CX290829
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CX290829 vs. ExPASy Swiss-Prot
Match: CNGC1_ARATH (Cyclic nucleotide-gated ion channel 1 OS=Arabidopsis thaliana GN=CNGC1 PE=1 SV=1) HSP 1 Score: 80.8777 bits (198), Expect = 2.226e-15 Identity = 37/112 (33.04%), Postives = 68/112 (60.71%), Query Frame = 2 Query: 2 LQQKVKKYKSYIRRKTDYIDVQXXXXXXXXXXXXXXXXXXCWNLLKKVQEFRKLNEVTLDALCDCVKPTFFTEHTHLIREGDPIDEMIFVVQGKLRTYTFKDIQSGSTSSDH 337 L++++++Y+ Y ++T +D + C LL +V F K++E LDALCD ++P +TE ++++REGDP+DEM+F+++GKL T T ++G +S++ Sbjct: 437 LRKRIRRYEQYKWQETRGVDEENLLSNLPKDLRRDIKRHLCLALLMRVPMFEKMDEQLLDALCDRLQPVLYTEESYIVREGDPVDEMLFIMRGKLLTITTNGGRTGFLNSEY 548
BLAST of CX290829 vs. ExPASy Swiss-Prot
Match: CNGC7_ARATH (Putative cyclic nucleotide-gated ion channel 7 OS=Arabidopsis thaliana GN=CNGC7 PE=2 SV=1) HSP 1 Score: 76.6406 bits (187), Expect = 4.197e-14 Identity = 35/106 (33.02%), Postives = 64/106 (60.38%), Query Frame = 2 Query: 2 LQQKVKKYKSYIRRKTDYIDVQXXXXXXXXXXXXXXXXXXCWNLLKKVQEFRKLNEVTLDALCDCVKPTFFTEHTHLIREGDPIDEMIFVVQGKLRTYTFKDIQSG 319 L+++V++Y Y +T +D + C NL+++V F ++E LDA+C+ +KP+ FTE T+++REGDP++EM+F+++G+L + T +SG Sbjct: 453 LRERVRRYDQYKWLETRGVDEENIVQSLPKDLRRDIKRHLCLNLVRRVPLFANMDERLLDAICERLKPSLFTESTYIVREGDPVNEMMFIIRGRLESVTTDGGRSG 558
BLAST of CX290829 vs. ExPASy Swiss-Prot
Match: CNGC8_ARATH (Putative cyclic nucleotide-gated ion channel 8 OS=Arabidopsis thaliana GN=CNGC8 PE=2 SV=2) HSP 1 Score: 75.8702 bits (185), Expect = 7.159e-14 Identity = 34/106 (32.08%), Postives = 64/106 (60.38%), Query Frame = 2 Query: 2 LQQKVKKYKSYIRRKTDYIDVQXXXXXXXXXXXXXXXXXXCWNLLKKVQEFRKLNEVTLDALCDCVKPTFFTEHTHLIREGDPIDEMIFVVQGKLRTYTFKDIQSG 319 L+++V++Y Y +T +D + C NL+++V F ++E LDA+C+ +KP+ +TE T+++REGDP++EM+F+++G+L + T +SG Sbjct: 459 LRERVRRYDQYKWLETRGVDEENIVQSLPKDLRRDIKRHLCLNLVRRVPLFANMDERLLDAICERLKPSLYTESTYIVREGDPVNEMLFIIRGRLESVTTDGGRSG 564
BLAST of CX290829 vs. ExPASy Swiss-Prot
Match: CNG13_ARATH (Putative cyclic nucleotide-gated ion channel 13 OS=Arabidopsis thaliana GN=CNGC13 PE=2 SV=2) HSP 1 Score: 75.485 bits (184), Expect = 9.350e-14 Identity = 36/106 (33.96%), Postives = 65/106 (61.32%), Query Frame = 2 Query: 2 LQQKVKKYKSYIRRKTDYIDVQXXXXXXXXXXXXXXXXXXCWNLLKKVQEFRKLNEVTLDALCDCVKPTFFTEHTHLIREGDPIDEMIFVVQGKLRTYTFKDIQSG 319 L++++++Y+ Y ++T ++ + C +LLKKV F ++E LDA+CD +KP +TE+++ IREGDP++EM+FV++GKL + T ++G Sbjct: 425 LRKRIRRYEQYKWQETRGVEEENLLRNLPKDLRRDIKRHFCLDLLKKVPLFEIMDEQLLDAVCDKLKPVLYTENSYAIREGDPVEEMLFVMRGKLMSATTNGGRTG 530
BLAST of CX290829 vs. ExPASy Swiss-Prot
Match: CNGC5_ARATH (Probable cyclic nucleotide-gated ion channel 5 OS=Arabidopsis thaliana GN=CNGC5 PE=2 SV=1) HSP 1 Score: 74.3294 bits (181), Expect = 2.083e-13 Identity = 35/106 (33.02%), Postives = 62/106 (58.49%), Query Frame = 2 Query: 2 LQQKVKKYKSYIRRKTDYIDVQXXXXXXXXXXXXXXXXXXCWNLLKKVQEFRKLNEVTLDALCDCVKPTFFTEHTHLIREGDPIDEMIFVVQGKLRTYTFKDIQSG 319 L+++V++Y Y +T +D + C L+++V F+ +++ LDA+C +KP FTE T+L+REGDP+DEM+F+++G+L + T +SG Sbjct: 449 LRERVRRYDQYKWLETRGVDEEYLVQNLPKDLRRDIKRHLCLALVRRVPLFKSMDDKLLDAICMRLKPCLFTESTYLVREGDPVDEMLFIIRGRLESVTTDGGRSG 554
BLAST of CX290829 vs. ExPASy Swiss-Prot
Match: CNG15_ARATH (Putative cyclic nucleotide-gated ion channel 15 OS=Arabidopsis thaliana GN=CNGC15 PE=2 SV=1) HSP 1 Score: 73.1738 bits (178), Expect = 4.641e-13 Identity = 37/110 (33.64%), Postives = 63/110 (57.27%), Query Frame = 2 Query: 2 LQQKVKKYKSYIRRKTDYIDVQXXXXXXXXXXXXXXXXXXCWNLLKKVQEFRKLNEVTLDALCDCVKPTFFTEHTHLIREGDPIDEMIFVVQGKLRTYTFKDIQSGSTSS 331 L+Q V+KY Y T +D + C++L+++V F +++E LDA+C+ +KP TE T L+REGDP++EM+F+++G L +YT ++G +S Sbjct: 422 LRQAVRKYDQYKWLATRGVDEEALLISLPLDLRRDIKRHLCFDLVRRVPLFDQMDERMLDAICERLKPALCTEGTFLVREGDPVNEMLFIIRGHLDSYTTNGGRTGFFNS 531
BLAST of CX290829 vs. ExPASy Swiss-Prot
Match: CNG10_ARATH (Probable cyclic nucleotide-gated ion channel 10 OS=Arabidopsis thaliana GN=CNGC10 PE=2 SV=2) HSP 1 Score: 73.1738 bits (178), Expect = 4.641e-13 Identity = 35/106 (33.02%), Postives = 65/106 (61.32%), Query Frame = 2 Query: 2 LQQKVKKYKSYIRRKTDYIDVQXXXXXXXXXXXXXXXXXXCWNLLKKVQEFRKLNEVTLDALCDCVKPTFFTEHTHLIREGDPIDEMIFVVQGKLRTYTFKDIQSG 319 L++++++Y+ Y ++T ++ + C +LLKKV F ++E LDA+CD ++P +TE++++IREGDP+ EM+FV++G+L + T +SG Sbjct: 424 LRKRIRRYEQYRWQETRGVEEETLLRNLPKDLRRDIKRHLCLDLLKKVPLFEIMDEQLLDAVCDRLRPVLYTENSYVIREGDPVGEMLFVMRGRLVSATTNGGRSG 529
BLAST of CX290829 vs. ExPASy Swiss-Prot
Match: CNGC6_ARATH (Probable cyclic nucleotide-gated ion channel 6 OS=Arabidopsis thaliana GN=CNGC6 PE=1 SV=2) HSP 1 Score: 72.7886 bits (177), Expect = 6.061e-13 Identity = 34/106 (32.08%), Postives = 62/106 (58.49%), Query Frame = 2 Query: 2 LQQKVKKYKSYIRRKTDYIDVQXXXXXXXXXXXXXXXXXXCWNLLKKVQEFRKLNEVTLDALCDCVKPTFFTEHTHLIREGDPIDEMIFVVQGKLRTYTFKDIQSG 319 L+++V++Y Y +T +D + C L+++V F ++E LDA+C+ +KP FTE ++L+REGDP++EM+F+++G+L + T +SG Sbjct: 465 LRERVRRYDQYKWLETRGVDEENLVQNLPKDLRRDIKRHLCLALVRRVPLFENMDERLLDAICERLKPCLFTEKSYLVREGDPVNEMLFIIRGRLESVTTDGGRSG 570
BLAST of CX290829 vs. ExPASy Swiss-Prot
Match: CNGC9_ARATH (Putative cyclic nucleotide-gated ion channel 9 OS=Arabidopsis thaliana GN=CNGC9 PE=1 SV=1) HSP 1 Score: 71.633 bits (174), Expect = 1.350e-12 Identity = 33/106 (31.13%), Postives = 62/106 (58.49%), Query Frame = 2 Query: 2 LQQKVKKYKSYIRRKTDYIDVQXXXXXXXXXXXXXXXXXXCWNLLKKVQEFRKLNEVTLDALCDCVKPTFFTEHTHLIREGDPIDEMIFVVQGKLRTYTFKDIQSG 319 L+++V++Y Y +T +D + C L+++V F ++E LDA+C+ +KP +TE ++L+REGDP++EM+F+++G+L + T +SG Sbjct: 464 LRERVRRYDQYKWLETRGVDEENLVQNLPKDLRRDIKRHLCLALVRRVPLFENMDERLLDAICERLKPCLYTESSYLVREGDPVNEMLFIIRGRLESVTTDGGRSG 569 The following BLAST results are available for this feature:
BLAST of CX290829 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 9
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >CX290829 ID=CX290829; Name=CX290829; organism=Citrus clementina; type=EST; length=372bpback to top |