CX290828

Overview
NameCX290828
Unique NameCX290828
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length729
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX290828 vs. ExPASy Swiss-Prot
Match: TOP1_RICFE (DNA topoisomerase 1 OS=Rickettsia felis GN=topA PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 4.326e-21
Identity = 59/192 (30.73%), Postives = 102/192 (53.12%), Query Frame = 1
Query:   13 QVEKMLEKTFGDSLFASLPNKNRSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNYIAKTLYGDDDEEDTLQRNTNVDEPKLIGHHPASKEKVLLKSGPYGFYVQLGEDRTGYLPKRASVSHIKDVDSITLEDALELLRYPVNLGNHPKDGQPIMLRLARAGFSVRHRRTIASVPKNMKPNDVTLEKALEFL 588
            ++   ++K     LF+    ++++CP C  G L  K+ +FGA  F+ C+ +P C +    + G+D+ E+        +E K++G      E + LK GPYG YVQLGE      PKR+ V    + + ITLE AL+LL  P+ +G H   G+ IM+   + G  +++     S+PK     +++L+ A++ +
Sbjct:  577 EIISYVQKALDYHLFSE-NKESKACPSCKTGELSLKLGKFGA--FLACSNYPECTFRKSIVSGNDNNENDGDLAATPNENKVLGTDKDGIE-IYLKKGPYGPYVQLGEQEGKVKPKRSPVPASLNQNDITLEMALKLLSLPLKIGIHKDSGEEIMIGYGKFGPYIKYMGKFISIPKKYDFLNLSLDDAMKLI 764          
BLAST of CX290828 vs. ExPASy Swiss-Prot
Match: TOP1_RICTY (DNA topoisomerase 1 OS=Rickettsia typhi GN=topA PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 5.650e-21
Identity = 60/192 (31.25%), Postives = 101/192 (52.60%), Query Frame = 1
Query:   13 QVEKMLEKTFGDSLFASLPNKNRSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNYIAKTLYGDDDEEDTLQRNTNVDEPKLIGHHPASKEKVLLKSGPYGFYVQLGEDRTGYLPKRASVSHIKDVDSITLEDALELLRYPVNLGNHPKDGQPIMLRLARAGFSVRHRRTIASVPKNMKPNDVTLEKALEFL 588
            ++   L+K     LF     +++ CP C  G L  K+ +FGA  F+ C+ +P C +    + G+D+ ED    +T +++ K++G      E + LK+GPYG Y+QLGE      PKR  V        ITLE AL+LL  P+ +G H   G+ I++  ++ G  +++     SVPK     ++ L+ A++ +
Sbjct:  577 EIINYLQKALDYHLFGE-NKESKVCPSCKTGQLSLKLGKFGA--FLACSNYPECTFKKSIVSGNDNNEDEGNLSTILNDNKILGTDKDGVE-IYLKTGPYGPYIQLGEQCGKVKPKRTPVPTNLKQSEITLEVALKLLSLPLKIGIHKDSGEEIIIGYSKFGPYIKYMCKFISVPKKYDFLNLNLDDAIKLI 764          
BLAST of CX290828 vs. ExPASy Swiss-Prot
Match: TOP1_RICPR (DNA topoisomerase 1 OS=Rickettsia prowazekii GN=topA PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 5.650e-21
Identity = 60/192 (31.25%), Postives = 100/192 (52.08%), Query Frame = 1
Query:   13 QVEKMLEKTFGDSLFASLPNKNRSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNYIAKTLYGDDDEEDTLQRNTNVDEPKLIGHHPASKEKVLLKSGPYGFYVQLGEDRTGYLPKRASVSHIKDVDSITLEDALELLRYPVNLGNHPKDGQPIMLRLARAGFSVRHRRTIASVPKNMKPNDVTLEKALEFL 588
            ++   L+K     LF     +++ CP C  G L  K+ +FGA  F+ C+ +P C +    + G+D+ ED    +T +++ K++G      E + LK GPYG Y+QLGE      PKR  V        ITLE AL+LL  P+ +G H   G+ I++  ++ G  +++     SVPK     +++L  A++ +
Sbjct:  577 EIINYLQKALDYHLFGE-DKESKVCPSCKTGQLSLKLGKFGA--FLACSNYPECTFKKSIVSGNDNNEDEGDPSTILNDNKILGTDQDGVE-IYLKKGPYGPYIQLGEQCGKVKPKRTPVPANLKQSEITLEIALKLLNLPLKIGIHKDSGEEIIIGYSKFGPYIKYMCKFISVPKKYDFLNLSLNDAMKLI 764          
BLAST of CX290828 vs. ExPASy Swiss-Prot
Match: TOP1_RICBR (DNA topoisomerase 1 OS=Rickettsia bellii (strain RML369-C) GN=topA PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 2.804e-20
Identity = 54/175 (30.86%), Postives = 97/175 (55.43%), Query Frame = 1
Query:   76 NRSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNYIAKTLYGDDDEEDTLQRNTNVDEPKLIGHHPASKEKVLLKSGPYGFYVQLGEDRTGYL-PKRASVSHIKDVDSITLEDALELLRYPVNLGNHPKDGQPIMLRLARAGFSVRHRRTIASVPKNMKPNDVTLEKALEFLSGK 597
            ++ CP C  G L  K+ +FGA  F+ C+ +P CN+    + G+D+ E   +    V+E K++G      E + LK GPYG Y+Q GE     + PKR+ +    + + ITL+ AL+LL  P+ +GNH + G+ +++   + G  +++     S+PK     +++L+ A++ +  K
Sbjct:  597 SKVCPSCKTGELSLKLGKFGA--FLACSNYPECNFRKSIVSGNDNNEADGEAKDIVNENKVLGKDKEGIE-IYLKKGPYGPYIQYGEQVDSKIKPKRSPLPAGLNQNDITLDMALKLLSLPLKIGNHKESGEEVLVGYGKFGPYIKYMGKFISIPKKYDFLNLSLDDAMKLIEEK 768          
BLAST of CX290828 vs. ExPASy Swiss-Prot
Match: TOP1_RICCN (DNA topoisomerase 1 OS=Rickettsia conorii GN=topA PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 2.010e-18
Identity = 52/172 (30.23%), Postives = 92/172 (53.49%), Query Frame = 1
Query:   73 KNRSCPVCGEGTLIFKVSRFGAGYFIGCNQHPRCNYIAKTLYGDDDEEDTLQRNTNVDEPKLIGHHPASKEKVLLKSGPYGFYVQLGEDRTGYLPKRASVSHIKDVDSITLEDALELLRYPVNLGNHPKDGQPIMLRLARAGFSVRHRRTIASVPKNMKPNDVTLEKALEFL 588
            +++ CP C  G L  K+ +FGA  F+ C+ +P C +    + G+D+ E+  +     +E K++G      E + LK GPYG Y+QLG+      PKR+ V    + + ITL+ AL+LL  P+ +G H    + IM+   + G  +++     SV K     +++L+ A++ +
Sbjct:  596 ESKICPSCNTGELSLKLGKFGA--FLACSNYPECTFRKSIVSGNDNNENEGEPAAMPNENKVLGTDKDGVE-IYLKKGPYGPYIQLGKQEGKVKPKRSPVPASLNQNDITLDIALKLLSLPLKIGIHKDSDEEIMIGYGKFGPYIKYMGQFISVQKKYDFLNLSLDDAMKLI 764          
BLAST of CX290828 vs. ExPASy Swiss-Prot
Match: TOP1_SYNY3 (DNA topoisomerase 1 OS=Synechocystis sp. (strain PCC 6803) GN=topA PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.923e-11
Identity = 45/120 (37.50%), Postives = 64/120 (53.33%), Query Frame = 1
Query:  250 PKLIGHHPASKEKVLLKSGPYGFYVQLGE-DRTGYLPKRASVSHIKDVDSITLEDALELLRYPVNLGNHPKDGQPIMLRLARAG-FSVRHRRTIASVPKNMKPND----VTLEKALEFLS 591
            P  +G HP + E + +  G YG YVQLGE       PKR S+      + +TLE A+ LL  P NLG HP+ G+ I   L R G + V  +       +++K +D    +TLE+ALE L+
Sbjct:  657 PDKVGIHPETGEPIFILIGAYGPYVQLGEATEENKKPKRTSLPKGVKPEDVTLEMAVGLLALPRNLGEHPESGKNIKASLGRFGPYVVHDQGKDGKDYRSLKGDDDVLTITLERALELLA 776          
The following BLAST results are available for this feature:
BLAST of CX290828 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
TOP1_RICFE4.326e-2130.73DNA topoisomerase 1 OS=Rickettsia felis GN=topA PE... [more]
TOP1_RICTY5.650e-2131.25DNA topoisomerase 1 OS=Rickettsia typhi GN=topA PE... [more]
TOP1_RICPR5.650e-2131.25DNA topoisomerase 1 OS=Rickettsia prowazekii GN=to... [more]
TOP1_RICBR2.804e-2030.86DNA topoisomerase 1 OS=Rickettsia bellii (strain R... [more]
TOP1_RICCN2.010e-1830.23DNA topoisomerase 1 OS=Rickettsia conorii GN=topA ... [more]
TOP1_SYNY36.923e-1137.50DNA topoisomerase 1 OS=Synechocystis sp. (strain P... [more]
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Properties
Property NameValue
Genbank descriptionC02027F04SK IF1 Citrus clementina cDNA clone C02027F04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX290828 ID=CX290828; Name=CX290828; organism=Citrus clementina; type=EST; length=729bp
ATTCGGCCGAGGCAGGTGGAGAAGATGTTGGAGAAAACATTTGGGGATTC
CTTGTTTGCTTCTCTCCCCAATAAAAACAGGAGTTGTCCAGTCTGTGGGG
AAGGCACTTTGATTTTCAAAGTAAGTAGGTTTGGTGCAGGCTATTTCATA
GGATGCAATCAACATCCAAGATGCAATTATATTGCTAAGACGTTATATGG
TGACGATGATGAAGAAGATACTCTTCAAAGGAACACTAATGTGGACGAGC
CAAAATTGATTGGTCATCATCCGGCTTCAAAAGAAAAGGTTCTTCTTAAA
AGTGGTCCTTATGGATTCTATGTACAGCTTGGTGAAGACAGGACAGGATA
TTTGCCTAAAAGGGCTTCTGTTTCCCATATTAAGGATGTGGACTCAATTA
CTCTCGAAGATGCTTTGGAGTTGCTGCGTTACCCTGTGAATCTGGGGAAC
CACCCAAAGGATGGTCAACCCATAATGTTAAGGCTTGCGAGGGCTGGATT
TTCTGTTCGACATCGGCGCACTATTGCCTCTGTTCCCAAGAACATGAAGC
CGAATGACGTCACTCTTGAGAAGGCGTTGGAGTTTCTGTCGGGTAAAGAT
GTAAGACGGTGTGGCCGACCTAAGGGCAAACCAAAGCGTGAGGAAGCTTT
GGAGGCCATGTAGAGTTAGTAAAGAGGAGAGAGCATACCTTTTCTGATGA
TTTTTGCTTATTATAGATGAACAATTGTT
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