CX290813

Overview
NameCX290813
Unique NameCX290813
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length737
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig97 contig Ccv1_Contig97:280..1016. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CX290813 vs. ExPASy Swiss-Prot
Match: IF41_WHEAT (Eukaryotic initiation factor iso-4F subunit p82-34 OS=Triticum aestivum PE=1 SV=2)

HSP 1 Score: 192.586 bits (488), Expect = 1.893e-48
Identity = 102/213 (47.89%), Postives = 135/213 (63.38%), Query Frame = 2 
Query:    2 PSARPSGIASGVEPL---TQYTXXXXXXXXXXXXXXXXXXXXTKLNLADLRKKTVSLLEEYFSIRILDEALQCVEELRAPTYHPEVVKEAIALALEKIPPCVEPVIQLLEFLLNKNVLTTRDIGTGCLLYGSLLDDIGIDLPKAPNNFGEMVGKLVVAKSLDFIVLKEVLKKVEDNMFRRSIFTAAMKSIQSSPAGQEVLAVQGAEVQACESL 631
            P +RPS + +   PL   T  +                     K+  A L+KKT SLLEEYF IRILDEA QC+EEL++P YHPE+VKEAI LAL+K    V+P+++LLE L  K    T D+  GCLLYGSLL+DIGIDLPKAP  FGE+V +L+++  L F   + +LK +ED  FR++IFT+  K++ + PAGQ +L+   A V AC SL
Sbjct:  574 PPSRPSSLTASPTPLPAQTTASPKPSSATPASVPIPDKAASSAKVIPAGLQKKTASLLEEYFGIRILDEAQQCIEELQSPDYHPEIVKEAINLALDKGASFVDPLVKLLEHLYTKKTFKTEDLENGCLLYGSLLEDIGIDLPKAPTQFGEVVARLILSCGLRFEAAEGILKAMEDTFFRKAIFTSVTKTLGADPAGQAILSSHAAVVDACNSL 786
The following BLAST results are available for this feature:
BLAST of CX290813 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
IF41_WHEAT1.893e-4847.89Eukaryotic initiation factor iso-4F subunit p82-34... [more]
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Properties
Property NameValue
Genbank descriptionC02027D12SK IF1 Citrus clementina cDNA clone C02027D12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX290813 ID=CX290813; Name=CX290813; organism=Citrus clementina; type=EST; length=737bp
TCCTTCAGCCCGTCCTTCTGGAATTGCTTCAGGGGTTGAACCTTTAACTC
AATATACTAAGCCTGTTGCTCCTGCTGCATCAGTAGTTGCTTCTCCCGAG
AAGCCTTCAGCTCCTGTCACAAAATTAAATCTTGCTGATCTCCGCAAAAA
AACCGTATCGCTGCTTGAGGAATATTTCAGTATTCGAATTCTCGATGAAG
CACTGCAATGCGTTGAGGAACTGAGAGCCCCAACTTACCATCCAGAGGTT
GTTAAAGAAGCAATAGCCCTTGCCCTGGAAAAGATCCCACCGTGCGTGGA
ACCAGTCATACAGCTCCTTGAGTTTTTGCTGAATAAGAATGTCTTGACAA
CCAGAGACATAGGAACCGGCTGTCTTCTGTATGGCTCGTTATTAGATGAT
ATTGGCATTGATTTACCAAAAGCACCCAATAACTTTGGTGAGATGGTTGG
CAAGTTGGTTGTTGCGAAGAGTTTGGACTTCATTGTTTTGAAAGAAGTTC
TAAAGAAGGTGGAAGATAACATGTTCCGGAGATCCATTTTCACTGCCGCA
ATGAAGAGCATTCAGTCCAGCCCTGCTGGGCAAGAAGTGTTGGCAGTGCA
GGGAGCTGAGGTTCAGGCCTGCGAAAGTTTGCTCACATGATTTAAGAAGA
TGCTTTTCACGAGTCATACTCCCAATGCTTGCATGCTTCCTATATTTTTC
TAAATTTTGTCTCTCAATTACGTTTTCATGATCATGG
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