CX290823

Overview
NameCX290823
Unique NameCX290823
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length682
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14142 contig Ccv1_Contig14142:291..972. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX290823 vs. ExPASy Swiss-Prot
Match: P4HA1_RAT (Prolyl 4-hydroxylase subunit alpha-1 OS=Rattus norvegicus GN=P4ha1 PE=2 SV=2)

HSP 1 Score: 86.2705 bits (212), Expect = 1.669e-16
Identity = 55/188 (29.26%), Postives = 93/188 (49.47%), Query Frame = 1
Query:  118 IINPSKVKQISWKPRAFVYEGFLTDLECDHLINLAKSQLKRSAVADNLSGESKLSDVRTSSGTFIPKGKDAIIAGIEDKIATWTFLPKENGEDIQVLRYEHGQKYEPHYDYF----SDKVNIVRGGHRLATVLMYLSDVAKGGETVFPNAEEPPRRRTPATNDDLSECAKKGIAVKPRRGDALLFFSL 669
            I+ P+K +    KPR   +   ++D E + + +LAK +L R+ V D  +G+   +  R S   ++   +D +++ I  +I   T L     E++QV  Y  G +YEPH+D+      D    +  G+R+AT L Y+SDV+ GG TVFP                       G +V P++G A+ +++L
Sbjct:  322 ILAPAKQEDEWDKPRIIRFHDIISDAEIEIVKDLAKPRLSRATVHDPETGKLTTAQYRVSKSAWLSGYEDPVVSRINMRIQDLTGLDVSTAEELQVANYGVGGQYEPHFDFARKDEPDAFRELGTGNRIATWLFYMSDVSAGGATVFPEV---------------------GASVWPKKGTAVFWYNL 488          
BLAST of CX290823 vs. ExPASy Swiss-Prot
Match: P4HA1_MOUSE (Prolyl 4-hydroxylase subunit alpha-1 OS=Mus musculus GN=P4ha1 PE=2 SV=2)

HSP 1 Score: 85.5001 bits (210), Expect = 2.847e-16
Identity = 53/188 (28.19%), Postives = 95/188 (50.53%), Query Frame = 1
Query:  118 IINPSKVKQISWKPRAFVYEGFLTDLECDHLINLAKSQLKRSAVADNLSGESKLSDVRTSSGTFIPKGKDAIIAGIEDKIATWTFLPKENGEDIQVLRYEHGQKYEPHYDYF----SDKVNIVRGGHRLATVLMYLSDVAKGGETVFPNAEEPPRRRTPATNDDLSECAKKGIAVKPRRGDALLFFSL 669
            I+ P+K +    KPR   +   ++D E + + +LAK +L+R+ +++ ++G  +    R S   ++   +D +++ I  +I   T L     E++QV  Y  G +YEPH+D+      D    +  G+R+AT L Y+SDV+ GG TVFP                       G +V P++G A+ +++L
Sbjct:  322 ILAPAKQEDEWDKPRIIRFHDIISDAEIEIVKDLAKPRLRRATISNPVTGALETVHYRISKSAWLSGYEDPVVSRINMRIQDLTGLDVSTAEELQVANYGVGGQYEPHFDFARKDEPDAFRELGTGNRIATWLFYMSDVSAGGATVFPEV---------------------GASVWPKKGTAVFWYNL 488          
BLAST of CX290823 vs. ExPASy Swiss-Prot
Match: P4HA1_PONAB (Prolyl 4-hydroxylase subunit alpha-1 OS=Pongo abelii GN=P4HA1 PE=2 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 3.719e-16
Identity = 52/188 (27.66%), Postives = 96/188 (51.06%), Query Frame = 1
Query:  118 IINPSKVKQISWKPRAFVYEGFLTDLECDHLINLAKSQLKRSAVADNLSGESKLSDVRTSSGTFIPKGKDAIIAGIEDKIATWTFLPKENGEDIQVLRYEHGQKYEPHYDYF----SDKVNIVRGGHRLATVLMYLSDVAKGGETVFPNAEEPPRRRTPATNDDLSECAKKGIAVKPRRGDALLFFSL 669
            I+ P+K +    KPR   +   ++D E + + +LAK +L+R+ +++ ++G+ +    R S   ++   ++ +++ I  +I   T L     E++QV  Y  G +YEPH+D+      D    +  G+R+AT L Y+SDV+ GG TVFP                       G +V P++G A+ +++L
Sbjct:  322 ILAPAKQEDEWDKPRIIRFHDIISDAEIEIVKDLAKPRLRRATISNPITGDLETVHYRISKSAWLSGYENPVVSRINMRIQDLTGLDVSTAEELQVANYGVGGQYEPHFDFARKDEPDAFKELGTGNRIATWLFYMSDVSAGGATVFPEV---------------------GASVWPKKGTAVFWYNL 488          
BLAST of CX290823 vs. ExPASy Swiss-Prot
Match: P4HA1_HUMAN (Prolyl 4-hydroxylase subunit alpha-1 OS=Homo sapiens GN=P4HA1 PE=1 SV=2)

HSP 1 Score: 85.1149 bits (209), Expect = 3.719e-16
Identity = 52/188 (27.66%), Postives = 96/188 (51.06%), Query Frame = 1
Query:  118 IINPSKVKQISWKPRAFVYEGFLTDLECDHLINLAKSQLKRSAVADNLSGESKLSDVRTSSGTFIPKGKDAIIAGIEDKIATWTFLPKENGEDIQVLRYEHGQKYEPHYDYF----SDKVNIVRGGHRLATVLMYLSDVAKGGETVFPNAEEPPRRRTPATNDDLSECAKKGIAVKPRRGDALLFFSL 669
            I+ P+K +    KPR   +   ++D E + + +LAK +L+R+ +++ ++G+ +    R S   ++   ++ +++ I  +I   T L     E++QV  Y  G +YEPH+D+      D    +  G+R+AT L Y+SDV+ GG TVFP                       G +V P++G A+ +++L
Sbjct:  322 ILAPAKQEDEWDKPRIIRFHDIISDAEIEIVKDLAKPRLRRATISNPITGDLETVHYRISKSAWLSGYENPVVSRINMRIQDLTGLDVSTAEELQVANYGVGGQYEPHFDFARKDEPDAFKELGTGNRIATWLFYMSDVSAGGATVFPEV---------------------GASVWPKKGTAVFWYNL 488          
BLAST of CX290823 vs. ExPASy Swiss-Prot
Match: P4HA1_BOVIN (Prolyl 4-hydroxylase subunit alpha-1 OS=Bos taurus GN=P4HA1 PE=1 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 6.343e-16
Identity = 52/188 (27.66%), Postives = 95/188 (50.53%), Query Frame = 1
Query:  118 IINPSKVKQISWKPRAFVYEGFLTDLECDHLINLAKSQLKRSAVADNLSGESKLSDVRTSSGTFIPKGKDAIIAGIEDKIATWTFLPKENGEDIQVLRYEHGQKYEPHYDYF----SDKVNIVRGGHRLATVLMYLSDVAKGGETVFPNAEEPPRRRTPATNDDLSECAKKGIAVKPRRGDALLFFSL 669
            I+ P+K +    KPR   +   ++D E + + +LAK +L+R+ +++ ++G+ +    R S   ++   ++ +++ I  +I   T L     E++QV  Y  G +YEPH+D+      D    +  G+R+AT L Y+SDV  GG TVFP                       G +V P++G A+ +++L
Sbjct:  322 ILAPAKQEDEWDKPRIIRFHDIISDAEIEVVKDLAKPRLRRATISNPITGDLETVHYRISKSAWLSGYENPVVSRINMRIQDLTGLDVSTAEELQVANYGVGGQYEPHFDFARKDEPDAFKELGTGNRIATWLFYMSDVLAGGATVFPEV---------------------GASVWPKKGTAVFWYNL 488          
BLAST of CX290823 vs. ExPASy Swiss-Prot
Match: P4HA2_CAEEL (Prolyl 4-hydroxylase subunit alpha-2 OS=Caenorhabditis elegans GN=phy-2 PE=1 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.082e-15
Identity = 53/187 (28.34%), Postives = 92/187 (49.20%), Query Frame = 1
Query:  127 PSKVKQISWKPRAFVYEGFLTDLECDHLINLAKSQLKRSAVADNLSGESKLSDVRTSSGTFIPKGKDAIIAGIEDKIATWTFLPKENGEDIQVLRYEHGQKYEPHYDYF----SDKVNIVRGGHRLATVLMYLSDVAKGGETVFPNAEEPPRRRTPATNDDLSECAKKGIAVKPRRGDALLFFSLTR 675
            P KV+ + + P A +++  + D E + +  LA  +LKR+ V ++ +GE + +  R S   ++    D +I  +  +I  +T L +   E++QV  Y  G  Y+PH+D+      +    +  G+R+ATVL Y+S   +GG TVF +                      G AV P + DAL +++L R
Sbjct:  315 PIKVEILRFDPLAVLFKNVIHDSEIEVIKELASPKLKRATVQNSKTGELEHATYRISKSAWLKGDLDPVIDRVNRRIEDFTNLNQATSEELQVANYGLGGHYDPHFDFARKEEKNAFKTLNTGNRIATVLFYMSQPERGGATVFNHL---------------------GTAVFPSKNDALFWYNLRR 480          
BLAST of CX290823 vs. ExPASy Swiss-Prot
Match: P4HA2_CHICK (Prolyl 4-hydroxylase subunit alpha-2 OS=Gallus gallus GN=P4HA2 PE=2 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.846e-15
Identity = 54/189 (28.57%), Postives = 92/189 (48.68%), Query Frame = 1
Query:  118 IINPSKVKQISWKPRAFVYEGFLTDLECDHLINLAKSQLKRSAVADNLSGESKLSDVRTSSGTFIPKGKDAIIAGIEDKIATWTFLPKENGEDIQVLRYEHGQKYEPHYDYFSDKVN--IVRGGHRLATVLMYLSDVAKGGETVFPNAEEPPRRRTPATNDDLSECAKKGIAVKPRRGDALLFFSLTRT 678
            +I P K +     P    Y   ++D E + +  LAK +L R+ V D  +G   ++  R S  +++ +  D ++A +  ++   T L  +  E +QV  Y  G +YEPH+D+     +  +   G+RLAT L Y+SDV  GG TVFP+                      G A+ P++G A+ +++L R+
Sbjct:  324 LIAPFKEEDEWDSPHIVRYYDVMSDEEIEKIKQLAKPKLARATVRDPKTGVLTVASYRVSKSSWLEEDDDPVVAKVNQRMQQITGLTVKTAELLQVANYGMGGQYEPHFDFSRRPFDSTLKSEGNRLATFLNYMSDVEAGGATVFPDF---------------------GAAIWPKKGTAVFWYNLFRS 491          
BLAST of CX290823 vs. ExPASy Swiss-Prot
Match: P4HA2_MOUSE (Prolyl 4-hydroxylase subunit alpha-2 OS=Mus musculus GN=P4ha2 PE=2 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 3.148e-15
Identity = 53/191 (27.75%), Postives = 92/191 (48.17%), Query Frame = 1
Query:  118 IINPSKVKQISWKPRAFVYEGFLTDLECDHLINLAKSQLKRSAVADNLSGESKLSDVRTSSGTFIPKGKDAIIAGIEDKIATWTFLPKENGEDIQVLRYEHGQKYEPHYDYF----SDKVNIVRGGHRLATVLMYLSDVAKGGETVFPNAEEPPRRRTPATNDDLSECAKKGIAVKPRRGDALLFFSLTRT 678
            +I P K +     P    Y   ++D E + +  +AK +L R+ V D  +G   ++  R S  +++ +  D ++A +  ++   T L  +  E +QV  Y  G +YEPH+D+      D    +  G+R+AT L Y+SDV  GG TVFP+                      G A+ P++G A+ +++L R+
Sbjct:  325 LIAPFKEEDEWDSPHIVRYYDVMSDEEIERIKEIAKPKLARATVRDPKTGVLTVASYRVSKSSWLEEDDDPVVARVNRRMQHITGLTVKTAELLQVANYGMGGQYEPHFDFSRSDDEDAFKRLGTGNRVATFLNYMSDVEAGGATVFPDL---------------------GAAIWPKKGTAVFWYNLLRS 494          
BLAST of CX290823 vs. ExPASy Swiss-Prot
Match: P4HA2_HUMAN (Prolyl 4-hydroxylase subunit alpha-2 OS=Homo sapiens GN=P4HA2 PE=1 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 5.370e-15
Identity = 53/191 (27.75%), Postives = 92/191 (48.17%), Query Frame = 1
Query:  118 IINPSKVKQISWKPRAFVYEGFLTDLECDHLINLAKSQLKRSAVADNLSGESKLSDVRTSSGTFIPKGKDAIIAGIEDKIATWTFLPKENGEDIQVLRYEHGQKYEPHYDYF----SDKVNIVRGGHRLATVLMYLSDVAKGGETVFPNAEEPPRRRTPATNDDLSECAKKGIAVKPRRGDALLFFSLTRT 678
            +I P K +     P    Y   ++D E + +  +AK +L R+ V D  +G   ++  R S  +++ +  D ++A +  ++   T L  +  E +QV  Y  G +YEPH+D+      D    +  G+R+AT L Y+SDV  GG TVFP+                      G A+ P++G A+ +++L R+
Sbjct:  323 LIAPFKEEDEWDSPHIVRYYDVMSDEEIERIKEIAKPKLARATVRDPKTGVLTVASYRVSKSSWLEEDDDPVVARVNRRMQHITGLTVKTAELLQVANYGVGGQYEPHFDFSRNDERDTFKHLGTGNRVATFLNYMSDVEAGGATVFPDL---------------------GAAIWPKKGTAVFWYNLLRS 492          
BLAST of CX290823 vs. ExPASy Swiss-Prot
Match: P4HA1_CHICK (Prolyl 4-hydroxylase subunit alpha-1 OS=Gallus gallus GN=P4HA1 PE=1 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 5.370e-15
Identity = 54/188 (28.72%), Postives = 90/188 (47.87%), Query Frame = 1
Query:  118 IINPSKVKQISWKPRAFVYEGFLTDLECDHLINLAKSQLKRSAVADNLSGESKLSDVRTSSGTFIPKGKDAIIAGIEDKIATWTFLPKENGEDIQVLRYEHGQKYEPHYDY----FSDKVNIVRGGHRLATVLMYLSDVAKGGETVFPNAEEPPRRRTPATNDDLSECAKKGIAVKPRRGDALLFFSL 669
            I+ P K +    KPR   +   ++D E + +  LAK +L R+ V D  +G+   +  R S   ++   +  +++ I  +I   T L     E++QV  Y  G +YEPH+D+      D    +  G+R+AT L Y+SDV+ GG TVFP                       G +V P++G A+ +++L
Sbjct:  304 ILGPVKQEDEWDKPRIVRFLDIISDEEIETVKELAKPRLSRATVHDPETGKLTTAHYRVSKSAWLSGYESPVVSRINTRIQDLTGLDVSTAEELQVANYGVGGQYEPHFDFGRKDEPDAFKELGTGNRIATWLFYMSDVSAGGATVFPEV---------------------GASVWPKKGTAVFWYNL 470          
The following BLAST results are available for this feature:
BLAST of CX290823 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 16
Match NameE-valueIdentityDescription
P4HA1_RAT1.669e-1629.26Prolyl 4-hydroxylase subunit alpha-1 OS=Rattus nor... [more]
P4HA1_MOUSE2.847e-1628.19Prolyl 4-hydroxylase subunit alpha-1 OS=Mus muscul... [more]
P4HA1_PONAB3.719e-1627.66Prolyl 4-hydroxylase subunit alpha-1 OS=Pongo abel... [more]
P4HA1_HUMAN3.719e-1627.66Prolyl 4-hydroxylase subunit alpha-1 OS=Homo sapie... [more]
P4HA1_BOVIN6.343e-1627.66Prolyl 4-hydroxylase subunit alpha-1 OS=Bos taurus... [more]
P4HA2_CAEEL1.082e-1528.34Prolyl 4-hydroxylase subunit alpha-2 OS=Caenorhabd... [more]
P4HA2_CHICK1.846e-1528.57Prolyl 4-hydroxylase subunit alpha-2 OS=Gallus gal... [more]
P4HA2_MOUSE3.148e-1527.75Prolyl 4-hydroxylase subunit alpha-2 OS=Mus muscul... [more]
P4HA2_HUMAN5.370e-1527.75Prolyl 4-hydroxylase subunit alpha-2 OS=Homo sapie... [more]
P4HA1_CHICK5.370e-1528.72Prolyl 4-hydroxylase subunit alpha-1 OS=Gallus gal... [more]

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Properties
Property NameValue
Genbank descriptionC02027E10SK IF1 Citrus clementina cDNA clone C02027E10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX290823 ID=CX290823; Name=CX290823; organism=Citrus clementina; type=EST; length=682bp
CCTCGTCTCTCATAATCGATCCAATCCACGCTCATGTCTCCCACAAGGCT
CTCTCTAAATTTCTTCTTCCTGCTCTCCTTCTCGTTGTTAATTCGCAAAT
CTTTCAGCTCTACCGCCATTATCAACCCATCTAAAGTCAAACAAATTTCT
TGGAAACCCAGGGCCTTTGTGTACGAGGGTTTTCTCACAGACTTAGAATG
CGATCACTTGATTAATCTTGCAAAATCTCAGCTGAAGAGATCAGCAGTTG
CTGATAATTTGAGTGGAGAGAGCAAGCTGAGCGATGTTCGAACAAGTTCT
GGGACCTTTATACCTAAAGGAAAGGATGCTATTATTGCTGGTATAGAGGA
CAAGATTGCAACATGGACGTTTCTTCCAAAAGAAAATGGGGAAGACATAC
AAGTACTAAGGTATGAGCACGGACAGAAATATGAACCACATTATGATTAC
TTCTCTGACAAGGTTAATATTGTTCGGGGCGGACACCGCCTAGCAACTGT
GCTAATGTATCTTTCCGATGTTGCTAAAGGTGGTGAGACAGTATTTCCCA
ATGCTGAGGAACCTCCACGTCGCAGAACTCCTGCTACCAATGACGATCTT
TCTGAATGTGCTAAGAAAGGAATTGCAGTGAAGCCACGAAGAGGGGATGC
TCTTCTTTTCTTCAGTCTCACACGAACGCTAT
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