CX290822

Overview
NameCX290822
Unique NameCX290822
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length620
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX290822 vs. ExPASy Swiss-Prot
Match: YOU1_CAEEL (Putative transporter ZK637.1 OS=Caenorhabditis elegans GN=ZK637.1 PE=3 SV=5)

HSP 1 Score: 79.7221 bits (195), Expect = 1.294e-14
Identity = 39/109 (35.78%), Postives = 60/109 (55.05%), Query Frame = 3
Query:   57 SVYINVFITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTLQSNILLTALLSGARMFSMGTFIIANIFAPEIYPTSMRSTGAGVAYAVGRIGGMVCPLVA 383
            S Y ++  T+ AE PGL+   L+++  GRK +M + +    IF   L        +T L+  AR F  G F  A ++ PE+YPT++R+ G G   A+ RIG +V P +A
Sbjct:  370 SDYFDLLSTTLAEFPGLIITVLIIEWFGRKKTMALEYAVFAIFTFLLYFCLDRFTVTVLIFVARAFISGAFQCAYVYTPEVYPTTLRAVGLGTCSAMARIGAIVTPFIA 478          
BLAST of CX290822 vs. ExPASy Swiss-Prot
Match: SVOP_XENLA (Synaptic vesicle 2-related protein OS=Xenopus laevis GN=svop PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.294e-14
Identity = 41/113 (36.28%), Postives = 61/113 (53.98%), Query Frame = 3
Query:   63 YINVFITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTLQSNILLTALLSGARMFSMGTFIIANIFAPEIYPTSMRSTGAGVAYAVGRIGGMVCPLVAVGLVTS 401
            Y ++  T+ +E PGLL    ++DRVGRK +M I FI      L L       +LT  L  AR F  G F  A ++ PE+YPT+ R+ G G    + R+G ++ P +A  ++ S
Sbjct:  373 YTDLLWTTLSEFPGLLVTLWIIDRVGRKKTMAICFIIFSFSALLLFLCVGRNVLTVFLFIARAFISGGFQAAYVYTPEVYPTATRALGLGTCSGMARVGALITPFIAQVMLES 485          
BLAST of CX290822 vs. ExPASy Swiss-Prot
Match: SVOP_MOUSE (Synaptic vesicle 2-related protein OS=Mus musculus GN=Svop PE=1 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 2.882e-14
Identity = 48/147 (32.65%), Postives = 74/147 (50.34%), Query Frame = 3
Query:   63 YINVFITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTLQSNILLTALLSGARMFSMGTFIIANIFAPEIYPTSMRSTGAGVAYAVGRIGGMVCPLVA-VGLVTSCHQTXXXXXXXXXXXXXXXXXXXXPFETKGKEL 500
            Y+++  T+ +E PG+L    ++DR+GRK +M + FI   +  L L       +LT LL  AR F  G F  A ++ PE+YPT+ R+ G G    + R+G ++ P +A V L +S + T                    P ETKG+ L
Sbjct:  373 YMDLLWTTLSEFPGVLVTLWVIDRLGRKKTMALCFIIFSLCSLLLFICIGRNVLTLLLFIARAFISGGFQAAYVYTPEVYPTATRALGLGTCSGMARVGALITPFIAQVMLESSVYLT--LAVYSGCCLLAGVASCFLPIETKGRAL 517          
BLAST of CX290822 vs. ExPASy Swiss-Prot
Match: SVOP_RAT (Synaptic vesicle 2-related protein OS=Rattus norvegicus GN=Svop PE=1 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 3.764e-14
Identity = 47/147 (31.97%), Postives = 74/147 (50.34%), Query Frame = 3
Query:   63 YINVFITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTLQSNILLTALLSGARMFSMGTFIIANIFAPEIYPTSMRSTGAGVAYAVGRIGGMVCPLVA-VGLVTSCHQTXXXXXXXXXXXXXXXXXXXXPFETKGKEL 500
            Y+++  T+ +E PG+L    ++DR+GRK +M + F+   +  L L       +LT LL  AR F  G F  A ++ PE+YPT+ R+ G G    + R+G ++ P +A V L +S + T                    P ETKG+ L
Sbjct:  373 YMDLLWTTLSEFPGVLVTLWVIDRLGRKKTMALCFVIFSLCSLLLFICIGRNVLTLLLFIARAFISGGFQAAYVYTPEVYPTATRALGLGTCSGMARVGALITPFIAQVMLESSVYLT--LAVYSGCCLLAALASCFLPIETKGRAL 517          
BLAST of CX290822 vs. ExPASy Swiss-Prot
Match: SVOP_PONAB (Synaptic vesicle 2-related protein OS=Pongo abelii GN=SVOP PE=2 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 4.916e-14
Identity = 38/113 (33.63%), Postives = 63/113 (55.75%), Query Frame = 3
Query:   63 YINVFITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTLQSNILLTALLSGARMFSMGTFIIANIFAPEIYPTSMRSTGAGVAYAVGRIGGMVCPLVAVGLVTS 401
            Y+++  T+ +E PG+L    ++DR+GRK +M + F+      L L       +LT LL  AR F  G F  A ++ PE+YPT+ R+ G G    + R+G ++ P +A  ++ S
Sbjct:  373 YMDLLWTTLSEFPGVLVTLWIIDRLGRKKTMALCFVIFSFCSLLLFICVGRNVLTLLLFIARAFISGGFQAAYVYTPEVYPTATRALGLGTCSGMARVGALITPFIAQVMLES 485          
BLAST of CX290822 vs. ExPASy Swiss-Prot
Match: SVOP_HUMAN (Synaptic vesicle 2-related protein OS=Homo sapiens GN=SVOP PE=2 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 4.916e-14
Identity = 38/113 (33.63%), Postives = 63/113 (55.75%), Query Frame = 3
Query:   63 YINVFITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTLQSNILLTALLSGARMFSMGTFIIANIFAPEIYPTSMRSTGAGVAYAVGRIGGMVCPLVAVGLVTS 401
            Y+++  T+ +E PG+L    ++DR+GRK +M + F+      L L       +LT LL  AR F  G F  A ++ PE+YPT+ R+ G G    + R+G ++ P +A  ++ S
Sbjct:  373 YMDLLWTTLSEFPGVLVTLWIIDRLGRKKTMALCFVIFSFCSLLLFICVGRNVLTLLLFIARAFISGGFQAAYVYTPEVYPTATRALGLGTCSGMARVGALITPFIAQVMLES 485          
BLAST of CX290822 vs. ExPASy Swiss-Prot
Match: SVOP_BOVIN (Synaptic vesicle 2-related protein OS=Bos taurus GN=SVOP PE=2 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 4.916e-14
Identity = 38/113 (33.63%), Postives = 63/113 (55.75%), Query Frame = 3
Query:   63 YINVFITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTLQSNILLTALLSGARMFSMGTFIIANIFAPEIYPTSMRSTGAGVAYAVGRIGGMVCPLVAVGLVTS 401
            Y+++  T+ +E PG+L    ++DR+GRK +M + F+      L L       +LT LL  AR F  G F  A ++ PE+YPT+ R+ G G    + R+G ++ P +A  ++ S
Sbjct:  373 YMDLLWTTLSEFPGVLVTLWIIDRLGRKKTMALCFVVFSFCSLLLFICVGRNMLTLLLFIARAFISGGFQAAYVYTPEVYPTATRALGLGTCSGMARVGALITPFIAQVMLES 485          
BLAST of CX290822 vs. ExPASy Swiss-Prot
Match: S22A7_BOVIN (Solute carrier family 22 member 7 OS=Bos taurus GN=SLC22A7 PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 6.644e-11
Identity = 40/112 (35.71%), Postives = 59/112 (52.68%), Query Frame = 3
Query:   57 SVYINVFITSFAELPGLLTAALLVDRVGRKLSM--TIMFIFVCIFLLPLVTLQSNILLTALLSGARMFSMGTFIIANIFAPEIYPTSMRSTGAGVAYAVGRIGGMVCPLVAV 386
            +VY+   +    ELP  L   L V   GR+L+M  T++   + + L  LV+ +     TAL    + FS   F  A +F  E+YPT +R TG G+   VGR+GG + PL A+
Sbjct:  373 NVYLTQLVFGAVELPSKLLVYLSVRHAGRRLTMAGTLLGAALAVGLRILVSPEMKSWSTALAVMGKAFSEAAFTTAYLFTSELYPTVLRQTGMGLTALVGRLGGSLAPLAAL 484          
The following BLAST results are available for this feature:
BLAST of CX290822 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
YOU1_CAEEL1.294e-1435.78Putative transporter ZK637.1 OS=Caenorhabditis ele... [more]
SVOP_XENLA1.294e-1436.28Synaptic vesicle 2-related protein OS=Xenopus laev... [more]
SVOP_MOUSE2.882e-1432.65Synaptic vesicle 2-related protein OS=Mus musculus... [more]
SVOP_RAT3.764e-1431.97Synaptic vesicle 2-related protein OS=Rattus norve... [more]
SVOP_PONAB4.916e-1433.63Synaptic vesicle 2-related protein OS=Pongo abelii... [more]
SVOP_HUMAN4.916e-1433.63Synaptic vesicle 2-related protein OS=Homo sapiens... [more]
SVOP_BOVIN4.916e-1433.63Synaptic vesicle 2-related protein OS=Bos taurus G... [more]
S22A7_BOVIN6.644e-1135.71Solute carrier family 22 member 7 OS=Bos taurus GN... [more]
back to top
Properties
Property NameValue
Genbank descriptionC02027E09SK IF1 Citrus clementina cDNA clone C02027E09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX290822 ID=CX290822; Name=CX290822; organism=Citrus clementina; type=EST; length=620bp
GAGGGTCAAGTAAATGTAGCTCAAGCATCTTGCTTTCAGAAAATGTGCAG
GATGCTAGTGTCTACATAAATGTATTCATCACTAGCTTTGCAGAGCTACC
TGGACTTCTTACAGCTGCATTACTTGTGGACAGAGTGGGTCGCAAGCTTT
CCATGACAATTATGTTTATCTTTGTATGTATTTTCCTGCTTCCACTGGTT
ACACTTCAGTCCAACATTTTGCTAACAGCATTATTATCCGGAGCTCGCAT
GTTCTCTATGGGAACCTTTATTATCGCCAACATTTTTGCCCCCGAGATAT
ATCCAACTTCTATGAGATCAACTGGTGCTGGAGTTGCGTATGCTGTAGGA
AGGATTGGTGGTATGGTATGCCCTCTTGTAGCTGTTGGACTAGTGACTAG
TTGCCATCAAACAGCTGCAATACTTCTATTAGAGGCTCTTATTGTACTTT
CAGTAGTCGTTATTCTGCTTATCCCATTTGAAACCAAGGGAAAGGAATTG
GTTAACACTATTGATGGTGTATCAAACTCTAAACAAGTTTTAGTTGTTGC
ATAACAAATGTGTACACTTTCCCATAATAAAAGAACACATTTCAATTCAA
AAAAAAAAAAAAAAAAAAAA
back to top