%), Query Frame = 3 
Query:   15 RLSTLWEERGEAYANANARVSLENIAVKLGHKDVSSLTPVTIAIEALEQIEGFLKEEDDMAI 200
            RL+TL E RGE YANA+ARVSLENIA+K   KDV  +TP  I +E L QIE FLK +  + +
Sbjct:  239 RLTTLMETRGENYANASARVSLENIALK-REKDVCHITPAEITLEVLIQIENFLKTQKSVVV 299
The following BLAST results are available for this feature:
BLAST of CX290766 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
AROK_ARATH2.440e-1767.19Shikimate kinase, chloroplastic OS=Arabidopsis tha... [more]
AROK_SOLLC9.927e-1158.06Shikimate kinase, chloroplastic OS=Solanum lycoper... [more]
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Properties
Property NameValue
Genbank descriptionC02027A01SK IF1 Citrus clementina cDNA clone C02027A01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX290766 ID=CX290766; Name=CX290766; organism=Citrus clementina; type=EST; length=581bp
ACGAGGGCTTTACTCGACTGTCTACTCTTTGGGAAGAGAGAGGTGAAGCA
TATGCAAATGCTAATGCTAGGGTTTCCTTAGAAAATATTGCAGTAAAACT
CGGTCACAAAGATGTATCCAGTCTTACACCAGTTACCATTGCAATTGAGG
CACTTGAACAAATTGAGGGCTTTCTAAAGGAAGAGGATGACATGGCAATT
GCTGGATATTAACATCAAGAAACTTCTGATTTCGGTGCTTCTTCATTTTC
TTTGTCATTTGGGCATATAGGACAGTCCTAATTTTATCAGCAGAAGGCTT
GTTCATGTTATGCTTTTCCATCGCATTCATTGGGGTTGGCTCACAGTTAT
ACCAATGAAGATGCAGTTGTATATATCAGTTGGTACAATGTCAGCTGACC
CTGTGTAATATTAAGTTATGTGTGTAGATGAGATTTTATTCACCTCTGAG
TTCATGTATTCCACTCGCAAACTGTCTTAATGAAGCCTGGACCATGTTTA
GGCTTCTTAAATGGAAAAACGGAGTAATTTATTTGCTTGAGCAGAAAACA
TTTTTGGTTGAAAAAAAAAAAAAAAAAAAAA
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