CX290786

Overview
NameCX290786
Unique NameCX290786
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length544
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX290786_ssr52 microsatellite CX290786_ssr52:52..63. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig14235 contig Ccv1_Contig14235:14..557. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of CX290786 vs. ExPASy Swiss-Prot
Match: Y2309_ARATH (Uncharacterized protein At2g23090 OS=Arabidopsis thaliana GN=At2g23090 PE=1 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 2.494e-34
Identity = 67/78 (85.90%), Postives = 71/78 (91.03%), Query Frame = 1 
Query:   82 MGGGNGQKAKMAREKNLEKQKAANKGSQLETNKKAMSIQCKVCMQTFMCTTSEVKCREHAEAKHPKSDIYACFPHLKK 315
            MGGGN QK+ MAR KNLEK KAA KGSQLE NKKAMSIQCKVCMQTF+CTTSEVKCREHAEAKHPK+D+ ACFPHLKK
Sbjct:    1 MGGGNAQKSAMARAKNLEKAKAAGKGSQLEANKKAMSIQCKVCMQTFICTTSEVKCREHAEAKHPKADVVACFPHLKK 78
The following BLAST results are available for this feature:
BLAST of CX290786 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
Y2309_ARATH2.494e-3485.90Uncharacterized protein At2g23090 OS=Arabidopsis t... [more]
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Properties
Property NameValue
Genbank descriptionC02027B09SK IF1 Citrus clementina cDNA clone C02027B09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX290786 ID=CX290786; Name=CX290786; organism=Citrus clementina; type=EST; length=544bp
TCGGCCGAGGGATTAGGGTTTCGGGTGCTGCATCTTCCGATCTACCTATT
GATCAATCAATCAACTAGTTAGATTCAGGACATGGGAGGAGGCAACGGTC
AAAAGGCCAAGATGGCTCGTGAGAAGAATTTGGAGAAACAAAAAGCTGCC
AACAAAGGAAGCCAATTGGAAACAAACAAGAAAGCTATGTCGATCCAGTG
CAAGGTGTGTATGCAGACATTCATGTGCACGACTTCAGAGGTGAAGTGCA
GGGAGCATGCTGAAGCAAAGCACCCAAAGAGTGACATTTATGCCTGCTTC
CCCCATCTTAAGAAGTGATAAGAGTTTGGGGGAAAATATTATATGCCAGA
TATAGTTGGGGACATAATCTTCCTTATTGTATAGTGTTCCCTTTTCCAGC
AATACCTCAGATTAAGTGTGTTGCGGTTTGTAGAATCTGTTTGTTGCGGT
TTGTAGAATCTGTGTGTGCATGTGAAGAGGGACTGGTTCATTGTTCTGTT
TTAATGGAATTTGTGTAATGTTATGGTAAAAAAAAAAAAAAAAA
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