CX290776

Overview
NameCX290776
Unique NameCX290776
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length704
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig320 contig Ccv1_Contig320:1..705. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX290776 vs. ExPASy Swiss-Prot
Match: AB13I_ARATH (Protein TRIGALACTOSYLDIACYLGLYCEROL 3, chloroplastic OS=Arabidopsis thaliana GN=TGD3 PE=1 SV=1)

HSP 1 Score: 188.348 bits (477), Expect = 2.076e-47
Identity = 98/131 (74.81%), Postives = 111/131 (84.73%), Query Frame = 1
Query:  286 QRKVVCACVAPPRDLGTDGFPATKFNDSSKSENVNTLFEP-EDDGDVLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIGLVFQ 675
            +RKV C C+APP++L  D   ATKF+  +KS          E+D DVLI+CR+VYKSFGEKHIL+GVSFKIRHGEAVG+IGPSGTGKSTILKI+AGLLAPDKGEVYIRG+KRAGLISDEEISGLRIGLVFQ
Sbjct:   40 RRKVSCCCIAPPQNLDND---ATKFDSLTKSGGGMCKERGLENDSDVLIECRDVYKSFGEKHILKGVSFKIRHGEAVGVIGPSGTGKSTILKIMAGLLAPDKGEVYIRGKKRAGLISDEEISGLRIGLVFQ 167          

HSP 2 Score: 22.3274 bits (46), Expect = 2.076e-47
Identity = 10/12 (83.33%), Postives = 11/12 (91.67%), Query Frame = 3
Query:  669 FPSAALFDSLTV 704
            F SAALFDSL+V
Sbjct:  166 FQSAALFDSLSV 177          
BLAST of CX290776 vs. ExPASy Swiss-Prot
Match: Y5533_VIBVU (Putative ABC transporter ATP-binding protein VV2_1533 OS=Vibrio vulnificus GN=VV2_1533 PE=3 SV=2)

HSP 1 Score: 71.633 bits (174), Expect = 4.516e-12
Identity = 37/87 (42.53%), Postives = 57/87 (65.52%), Query Frame = 1
Query:  418 DVLIDCRNVYKSF-GEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIGLVFQ 675
            + L+D RN+  S+ GEK+ L GVSF ++ GE V I+G +G+GKSTI K+I G++ PD G +Y+ G+  + L   E     ++G+V Q
Sbjct:  296 ETLLDVRNLTYSYDGEKNALEGVSFNVQRGEFVSILGKNGSGKSTITKLIMGVIEPDDGAIYLNGQDLSELTIFER--SQKVGVVMQ 380          
BLAST of CX290776 vs. ExPASy Swiss-Prot
Match: LOLD_BDEBA (Lipoprotein-releasing system ATP-binding protein lolD OS=Bdellovibrio bacteriovorus GN=lolD PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.516e-12
Identity = 43/92 (46.74%), Postives = 58/92 (63.04%), Query Frame = 1
Query:  439 NVYKSF----GEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLR---IGLVFQVRLFLT 693
            +++KS+    GE  ILRGVS  IR GEA  I+G SG GKST+L+I+  L  P+KGE+Y  GR    + SD+E+S  R   +G VFQ    L+
Sbjct:    5 DIHKSYSQGVGELEILRGVSLDIREGEAFAILGASGAGKSTLLQIMGTLDRPNKGELYCEGRDLLAM-SDDELSRFRNSEMGFVFQFHHLLS 95          
BLAST of CX290776 vs. ExPASy Swiss-Prot
Match: METN_BRUSU (Methionine import ATP-binding protein metN OS=Brucella suis GN=metN PE=3 SV=2)

HSP 1 Score: 70.4774 bits (171), Expect = 1.006e-11
Identity = 37/96 (38.54%), Postives = 56/96 (58.33%), Query Frame = 1
Query:  391 TLFEPEDDGDVLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDE-EISGLRIGLVFQ 675
            T+ +P      +++ ++V + FGE   + GVS  +  GE +GIIG SG GKST+++ + GL  PD G ++I GR+   L  D       RIG+VFQ
Sbjct:   19 TIEKPPATSAPIVEMKDVRRMFGETAAINGVSLSVARGEILGIIGRSGAGKSTLIRCVNGLEKPDTGSIHIEGREITSLDEDALRPVRRRIGMVFQ 114          
BLAST of CX290776 vs. ExPASy Swiss-Prot
Match: METN_BRUME (Methionine import ATP-binding protein metN OS=Brucella melitensis GN=metN PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.006e-11
Identity = 37/96 (38.54%), Postives = 56/96 (58.33%), Query Frame = 1
Query:  391 TLFEPEDDGDVLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDE-EISGLRIGLVFQ 675
            T+ +P      +++ ++V + FGE   + GVS  +  GE +GIIG SG GKST+++ + GL  PD G ++I GR+   L  D       RIG+VFQ
Sbjct:   19 TIEKPPATSAPIVEMKDVRRMFGETAAINGVSLSVARGEILGIIGRSGAGKSTLIRCVNGLEKPDTGSIHIEGREITSLDEDALRPVRRRIGMVFQ 114          
BLAST of CX290776 vs. ExPASy Swiss-Prot
Match: METN_BRUAB (Methionine import ATP-binding protein metN OS=Brucella abortus GN=metN PE=3 SV=2)

HSP 1 Score: 70.4774 bits (171), Expect = 1.006e-11
Identity = 37/96 (38.54%), Postives = 56/96 (58.33%), Query Frame = 1
Query:  391 TLFEPEDDGDVLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDE-EISGLRIGLVFQ 675
            T+ +P      +++ ++V + FGE   + GVS  +  GE +GIIG SG GKST+++ + GL  PD G ++I GR+   L  D       RIG+VFQ
Sbjct:   19 TIEKPPATSAPIVEMKDVRRMFGETAAINGVSLSVARGEILGIIGRSGAGKSTLIRCVNGLEKPDTGSIHIEGREITSLDEDALRPVRRRIGMVFQ 114          
BLAST of CX290776 vs. ExPASy Swiss-Prot
Match: METN_BRUA2 (Methionine import ATP-binding protein metN OS=Brucella abortus (strain 2308) GN=metN PE=3 SV=2)

HSP 1 Score: 70.4774 bits (171), Expect = 1.006e-11
Identity = 37/96 (38.54%), Postives = 56/96 (58.33%), Query Frame = 1
Query:  391 TLFEPEDDGDVLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDE-EISGLRIGLVFQ 675
            T+ +P      +++ ++V + FGE   + GVS  +  GE +GIIG SG GKST+++ + GL  PD G ++I GR+   L  D       RIG+VFQ
Sbjct:   19 TIEKPPATSAPIVEMKDVRRMFGETAAINGVSLSVARGEILGIIGRSGAGKSTLIRCVNGLEKPDTGSIHIEGREITSLDEDALRPVRRRIGMVFQ 114          
BLAST of CX290776 vs. ExPASy Swiss-Prot
Match: CYSA_METCA (Sulfate/thiosulfate import ATP-binding protein cysA OS=Methylococcus capsulatus GN=cysA PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.006e-11
Identity = 36/90 (40.00%), Postives = 51/90 (56.67%), Query Frame = 1
Query:  427 IDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIGLVFQVRLFLTH 696
            I+ RN+ KSFG    L+G+   I  GE V ++GPSG GK+T+L+IIAGL A D G++ + G       +   +   R+G VFQ      H
Sbjct:    3 IEIRNITKSFGSFQALKGIDLTIGSGELVALLGPSGCGKTTLLRIIAGLEAADSGQILLHGED----TTHRHVRERRVGFVFQHYALFRH 88          
BLAST of CX290776 vs. ExPASy Swiss-Prot
Match: MALK_MANSM (Maltose/maltodextrin import ATP-binding protein malK OS=Mannheimia succiniciproducens (strain MBEL55E) GN=malK PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.314e-11
Identity = 41/90 (45.56%), Postives = 56/90 (62.22%), Query Frame = 1
Query:  427 IDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIGLVFQVRLFLTH 696
            +  RNV KS+G+ HI + ++ +I  GE V  +GPSG GKST+L++IAGL     GE+YI G K   L++D E S   IG+VFQ      H
Sbjct:    4 VSLRNVGKSYGDVHISKDINLEINEGEFVVFVGPSGCGKSTLLRMIAGLEDITTGELYI-GEK---LMNDVEPSKRGIGMVFQSYALYPH 89          
BLAST of CX290776 vs. ExPASy Swiss-Prot
Match: CYSA_MESVI (Probable sulfate/thiosulfate import ATP-binding protein cysA OS=Mesostigma viride GN=cysA PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.314e-11
Identity = 36/85 (42.35%), Postives = 53/85 (62.35%), Query Frame = 1
Query:  421 VLIDCRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIGLVFQ 675
            +LID  N+ K FG    L  ++ +I+ G  + ++GPSG+GKST+L+IIAGL  PD+G ++I G+  +G      I    IG VFQ
Sbjct:    3 ILID--NISKKFGNFQALNHINLEIKSGSIIALLGPSGSGKSTLLRIIAGLDTPDEGTIWISGKNASGY----SIQSRNIGFVFQ 81          
The following BLAST results are available for this feature:
BLAST of CX290776 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 23
Match NameE-valueIdentityDescription
AB13I_ARATH2.076e-4774.81Protein TRIGALACTOSYLDIACYLGLYCEROL 3, chloroplast... [more]
Y5533_VIBVU4.516e-1242.53Putative ABC transporter ATP-binding protein VV2_1... [more]
LOLD_BDEBA4.516e-1246.74Lipoprotein-releasing system ATP-binding protein l... [more]
METN_BRUSU1.006e-1138.54Methionine import ATP-binding protein metN OS=Bruc... [more]
METN_BRUME1.006e-1138.54Methionine import ATP-binding protein metN OS=Bruc... [more]
METN_BRUAB1.006e-1138.54Methionine import ATP-binding protein metN OS=Bruc... [more]
METN_BRUA21.006e-1138.54Methionine import ATP-binding protein metN OS=Bruc... [more]
CYSA_METCA1.006e-1140.00Sulfate/thiosulfate import ATP-binding protein cys... [more]
MALK_MANSM1.314e-1145.56Maltose/maltodextrin import ATP-binding protein ma... [more]
CYSA_MESVI1.314e-1142.35Probable sulfate/thiosulfate import ATP-binding pr... [more]

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Properties
Property NameValue
Genbank descriptionC02027A11SK IF1 Citrus clementina cDNA clone C02027A11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX290776 ID=CX290776; Name=CX290776; organism=Citrus clementina; type=EST; length=704bp
ACGAGGAAATCCAAAATTATCAAAACCCAGTAGTCGAAATGCTTCGAAAA
CCACTTTTTATGTGAACTTCCATTGATTATTTTATTTTTTTCATTTTGTG
GTTTTTAGACCAAATATCAATCTGCGTCTGCTTTACAATTATAAACACCG
AAAATGGTCTCTTTATCTTCATCTGGTTCACTGTTATTTCCTCTCGCAAC
AAAAAGTGTTAGTTCTCGATTATCTAGACTTGCTAATTCGGACAAAAAAC
CGGTCAATTCGTTCTGTTATAAGGCGAAAGAAGAACAGAGAAAAGTTGTT
TGTGCTTGTGTAGCGCCTCCAAGGGACTTGGGCACTGATGGATTCCCTGC
CACCAAATTCAATGATTCATCTAAATCAGAGAATGTAAATACCTTATTCG
AACCCGAGGATGATGGTGATGTTCTCATCGATTGTCGGAATGTTTACAAG
TCATTTGGGGAAAAGCATATATTGAGAGGTGTGAGCTTCAAGATTAGACA
TGGTGAAGCTGTTGGTATAATAGGGCCTTCAGGCACTGGGAAATCAACGA
TTTTAAAGATTATTGCTGGGCTTCTTGCTCCAGACAAGGGAGAGGTTTAC
ATTCGAGGTAGGAAGAGAGCTGGTTTGATTAGCGATGAGGAGATATCTGG
TCTTCGGATTGGATTGGTTTTCCAAGTGCGGCTCTTTTTGACTCATTGAC
TGTC
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