CX290818

Overview
NameCX290818
Unique NameCX290818
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length326
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX290818 vs. ExPASy Swiss-Prot
Match: EFGC_SOYBN (Elongation factor G, chloroplastic OS=Glycine max GN=FUSA PE=3 SV=1)

HSP 1 Score: 205.682 bits (522), Expect = 6.120e-53
Identity = 102/108 (94.44%), Postives = 105/108 (97.22%), Query Frame = 3
Query:    3 LAGFPVVDVRAALVDGSYHDVDSSVLAFQLAARGAFREGMRKAGPKMLEPIMKVEVVTPEEHLGDVIGDLNSRRGQINSFGDKPGGLKVVDALVPLAEMFQYVSALRG 326
            LAGFPVVDVRA L DGSYHDVDSSVLAFQLAARGAFREG+RKAGP+MLEPIMKVEVVTPEEHLGDVIGDLNSRRGQINSFGDKPGGLKVVD+LVPLAEMFQYVS LRG
Sbjct:  646 LAGFPVVDVRAVLTDGSYHDVDSSVLAFQLAARGAFREGIRKAGPRMLEPIMKVEVVTPEEHLGDVIGDLNSRRGQINSFGDKPGGLKVVDSLVPLAEMFQYVSTLRG 753          
BLAST of CX290818 vs. ExPASy Swiss-Prot
Match: EFG_MAGSA (Elongation factor G OS=Magnetospirillum magneticum (strain AMB-1 / ATCC 700264) GN=fusA PE=3 SV=1)

HSP 1 Score: 154.451 bits (389), Expect = 1.618e-37
Identity = 73/107 (68.22%), Postives = 92/107 (85.98%), Query Frame = 3
Query:    3 LAGFPVVDVRAALVDGSYHDVDSSVLAFQLAARGAFREGMRKAGPKMLEPIMKVEVVTPEEHLGDVIGDLNSRRGQINSFGDKPGGLKVVDALVPLAEMFQYVSALR 323
            +AGFP++D +A L DG+YHDVDSSVLAF++A+R AFREG+ KAGPK+LEP+MKVEVVTPE++LGDVIGDLNSRRGQ+N   D+ G  +V+ A+VPLA MF YV+ LR
Sbjct:  556 IAGFPMIDFKATLTDGAYHDVDSSVLAFEIASRAAFREGIAKAGPKLLEPMMKVEVVTPEDYLGDVIGDLNSRRGQVNDM-DQRGNARVITAMVPLANMFGYVNTLR 661          
BLAST of CX290818 vs. ExPASy Swiss-Prot
Match: EFG_RICTY (Elongation factor G OS=Rickettsia typhi GN=fusA PE=3 SV=2)

HSP 1 Score: 152.91 bits (385), Expect = 4.708e-37
Identity = 73/107 (68.22%), Postives = 92/107 (85.98%), Query Frame = 3
Query:    3 LAGFPVVDVRAALVDGSYHDVDSSVLAFQLAARGAFREGMRKAGPKMLEPIMKVEVVTPEEHLGDVIGDLNSRRGQINSFGDKPGGLKVVDALVPLAEMFQYVSALR 323
            +AG+P++D +A LVDG++HDVDSSVLAF++AA+GAFREGM+K  PK+LEPIMKVEV+TP+E++GD+IGDLNSRRGQI S  D  G  +VV A VPLAEMF YV+ LR
Sbjct:  563 VAGYPMIDFKATLVDGAFHDVDSSVLAFEIAAKGAFREGMQKGNPKLLEPIMKVEVITPDEYMGDIIGDLNSRRGQIQSM-DPRGNAQVVTAYVPLAEMFGYVNTLR 668          
BLAST of CX290818 vs. ExPASy Swiss-Prot
Match: EFG_RHORT (Elongation factor G OS=Rhodospirillum rubrum (strain ATCC 11170 / NCIB 8255) GN=fusA PE=3 SV=1)

HSP 1 Score: 152.91 bits (385), Expect = 4.708e-37
Identity = 74/107 (69.16%), Postives = 91/107 (85.05%), Query Frame = 3
Query:    3 LAGFPVVDVRAALVDGSYHDVDSSVLAFQLAARGAFREGMRKAGPKMLEPIMKVEVVTPEEHLGDVIGDLNSRRGQINSFGDKPGGLKVVDALVPLAEMFQYVSALR 323
            +AGFPV D++A+L+DG YHDVDSSVLAF++AAR AFREG+ KAGPK+LEPIMKVEVVTPE+++GDVIGDLNSRRG I    D+ G  +V+ A+VPLA MF YV+ LR
Sbjct:  554 IAGFPVTDMKASLIDGGYHDVDSSVLAFEIAARAAFREGLPKAGPKLLEPIMKVEVVTPEDYMGDVIGDLNSRRGNILGM-DQRGNARVIGAMVPLANMFGYVNTLR 659          
BLAST of CX290818 vs. ExPASy Swiss-Prot
Match: EFG_RICPR (Elongation factor G OS=Rickettsia prowazekii GN=fusA PE=3 SV=3)

HSP 1 Score: 151.369 bits (381), Expect = 1.370e-36
Identity = 72/107 (67.29%), Postives = 92/107 (85.98%), Query Frame = 3
Query:    3 LAGFPVVDVRAALVDGSYHDVDSSVLAFQLAARGAFREGMRKAGPKMLEPIMKVEVVTPEEHLGDVIGDLNSRRGQINSFGDKPGGLKVVDALVPLAEMFQYVSALR 323
            +AG+P++D +A LVDG++HDVDSSVLAF++AA+GAFREGM+K  PK+LEPIMKVEV+TP+E++GD+IGDLNSRRGQI +  D  G  +VV A VPLAEMF YV+ LR
Sbjct:  563 IAGYPMIDFKATLVDGAFHDVDSSVLAFEIAAKGAFREGMQKGNPKLLEPIMKVEVITPDEYMGDIIGDLNSRRGQIQNM-DPRGNAQVVTAHVPLAEMFGYVNTLR 668          
BLAST of CX290818 vs. ExPASy Swiss-Prot
Match: EFG_RICFE (Elongation factor G OS=Rickettsia felis GN=fusA PE=3 SV=2)

HSP 1 Score: 149.058 bits (375), Expect = 6.798e-36
Identity = 72/107 (67.29%), Postives = 90/107 (84.11%), Query Frame = 3
Query:    3 LAGFPVVDVRAALVDGSYHDVDSSVLAFQLAARGAFREGMRKAGPKMLEPIMKVEVVTPEEHLGDVIGDLNSRRGQINSFGDKPGGLKVVDALVPLAEMFQYVSALR 323
            +AG+P++D +A LVDG++HDVDSSVLAF++AA+ AFREGM K  PK+LEPIMKVEV+TP+E++GD+IGDLNSRRGQI S  D  G  +VV A VPLAEMF YV+ LR
Sbjct:  563 IAGYPMIDFKATLVDGAFHDVDSSVLAFEIAAKAAFREGMPKGNPKLLEPIMKVEVITPDEYMGDIIGDLNSRRGQIQSM-DPRGNAQVVTANVPLAEMFGYVNTLR 668          
BLAST of CX290818 vs. ExPASy Swiss-Prot
Match: EFG_RICHE (Elongation factor G OS=Rickettsia helvetica GN=fusA PE=3 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 8.878e-36
Identity = 72/107 (67.29%), Postives = 90/107 (84.11%), Query Frame = 3
Query:    3 LAGFPVVDVRAALVDGSYHDVDSSVLAFQLAARGAFREGMRKAGPKMLEPIMKVEVVTPEEHLGDVIGDLNSRRGQINSFGDKPGGLKVVDALVPLAEMFQYVSALR 323
            +AG+P++D +A LVDG++HDVDSSVLAF++AA+ AFREGM K  PK+LEPIMKVEV+TP+E++GD+IGDLNSRRGQI S  D  G  +VV A VPLAEMF YV+ LR
Sbjct:  563 IAGYPMIDFKATLVDGAFHDVDSSVLAFEIAAKAAFREGMPKGNPKLLEPIMKVEVITPDEYMGDIIGDLNSRRGQIQSM-DPRGNAQVVTANVPLAEMFGYVNMLR 668          
BLAST of CX290818 vs. ExPASy Swiss-Prot
Match: EFG_RICAH (Elongation factor G OS=Rickettsia akari (strain Hartford) GN=fusA PE=3 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 8.878e-36
Identity = 72/107 (67.29%), Postives = 90/107 (84.11%), Query Frame = 3
Query:    3 LAGFPVVDVRAALVDGSYHDVDSSVLAFQLAARGAFREGMRKAGPKMLEPIMKVEVVTPEEHLGDVIGDLNSRRGQINSFGDKPGGLKVVDALVPLAEMFQYVSALR 323
            +AG+P++D +A LVDG++HDVDSSVLAF++AA+ AFREGM K  PK+LEPIMKVEV+TP+E++GD+IGDLNSRRGQI S  D  G  +VV A VPLAEMF YV+ LR
Sbjct:  563 IAGYPMIDFKATLVDGAFHDVDSSVLAFEIAAKAAFREGMPKGDPKLLEPIMKVEVITPDEYMGDIIGDLNSRRGQIQSM-DPRGNAQVVTANVPLAEMFGYVNTLR 668          
BLAST of CX290818 vs. ExPASy Swiss-Prot
Match: EFG_RICSI (Elongation factor G OS=Rickettsia sibirica GN=fusA PE=3 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 1.978e-35
Identity = 71/107 (66.36%), Postives = 90/107 (84.11%), Query Frame = 3
Query:    3 LAGFPVVDVRAALVDGSYHDVDSSVLAFQLAARGAFREGMRKAGPKMLEPIMKVEVVTPEEHLGDVIGDLNSRRGQINSFGDKPGGLKVVDALVPLAEMFQYVSALR 323
            +AG+P++D +A LVDG++HDVDSSVLAF++AA+ AFREGM K  PK+LEPIM+VEV+TP+E++GD+IGDLNSRRGQI S  D  G  +VV A VPLAEMF YV+ LR
Sbjct:  563 IAGYPMIDFKATLVDGAFHDVDSSVLAFEIAAKAAFREGMPKGNPKLLEPIMQVEVITPDEYMGDIIGDLNSRRGQIQSM-DPRGNAQVVTANVPLAEMFGYVNTLR 668          
BLAST of CX290818 vs. ExPASy Swiss-Prot
Match: EFG_RICRS (Elongation factor G OS=Rickettsia rickettsii (strain Sheila Smith) GN=fusA PE=3 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 1.978e-35
Identity = 71/107 (66.36%), Postives = 90/107 (84.11%), Query Frame = 3
Query:    3 LAGFPVVDVRAALVDGSYHDVDSSVLAFQLAARGAFREGMRKAGPKMLEPIMKVEVVTPEEHLGDVIGDLNSRRGQINSFGDKPGGLKVVDALVPLAEMFQYVSALR 323
            +AG+P++D +A LVDG++HDVDSSVLAF++AA+ AFREGM K  PK+LEPIM+VEV+TP+E++GD+IGDLNSRRGQI S  D  G  +VV A VPLAEMF YV+ LR
Sbjct:  563 IAGYPMIDFKATLVDGAFHDVDSSVLAFEIAAKAAFREGMPKGNPKLLEPIMQVEVITPDEYMGDIIGDLNSRRGQIQSM-DPRGNAQVVTANVPLAEMFGYVNTLR 668          
The following BLAST results are available for this feature:
BLAST of CX290818 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
EFGC_SOYBN6.120e-5394.44Elongation factor G, chloroplastic OS=Glycine max ... [more]
EFG_MAGSA1.618e-3768.22Elongation factor G OS=Magnetospirillum magneticum... [more]
EFG_RICTY4.708e-3768.22Elongation factor G OS=Rickettsia typhi GN=fusA PE... [more]
EFG_RHORT4.708e-3769.16Elongation factor G OS=Rhodospirillum rubrum (stra... [more]
EFG_RICPR1.370e-3667.29Elongation factor G OS=Rickettsia prowazekii GN=fu... [more]
EFG_RICFE6.798e-3667.29Elongation factor G OS=Rickettsia felis GN=fusA PE... [more]
EFG_RICHE8.878e-3667.29Elongation factor G OS=Rickettsia helvetica GN=fus... [more]
EFG_RICAH8.878e-3667.29Elongation factor G OS=Rickettsia akari (strain Ha... [more]
EFG_RICSI1.978e-3566.36Elongation factor G OS=Rickettsia sibirica GN=fusA... [more]
EFG_RICRS1.978e-3566.36Elongation factor G OS=Rickettsia rickettsii (stra... [more]

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Properties
Property NameValue
Genbank descriptionC02027E05SK IF1 Citrus clementina cDNA clone C02027E05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX290818 ID=CX290818; Name=CX290818; organism=Citrus clementina; type=EST; length=326bp
TGCTTGCAGGCTTCCCTGTTGTTGACGTACGTGCTGCACTAGTTGATGGT
TCCTACCATGATGTTGATTCTAGTGTCTTGGCATTTCAACTTGCGGCCAG
GGGAGCTTTCAGGGAGGGCATGAGAAAGGCTGGCCCTAAAATGCTGGAAC
CTATAATGAAAGTCGAAGTTGTCACACCTGAAGAACACTTGGGAGATGTG
ATTGGTGATCTCAACTCGAGGAGAGGTCAGATCAACAGTTTTGGTGACAA
ACCTGGTGGTTTGAAGGTGGTTGATGCGCTGGTTCCACTGGCAGAAATGT
TCCAATATGTTAGTGCACTCCGAGGG
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