CX290819

Overview
NameCX290819
Unique NameCX290819
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length760
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX290819 vs. ExPASy Swiss-Prot
Match: CCD94_MOUSE (Coiled-coil domain-containing protein 94 OS=Mus musculus GN=Ccdc94 PE=1 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 2.214e-28
Identity = 57/111 (51.35%), Postives = 75/111 (67.57%), Query Frame = -2
Query:    1 PTDFDPSKIPRIR*KRNQQMSVCSMISMSIWCSTCGSFIYKWTKFNFRQEDVIGEKYLGIQIFRFYFKCTRCSAELTIKTDPQNSDYVVESGATVVLNLGVQRRLRKREPR 333
            P DFDPSKIP+++  +++Q  V  M   ++ C TCG +IYK  KFN R+E V  E YLG+ IFRFY KCTRC AE+T KTDP+N+DY +E GAT   N   ++ L + E R
Sbjct:   12 PPDFDPSKIPKLKLPKDRQYVVRLMAPFNMRCKTCGEYIYKGKKFNARKETVQNEAYLGLPIFRFYIKCTRCLAEITFKTDPENTDYTMEHGAT--RNFQAEKLLEEEEKR 120          

HSP 2 Score: 27.7202 bits (60), Expect = 2.214e-28
Identity = 11/12 (91.67%), Postives = 11/12 (91.67%), Query Frame = -3
Query:  330 MGERKVLNKYYP 365
            M ERKVLNKYYP
Sbjct:    1 MSERKVLNKYYP 12          
BLAST of CX290819 vs. ExPASy Swiss-Prot
Match: CCD94_HUMAN (Coiled-coil domain-containing protein 94 OS=Homo sapiens GN=CCDC94 PE=1 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 2.880e-28
Identity = 57/111 (51.35%), Postives = 75/111 (67.57%), Query Frame = -2
Query:    1 PTDFDPSKIPRIR*KRNQQMSVCSMISMSIWCSTCGSFIYKWTKFNFRQEDVIGEKYLGIQIFRFYFKCTRCSAELTIKTDPQNSDYVVESGATVVLNLGVQRRLRKREPR 333
            P DFDPSKIP+++  +++Q  V  M   ++ C TCG +IYK  KFN R+E V  E YLG+ IFRFY KCTRC AE+T KTDP+N+DY +E GAT   N   ++ L + E R
Sbjct:   12 PPDFDPSKIPKLKLPKDRQYVVRLMAPFNMRCKTCGEYIYKGKKFNARKETVQNEVYLGLPIFRFYIKCTRCLAEITFKTDPENTDYTMEHGAT--RNFQAEKLLEEEEKR 120          

HSP 2 Score: 27.7202 bits (60), Expect = 2.880e-28
Identity = 11/12 (91.67%), Postives = 11/12 (91.67%), Query Frame = -3
Query:  330 MGERKVLNKYYP 365
            M ERKVLNKYYP
Sbjct:    1 MSERKVLNKYYP 12          
BLAST of CX290819 vs. ExPASy Swiss-Prot
Match: CCD94_DICDI (Coiled-coil domain-containing protein 94 homolog OS=Dictyostelium discoideum GN=ccdc94 PE=3 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 3.685e-26
Identity = 56/104 (53.85%), Postives = 76/104 (73.08%), Query Frame = -2
Query:   52 G*KKSVE*VLPTDFDPSKIPRIR*KRNQQMSVCSMISMSIWCSTCGSFIYKWTKFNFRQEDVIGEKYLGIQIFRFYFKCTRCSAELTIKTDPQNSDYVVESGAT 363
            G +K +    P DFDPSK+ +I+ KR     V +M+ MSI C+TCG +I + TKFN ++E V  E YLGI+I+RF+ +C +C+AELTIKTDP+NS+YV ESGAT
Sbjct:    2 GERKVISKYYPPDFDPSKVAKIKVKRPTFTKVTTMLPMSIRCNTCGEYIGRGTKFNAKKETVQNEDYLGIKIYRFFLRCKKCAAELTIKTDPKNSEYVCESGAT 105          
BLAST of CX290819 vs. ExPASy Swiss-Prot
Match: CWF16_SCHPO (Cell cycle control protein cwf16 OS=Schizosaccharomyces pombe GN=cwf16 PE=1 SV=2)

HSP 1 Score: 95.9005 bits (237), Expect = 1.338e-20
Identity = 52/122 (42.62%), Postives = 75/122 (61.48%), Query Frame = -2
Query:    7 KKSVE*VLPTDFDPSKIPRIR*KRNQ-----QMSVCSMISMSIWCSTCGSFIYKWTKFNFRQEDVIGEKYLGIQIFRFYFKCTRCSAELTIKTDPQNSDYVVESGATVVLNLGVQRRLRKRE 357
            +K +   +P D+DPS  P  + K+ Q     +++V  M   S+ C TCG +IYK  KFN R+E   GEKY  I I RFY +CTRC+AE+T  TDP+++DY  ESGA+       ++RL++ E
Sbjct:    4 RKVLNKYIPPDYDPSIRPPKKKKKFQGPNGGKLTVRLMTPFSMRCHTCGEYIYKGKKFNARKEKT-GEKYFSIDILRFYIRCTRCAAEITFITDPKHADYAAESGASRNYEPWHEKRLQEYE 124          

HSP 2 Score: 24.6386 bits (52), Expect = 1.338e-20
Identity = 10/12 (83.33%), Postives = 10/12 (83.33%), Query Frame = -3
Query:  330 MGERKVLNKYYP 365
            M ERKVLNKY P
Sbjct:    1 MSERKVLNKYIP 12          
BLAST of CX290819 vs. ExPASy Swiss-Prot
Match: CWC16_YEAST (Protein CWC16 OS=Saccharomyces cerevisiae GN=YJU2 PE=1 SV=1)

HSP 1 Score: 62.7734 bits (151), Expect = 4.864e-11
Identity = 36/109 (33.03%), Postives = 60/109 (55.05%), Query Frame = -2
Query:   58 KKSVE*VLPTDFDPSKIPRIR*KRNQQM--------SVCSMISMSIWCSTCGSFIYKWTKFNFRQEDVIGEKYL-GIQIFRFYFKCTRCSAELTIKTDPQNSDYVVESG 357
            +K++    P D++P +  ++  K  +++        S+  M   S+ C  C  +I K  KFN ++E ++ EKYL  I+I+R    C RC+  +  +TDP NSDYV+E G
Sbjct:    4 RKAINKYYPPDYNPLEAEKLSRKMAKKLKTMNKSHASIRLMTPFSMRCLECNEYIPKSRKFNGKKE-LLKEKYLDSIKIYRLTISCPRCANSIAFRTDPGNSDYVMEVG 111          

HSP 2 Score: 25.409 bits (54), Expect = 4.864e-11
Identity = 9/12 (75.00%), Postives = 10/12 (83.33%), Query Frame = -3
Query:  330 MGERKVLNKYYP 365
            M ERK +NKYYP
Sbjct:    1 MSERKAINKYYP 12          
The following BLAST results are available for this feature:
BLAST of CX290819 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
CCD94_MOUSE2.214e-2851.35Coiled-coil domain-containing protein 94 OS=Mus mu... [more]
CCD94_HUMAN2.880e-2851.35Coiled-coil domain-containing protein 94 OS=Homo s... [more]
CCD94_DICDI3.685e-2653.85Coiled-coil domain-containing protein 94 homolog O... [more]
CWF16_SCHPO1.338e-2042.62Cell cycle control protein cwf16 OS=Schizosaccharo... [more]
CWC16_YEAST4.864e-1133.03Protein CWC16 OS=Saccharomyces cerevisiae GN=YJU2 ... [more]
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Properties
Property NameValue
Genbank descriptionC02027E06SK IF1 Citrus clementina cDNA clone C02027E06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX290819 ID=CX290819; Name=CX290819; organism=Citrus clementina; type=EST; length=760bp
ACGAGGCTCTCTCTTCCTCAGCCTCCTCTGCACGCCAAGGTTCAAAACTA
CAGTTGCACCAGACTCCACTACATAATCTGAATTTTGAGGATCCGTTTTT
ATTGTCAGCTCGGCTGAGCAACGTGTGCACTTAAAATAAAACCTAAATAT
TTGAATTCCTAGATACTTCTCGCCGATTACGTCTTCTTGGCGAAAATTAA
ATTTGGTCCATTTATAGATGAAACTGCCACAAGTGCTGCACCAGATGCTC
ATGGATATCATGGAACAAACACTCATTTGTTGGTTTCGTTTTCATCGAAT
CCTTGGAATTTTTGATGGATCAAAATCCGTGGGTAATACTTATTCAACAC
TTTTCTTTCACCCATTAGAAGAAAAGTAACGACAAAAAAGAGCAAGAAAA
CGAAGAACAAATACTTTGGGTGCAAATCGCACGCACTGATTATATTATAT
TTACAAAAGACCAGTCCTAGTTCCTATACACTCGTTCCATAAGGGTCAGA
GAGAGTGAATCTATTTTGAACTAAAATAATTCTTTTTCCTCATACAACTT
GAATTCTGTTTCAAATATGTCAACTTACTAACCCGAGCCGCTCCCTGTTT
TTTGGGATTTTGGGGCCCGGAATTAGTGGGGATTGAGCCTATCAAAGTTC
TTCTAACTGAAGGAGCCTCTTTTATAAGACAGTGATTAATTAAATGATGC
TGGTGGAGTATTTTTGTGAGCTGGCTTGATCTGAGTTGCTTTGATGTGTA
CATGCATACT
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