CX290828
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX290828 vs. ExPASy Swiss-Prot
Match: TOP1_RICFE (DNA topoisomerase 1 OS=Rickettsia felis GN=topA PE=3 SV=1) HSP 1 Score: 101.679 bits (252), Expect = 4.326e-21 Identity = 59/192 (30.73%), Postives = 102/192 (53.12%), Query Frame = 1 Query: 13 QVEKMLEKTFGDSLFASLPNKNRSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNYIAKTLYGDDDEEDTLQRNTNVDEPKLIGHHPASKEKVLLKSGPYGFYVQLGEDRTGYLPKRASVSHIKDVDSITLEDALELLRYPVNLGNHPKDGQPIMLRLARAGFSVRHRRTIASVPKNMKPNDVTLEKALEFL 588 ++ ++K LF+ ++++CP C G L K+ +FGA F+ C+ +P C + + G+D+ E+ +E K++G E + LK GPYG YVQLGE PKR+ V + + ITLE AL+LL P+ +G H G+ IM+ + G +++ S+PK +++L+ A++ + Sbjct: 577 EIISYVQKALDYHLFSE-NKESKACPSCKTGELSLKLGKFGA--FLACSNYPECTFRKSIVSGNDNNENDGDLAATPNENKVLGTDKDGIE-IYLKKGPYGPYVQLGEQEGKVKPKRSPVPASLNQNDITLEMALKLLSLPLKIGIHKDSGEEIMIGYGKFGPYIKYMGKFISIPKKYDFLNLSLDDAMKLI 764
BLAST of CX290828 vs. ExPASy Swiss-Prot
Match: TOP1_RICTY (DNA topoisomerase 1 OS=Rickettsia typhi GN=topA PE=3 SV=1) HSP 1 Score: 101.293 bits (251), Expect = 5.650e-21 Identity = 60/192 (31.25%), Postives = 101/192 (52.60%), Query Frame = 1 Query: 13 QVEKMLEKTFGDSLFASLPNKNRSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNYIAKTLYGDDDEEDTLQRNTNVDEPKLIGHHPASKEKVLLKSGPYGFYVQLGEDRTGYLPKRASVSHIKDVDSITLEDALELLRYPVNLGNHPKDGQPIMLRLARAGFSVRHRRTIASVPKNMKPNDVTLEKALEFL 588 ++ L+K LF +++ CP C G L K+ +FGA F+ C+ +P C + + G+D+ ED +T +++ K++G E + LK+GPYG Y+QLGE PKR V ITLE AL+LL P+ +G H G+ I++ ++ G +++ SVPK ++ L+ A++ + Sbjct: 577 EIINYLQKALDYHLFGE-NKESKVCPSCKTGQLSLKLGKFGA--FLACSNYPECTFKKSIVSGNDNNEDEGNLSTILNDNKILGTDKDGVE-IYLKTGPYGPYIQLGEQCGKVKPKRTPVPTNLKQSEITLEVALKLLSLPLKIGIHKDSGEEIIIGYSKFGPYIKYMCKFISVPKKYDFLNLNLDDAIKLI 764
BLAST of CX290828 vs. ExPASy Swiss-Prot
Match: TOP1_RICPR (DNA topoisomerase 1 OS=Rickettsia prowazekii GN=topA PE=3 SV=1) HSP 1 Score: 101.293 bits (251), Expect = 5.650e-21 Identity = 60/192 (31.25%), Postives = 100/192 (52.08%), Query Frame = 1 Query: 13 QVEKMLEKTFGDSLFASLPNKNRSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNYIAKTLYGDDDEEDTLQRNTNVDEPKLIGHHPASKEKVLLKSGPYGFYVQLGEDRTGYLPKRASVSHIKDVDSITLEDALELLRYPVNLGNHPKDGQPIMLRLARAGFSVRHRRTIASVPKNMKPNDVTLEKALEFL 588 ++ L+K LF +++ CP C G L K+ +FGA F+ C+ +P C + + G+D+ ED +T +++ K++G E + LK GPYG Y+QLGE PKR V ITLE AL+LL P+ +G H G+ I++ ++ G +++ SVPK +++L A++ + Sbjct: 577 EIINYLQKALDYHLFGE-DKESKVCPSCKTGQLSLKLGKFGA--FLACSNYPECTFKKSIVSGNDNNEDEGDPSTILNDNKILGTDQDGVE-IYLKKGPYGPYIQLGEQCGKVKPKRTPVPANLKQSEITLEIALKLLNLPLKIGIHKDSGEEIIIGYSKFGPYIKYMCKFISVPKKYDFLNLSLNDAMKLI 764
BLAST of CX290828 vs. ExPASy Swiss-Prot
Match: TOP1_RICBR (DNA topoisomerase 1 OS=Rickettsia bellii (strain RML369-C) GN=topA PE=3 SV=1) HSP 1 Score: 98.9821 bits (245), Expect = 2.804e-20 Identity = 54/175 (30.86%), Postives = 97/175 (55.43%), Query Frame = 1 Query: 76 NRSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNYIAKTLYGDDDEEDTLQRNTNVDEPKLIGHHPASKEKVLLKSGPYGFYVQLGEDRTGYL-PKRASVSHIKDVDSITLEDALELLRYPVNLGNHPKDGQPIMLRLARAGFSVRHRRTIASVPKNMKPNDVTLEKALEFLSGK 597 ++ CP C G L K+ +FGA F+ C+ +P CN+ + G+D+ E + V+E K++G E + LK GPYG Y+Q GE + PKR+ + + + ITL+ AL+LL P+ +GNH + G+ +++ + G +++ S+PK +++L+ A++ + K Sbjct: 597 SKVCPSCKTGELSLKLGKFGA--FLACSNYPECNFRKSIVSGNDNNEADGEAKDIVNENKVLGKDKEGIE-IYLKKGPYGPYIQYGEQVDSKIKPKRSPLPAGLNQNDITLDMALKLLSLPLKIGNHKESGEEVLVGYGKFGPYIKYMGKFISIPKKYDFLNLSLDDAMKLIEEK 768
BLAST of CX290828 vs. ExPASy Swiss-Prot
Match: TOP1_RICCN (DNA topoisomerase 1 OS=Rickettsia conorii GN=topA PE=3 SV=1) HSP 1 Score: 92.8189 bits (229), Expect = 2.010e-18 Identity = 52/172 (30.23%), Postives = 92/172 (53.49%), Query Frame = 1 Query: 73 KNRSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNYIAKTLYGDDDEEDTLQRNTNVDEPKLIGHHPASKEKVLLKSGPYGFYVQLGEDRTGYLPKRASVSHIKDVDSITLEDALELLRYPVNLGNHPKDGQPIMLRLARAGFSVRHRRTIASVPKNMKPNDVTLEKALEFL 588 +++ CP C G L K+ +FGA F+ C+ +P C + + G+D+ E+ + +E K++G E + LK GPYG Y+QLG+ PKR+ V + + ITL+ AL+LL P+ +G H + IM+ + G +++ SV K +++L+ A++ + Sbjct: 596 ESKICPSCNTGELSLKLGKFGA--FLACSNYPECTFRKSIVSGNDNNENEGEPAAMPNENKVLGTDKDGVE-IYLKKGPYGPYIQLGKQEGKVKPKRSPVPASLNQNDITLDIALKLLSLPLKIGIHKDSDEEIMIGYGKFGPYIKYMGQFISVQKKYDFLNLSLDDAMKLI 764
BLAST of CX290828 vs. ExPASy Swiss-Prot
Match: TOP1_SYNY3 (DNA topoisomerase 1 OS=Synechocystis sp. (strain PCC 6803) GN=topA PE=3 SV=1) HSP 1 Score: 67.781 bits (164), Expect = 6.923e-11 Identity = 45/120 (37.50%), Postives = 64/120 (53.33%), Query Frame = 1 Query: 250 PKLIGHHPASKEKVLLKSGPYGFYVQLGE-DRTGYLPKRASVSHIKDVDSITLEDALELLRYPVNLGNHPKDGQPIMLRLARAG-FSVRHRRTIASVPKNMKPND----VTLEKALEFLS 591 P +G HP + E + + G YG YVQLGE PKR S+ + +TLE A+ LL P NLG HP+ G+ I L R G + V + +++K +D +TLE+ALE L+ Sbjct: 657 PDKVGIHPETGEPIFILIGAYGPYVQLGEATEENKKPKRTSLPKGVKPEDVTLEMAVGLLALPRNLGEHPESGKNIKASLGRFGPYVVHDQGKDGKDYRSLKGDDDVLTITLERALELLA 776 The following BLAST results are available for this feature:
BLAST of CX290828 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 6
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >CX290828 ID=CX290828; Name=CX290828; organism=Citrus clementina; type=EST; length=729bpback to top |