CX290829

Overview
NameCX290829
Unique NameCX290829
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length372
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig95 contig Ccv1_Contig95:1..372. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX290829 vs. ExPASy Swiss-Prot
Match: CNGC1_ARATH (Cyclic nucleotide-gated ion channel 1 OS=Arabidopsis thaliana GN=CNGC1 PE=1 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 2.226e-15
Identity = 37/112 (33.04%), Postives = 68/112 (60.71%), Query Frame = 2
Query:    2 LQQKVKKYKSYIRRKTDYIDVQXXXXXXXXXXXXXXXXXXCWNLLKKVQEFRKLNEVTLDALCDCVKPTFFTEHTHLIREGDPIDEMIFVVQGKLRTYTFKDIQSGSTSSDH 337
            L++++++Y+ Y  ++T  +D +                  C  LL +V  F K++E  LDALCD ++P  +TE ++++REGDP+DEM+F+++GKL T T    ++G  +S++
Sbjct:  437 LRKRIRRYEQYKWQETRGVDEENLLSNLPKDLRRDIKRHLCLALLMRVPMFEKMDEQLLDALCDRLQPVLYTEESYIVREGDPVDEMLFIMRGKLLTITTNGGRTGFLNSEY 548          
BLAST of CX290829 vs. ExPASy Swiss-Prot
Match: CNGC7_ARATH (Putative cyclic nucleotide-gated ion channel 7 OS=Arabidopsis thaliana GN=CNGC7 PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 4.197e-14
Identity = 35/106 (33.02%), Postives = 64/106 (60.38%), Query Frame = 2
Query:    2 LQQKVKKYKSYIRRKTDYIDVQXXXXXXXXXXXXXXXXXXCWNLLKKVQEFRKLNEVTLDALCDCVKPTFFTEHTHLIREGDPIDEMIFVVQGKLRTYTFKDIQSG 319
            L+++V++Y  Y   +T  +D +                  C NL+++V  F  ++E  LDA+C+ +KP+ FTE T+++REGDP++EM+F+++G+L + T    +SG
Sbjct:  453 LRERVRRYDQYKWLETRGVDEENIVQSLPKDLRRDIKRHLCLNLVRRVPLFANMDERLLDAICERLKPSLFTESTYIVREGDPVNEMMFIIRGRLESVTTDGGRSG 558          
BLAST of CX290829 vs. ExPASy Swiss-Prot
Match: CNGC8_ARATH (Putative cyclic nucleotide-gated ion channel 8 OS=Arabidopsis thaliana GN=CNGC8 PE=2 SV=2)

HSP 1 Score: 75.8702 bits (185), Expect = 7.159e-14
Identity = 34/106 (32.08%), Postives = 64/106 (60.38%), Query Frame = 2
Query:    2 LQQKVKKYKSYIRRKTDYIDVQXXXXXXXXXXXXXXXXXXCWNLLKKVQEFRKLNEVTLDALCDCVKPTFFTEHTHLIREGDPIDEMIFVVQGKLRTYTFKDIQSG 319
            L+++V++Y  Y   +T  +D +                  C NL+++V  F  ++E  LDA+C+ +KP+ +TE T+++REGDP++EM+F+++G+L + T    +SG
Sbjct:  459 LRERVRRYDQYKWLETRGVDEENIVQSLPKDLRRDIKRHLCLNLVRRVPLFANMDERLLDAICERLKPSLYTESTYIVREGDPVNEMLFIIRGRLESVTTDGGRSG 564          
BLAST of CX290829 vs. ExPASy Swiss-Prot
Match: CNG13_ARATH (Putative cyclic nucleotide-gated ion channel 13 OS=Arabidopsis thaliana GN=CNGC13 PE=2 SV=2)

HSP 1 Score: 75.485 bits (184), Expect = 9.350e-14
Identity = 36/106 (33.96%), Postives = 65/106 (61.32%), Query Frame = 2
Query:    2 LQQKVKKYKSYIRRKTDYIDVQXXXXXXXXXXXXXXXXXXCWNLLKKVQEFRKLNEVTLDALCDCVKPTFFTEHTHLIREGDPIDEMIFVVQGKLRTYTFKDIQSG 319
            L++++++Y+ Y  ++T  ++ +                  C +LLKKV  F  ++E  LDA+CD +KP  +TE+++ IREGDP++EM+FV++GKL + T    ++G
Sbjct:  425 LRKRIRRYEQYKWQETRGVEEENLLRNLPKDLRRDIKRHFCLDLLKKVPLFEIMDEQLLDAVCDKLKPVLYTENSYAIREGDPVEEMLFVMRGKLMSATTNGGRTG 530          
BLAST of CX290829 vs. ExPASy Swiss-Prot
Match: CNGC5_ARATH (Probable cyclic nucleotide-gated ion channel 5 OS=Arabidopsis thaliana GN=CNGC5 PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 2.083e-13
Identity = 35/106 (33.02%), Postives = 62/106 (58.49%), Query Frame = 2
Query:    2 LQQKVKKYKSYIRRKTDYIDVQXXXXXXXXXXXXXXXXXXCWNLLKKVQEFRKLNEVTLDALCDCVKPTFFTEHTHLIREGDPIDEMIFVVQGKLRTYTFKDIQSG 319
            L+++V++Y  Y   +T  +D +                  C  L+++V  F+ +++  LDA+C  +KP  FTE T+L+REGDP+DEM+F+++G+L + T    +SG
Sbjct:  449 LRERVRRYDQYKWLETRGVDEEYLVQNLPKDLRRDIKRHLCLALVRRVPLFKSMDDKLLDAICMRLKPCLFTESTYLVREGDPVDEMLFIIRGRLESVTTDGGRSG 554          
BLAST of CX290829 vs. ExPASy Swiss-Prot
Match: CNG15_ARATH (Putative cyclic nucleotide-gated ion channel 15 OS=Arabidopsis thaliana GN=CNGC15 PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 4.641e-13
Identity = 37/110 (33.64%), Postives = 63/110 (57.27%), Query Frame = 2
Query:    2 LQQKVKKYKSYIRRKTDYIDVQXXXXXXXXXXXXXXXXXXCWNLLKKVQEFRKLNEVTLDALCDCVKPTFFTEHTHLIREGDPIDEMIFVVQGKLRTYTFKDIQSGSTSS 331
            L+Q V+KY  Y    T  +D +                  C++L+++V  F +++E  LDA+C+ +KP   TE T L+REGDP++EM+F+++G L +YT    ++G  +S
Sbjct:  422 LRQAVRKYDQYKWLATRGVDEEALLISLPLDLRRDIKRHLCFDLVRRVPLFDQMDERMLDAICERLKPALCTEGTFLVREGDPVNEMLFIIRGHLDSYTTNGGRTGFFNS 531          
BLAST of CX290829 vs. ExPASy Swiss-Prot
Match: CNG10_ARATH (Probable cyclic nucleotide-gated ion channel 10 OS=Arabidopsis thaliana GN=CNGC10 PE=2 SV=2)

HSP 1 Score: 73.1738 bits (178), Expect = 4.641e-13
Identity = 35/106 (33.02%), Postives = 65/106 (61.32%), Query Frame = 2
Query:    2 LQQKVKKYKSYIRRKTDYIDVQXXXXXXXXXXXXXXXXXXCWNLLKKVQEFRKLNEVTLDALCDCVKPTFFTEHTHLIREGDPIDEMIFVVQGKLRTYTFKDIQSG 319
            L++++++Y+ Y  ++T  ++ +                  C +LLKKV  F  ++E  LDA+CD ++P  +TE++++IREGDP+ EM+FV++G+L + T    +SG
Sbjct:  424 LRKRIRRYEQYRWQETRGVEEETLLRNLPKDLRRDIKRHLCLDLLKKVPLFEIMDEQLLDAVCDRLRPVLYTENSYVIREGDPVGEMLFVMRGRLVSATTNGGRSG 529          
BLAST of CX290829 vs. ExPASy Swiss-Prot
Match: CNGC6_ARATH (Probable cyclic nucleotide-gated ion channel 6 OS=Arabidopsis thaliana GN=CNGC6 PE=1 SV=2)

HSP 1 Score: 72.7886 bits (177), Expect = 6.061e-13
Identity = 34/106 (32.08%), Postives = 62/106 (58.49%), Query Frame = 2
Query:    2 LQQKVKKYKSYIRRKTDYIDVQXXXXXXXXXXXXXXXXXXCWNLLKKVQEFRKLNEVTLDALCDCVKPTFFTEHTHLIREGDPIDEMIFVVQGKLRTYTFKDIQSG 319
            L+++V++Y  Y   +T  +D +                  C  L+++V  F  ++E  LDA+C+ +KP  FTE ++L+REGDP++EM+F+++G+L + T    +SG
Sbjct:  465 LRERVRRYDQYKWLETRGVDEENLVQNLPKDLRRDIKRHLCLALVRRVPLFENMDERLLDAICERLKPCLFTEKSYLVREGDPVNEMLFIIRGRLESVTTDGGRSG 570          
BLAST of CX290829 vs. ExPASy Swiss-Prot
Match: CNGC9_ARATH (Putative cyclic nucleotide-gated ion channel 9 OS=Arabidopsis thaliana GN=CNGC9 PE=1 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 1.350e-12
Identity = 33/106 (31.13%), Postives = 62/106 (58.49%), Query Frame = 2
Query:    2 LQQKVKKYKSYIRRKTDYIDVQXXXXXXXXXXXXXXXXXXCWNLLKKVQEFRKLNEVTLDALCDCVKPTFFTEHTHLIREGDPIDEMIFVVQGKLRTYTFKDIQSG 319
            L+++V++Y  Y   +T  +D +                  C  L+++V  F  ++E  LDA+C+ +KP  +TE ++L+REGDP++EM+F+++G+L + T    +SG
Sbjct:  464 LRERVRRYDQYKWLETRGVDEENLVQNLPKDLRRDIKRHLCLALVRRVPLFENMDERLLDAICERLKPCLYTESSYLVREGDPVNEMLFIIRGRLESVTTDGGRSG 569          
The following BLAST results are available for this feature:
BLAST of CX290829 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 9
Match NameE-valueIdentityDescription
CNGC1_ARATH2.226e-1533.04Cyclic nucleotide-gated ion channel 1 OS=Arabidops... [more]
CNGC7_ARATH4.197e-1433.02Putative cyclic nucleotide-gated ion channel 7 OS=... [more]
CNGC8_ARATH7.159e-1432.08Putative cyclic nucleotide-gated ion channel 8 OS=... [more]
CNG13_ARATH9.350e-1433.96Putative cyclic nucleotide-gated ion channel 13 OS... [more]
CNGC5_ARATH2.083e-1333.02Probable cyclic nucleotide-gated ion channel 5 OS=... [more]
CNG15_ARATH4.641e-1333.64Putative cyclic nucleotide-gated ion channel 15 OS... [more]
CNG10_ARATH4.641e-1333.02Probable cyclic nucleotide-gated ion channel 10 OS... [more]
CNGC6_ARATH6.061e-1332.08Probable cyclic nucleotide-gated ion channel 6 OS=... [more]
CNGC9_ARATH1.350e-1231.13Putative cyclic nucleotide-gated ion channel 9 OS=... [more]
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Properties
Property NameValue
Genbank descriptionC02027F05SK IF1 Citrus clementina cDNA clone C02027F05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX290829 ID=CX290829; Name=CX290829; organism=Citrus clementina; type=EST; length=372bp
TCTCCAGCAAAAGGTGAAGAAATATAAGTCGTACATACGGCGAAAAACTG
ATTACATTGATGTACAAAATCTACTCAATAATCTTCCCAATGAACTCAGA
AGAGAACTAAAGCGCGAACTTTGCTGGAATCTGCTAAAGAAAGTACAAGA
GTTCAGGAAGCTAAATGAGGTAACATTGGATGCTCTATGCGATTGCGTAA
AACCAACTTTCTTCACCGAGCACACTCACTTAATTCGTGAAGGAGACCCA
ATTGACGAGATGATCTTTGTAGTGCAAGGCAAACTGCGCACCTACACCTT
TAAGGATATACAAAGTGGCTCAACAAGCTCTGATCATAAAAGATATGATG
GCAAAAACACAAGGAAAGAAGA
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