CX290834

Overview
NameCX290834
Unique NameCX290834
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length713
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig325 contig Ccv1_Contig325:1..716. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX290834 vs. ExPASy Swiss-Prot
Match: TAF1A_ARATH (Transcription initiation factor TFIID subunit 1-A OS=Arabidopsis thaliana GN=HAF1 PE=2 SV=1)

HSP 1 Score: 222.246 bits (565), Expect = 2.094e-57
Identity = 103/160 (64.38%), Postives = 129/160 (80.62%), Query Frame = 1
Query:   19 QDYRAKRNDRRMPERDRGAKRKPGAELGKHSADYGPPTKRRRGGEVGLSNILERIVETLRENTELSYLFLKPVAKKEAPDYLDIIERPMDLSTIRGKVRRMEYKDREDFRHDVWQIAFNAHKYNDGRHPAIPPLADQLLELCDYLIDEYHESLSEAEAGI 498
            +DY  ++NDRR+ ER R  + +  ++  +  A+Y P  KRR+ GEVGL+NILERIV+TLR   E+S LFLKPV+KKEAPDYLDI+E PMDLSTIR KVR++EY++RE FRHDVWQI +NAH YNDGR+P IPPLADQLLE+CDYL+D+Y + L EAE GI
Sbjct: 1756 EDYPPRKNDRRLSERGRNVRSRYVSDFERDGAEYAPQPKRRKKGEVGLANILERIVDTLRLKEEVSRLFLKPVSKKEAPDYLDIVENPMDLSTIRDKVRKIEYRNREQFRHDVWQIKYNAHLYNDGRNPGIPPLADQLLEICDYLLDDYEDQLKEAEKGI 1915          
BLAST of CX290834 vs. ExPASy Swiss-Prot
Match: TAF1_ORYSJ (Transcription initiation factor TFIID subunit 1 OS=Oryza sativa subsp. japonica GN=TAF1 PE=2 SV=1)

HSP 1 Score: 201.83 bits (512), Expect = 2.929e-51
Identity = 104/160 (65.00%), Postives = 121/160 (75.62%), Query Frame = 1
Query:   22 DYRAKRNDRRMPERDRGAKRKPGAELGKHSADYGPPTKRRRGGEVGLSNILERIVETLRENTELSYLFLKPVAKKEAPDYLDIIERPMDLSTIRGKVRRMEYKDREDFRHDVWQIAFNAHKYNDGRHPAIPPLADQLLELCDYLIDEYHESLSEAEAGIQ 501
            D R  +NDRR+PER R AKR+  A++     +Y PP KR RGGEV LSNILE+IV+ LR     S+LF KPV KKEAPDY DIIERPMDL TIR KVR+MEYK+REDFRHDV QIA NAH YN  RHP IPPLAD+LLELCDYL++E  + L +AE  I+
Sbjct: 1655 DPRPYKNDRRVPERGRAAKRRTPADM----TEYTPPAKRHRGGEVELSNILEKIVDHLR-TMSCSFLFRKPVTKKEAPDYFDIIERPMDLGTIRDKVRKMEYKNREDFRHDVAQIALNAHTYNLNRHPHIPPLADELLELCDYLLEESADVLDDAEYAIE 1809          
BLAST of CX290834 vs. ExPASy Swiss-Prot
Match: TAF1B_ARATH (Transcription initiation factor TFIID subunit 1-B OS=Arabidopsis thaliana GN=HAF2 PE=2 SV=1)

HSP 1 Score: 189.119 bits (479), Expect = 1.965e-47
Identity = 93/161 (57.76%), Postives = 119/161 (73.91%), Query Frame = 1
Query:   19 QDYRAKRNDRRMPERDRGAKRKPGAELGKHSADYGPPTKRRRGGEVGLSNILERIVETLR-ENTELSYLFLKPVAKKEAPDYLDIIERPMDLSTIRGKVRRMEYKDREDFRHDVWQIAFNAHKYNDGRHPAIPPLADQLLELCDYLIDEYHESLSEAEAGI 498
            ++Y  +RND    E  +       ++  ++  +Y P  KRR+ G+VGL+NILE IV+TLR +   +SYLFLKPV KKEAP+YL+I++ PMDLSTIR KVRRMEY+DR+ FRHDVWQI FNAH YNDGR+ +IPPLAD+LL  CD L+DEY + L EAE GI
Sbjct: 1618 ENYPPRRNDGISSESGQNINSLCVSDFERNRTEYAPQPKRRKKGQVGLANILESIVDTLRVKEVNVSYLFLKPVTKKEAPNYLEIVKCPMDLSTIRDKVRRMEYRDRQQFRHDVWQIKFNAHLYNDGRNLSIPPLADELLVKCDRLLDEYRDELKEAEKGI 1778          
BLAST of CX290834 vs. ExPASy Swiss-Prot
Match: TAF1_MOUSE (Transcription initiation factor TFIID subunit 1 OS=Mus musculus GN=Taf1 PE=2 SV=2)

HSP 1 Score: 77.411 bits (189), Expect = 8.331e-14
Identity = 46/122 (37.70%), Postives = 67/122 (54.92%), Query Frame = 1
Query:  133 KRRRGGEVGLSNILERIVETLRENTELSYLFLKPVAKKEAPDYLDIIERPMDLSTIRGKVRRMEYKDREDFRHDVWQIAFNAHKYNDGRHPAIPPLADQLLELCDYLIDEYHESLSEAEAGI 498
            +RR    V LS+ILE I+  +R+    +Y F  PV  K   DY  II RPMDL T+R  VR+  Y  RE+FR  +  I  N+  YN  +H ++  ++  +L+LCD  + E  + L+  E  I
Sbjct: 1397 RRRTDPMVTLSSILESIINDMRDLPN-TYPFHTPVNAKVVKDYYKIITRPMDLQTLRENVRKRLYPSREEFREHLELIVKNSATYNGPKH-SLTQISQSMLDLCDEKLKEKEDKLARLEKAI 1516          

HSP 2 Score: 70.0922 bits (170), Expect = 1.330e-11
Identity = 43/116 (37.07%), Postives = 59/116 (50.86%), Query Frame = 1
Query:  151 EVGLSNILERIVETLRENTELSYLFLKPVAKKEAPDYLDIIERPMDLSTIRGKVRRMEYKDREDFRHDVWQIAFNAHKYNDGRHPAIPPLADQLLELCDYLIDEYHESLSEAEAGI 498
            +V  S IL+ IV         S+ F  PV KK  PDY  +I  PMDL TIR  + + +Y+ RE F  DV  I  N+ KYN G        A +++ +C   + EY E L++ E  I
Sbjct: 1525 QVAFSFILDNIVTQKMMAVPDSWPFHHPVNKKFVPDYYKVIVSPMDLETIRKNISKHKYQSRESFLDDVNLILANSVKYN-GPESQYTKTAQEIVNVCHQTLTEYDEHLTQLEKDI 1639          
BLAST of CX290834 vs. ExPASy Swiss-Prot
Match: TAF1_MESAU (Transcription initiation factor TFIID subunit 1 OS=Mesocricetus auratus GN=TAF1 PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 8.331e-14
Identity = 46/122 (37.70%), Postives = 67/122 (54.92%), Query Frame = 1
Query:  133 KRRRGGEVGLSNILERIVETLRENTELSYLFLKPVAKKEAPDYLDIIERPMDLSTIRGKVRRMEYKDREDFRHDVWQIAFNAHKYNDGRHPAIPPLADQLLELCDYLIDEYHESLSEAEAGI 498
            +RR    V LS+ILE I+  +R+    +Y F  PV  K   DY  II RPMDL T+R  VR+  Y  RE+FR  +  I  N+  YN  +H ++  ++  +L+LCD  + E  + L+  E  I
Sbjct: 1371 RRRTDPMVTLSSILESIINDMRDLPN-TYPFHTPVNAKVVKDYYKIITRPMDLQTLRENVRKRLYPSREEFREHLELIVKNSATYNGPKH-SLTQISQSMLDLCDEKLKEKEDKLARLEKAI 1490          

HSP 2 Score: 69.707 bits (169), Expect = 1.737e-11
Identity = 43/116 (37.07%), Postives = 59/116 (50.86%), Query Frame = 1
Query:  151 EVGLSNILERIVETLRENTELSYLFLKPVAKKEAPDYLDIIERPMDLSTIRGKVRRMEYKDREDFRHDVWQIAFNAHKYNDGRHPAIPPLADQLLELCDYLIDEYHESLSEAEAGI 498
            +V  S IL+ IV         S+ F  PV KK  PDY  +I  PMDL TIR  + + +Y+ RE F  DV  I  N+ KYN G        A +++ +C   + EY E L++ E  I
Sbjct: 1499 QVAFSFILDNIVTQKMMAVPDSWPFHHPVNKKFVPDYYKVIVSPMDLETIRKNISKHKYQSRESFLDDVNLILANSVKYN-GSESQYTKTAQEIVNVCYQTLTEYDEHLTQLEKDI 1613          
BLAST of CX290834 vs. ExPASy Swiss-Prot
Match: TAF1_HUMAN (Transcription initiation factor TFIID subunit 1 OS=Homo sapiens GN=TAF1 PE=1 SV=2)

HSP 1 Score: 77.411 bits (189), Expect = 8.331e-14
Identity = 46/122 (37.70%), Postives = 67/122 (54.92%), Query Frame = 1
Query:  133 KRRRGGEVGLSNILERIVETLRENTELSYLFLKPVAKKEAPDYLDIIERPMDLSTIRGKVRRMEYKDREDFRHDVWQIAFNAHKYNDGRHPAIPPLADQLLELCDYLIDEYHESLSEAEAGI 498
            +RR    V LS+ILE I+  +R+    +Y F  PV  K   DY  II RPMDL T+R  VR+  Y  RE+FR  +  I  N+  YN  +H ++  ++  +L+LCD  + E  + L+  E  I
Sbjct: 1376 RRRTDPMVTLSSILESIINDMRDLPN-TYPFHTPVNAKVVKDYYKIITRPMDLQTLRENVRKRLYPSREEFREHLELIVKNSATYNGPKH-SLTQISQSMLDLCDEKLKEKEDKLARLEKAI 1495          

HSP 2 Score: 69.707 bits (169), Expect = 1.737e-11
Identity = 43/116 (37.07%), Postives = 59/116 (50.86%), Query Frame = 1
Query:  151 EVGLSNILERIVETLRENTELSYLFLKPVAKKEAPDYLDIIERPMDLSTIRGKVRRMEYKDREDFRHDVWQIAFNAHKYNDGRHPAIPPLADQLLELCDYLIDEYHESLSEAEAGI 498
            +V  S IL+ IV         S+ F  PV KK  PDY  +I  PMDL TIR  + + +Y+ RE F  DV  I  N+ KYN G        A +++ +C   + EY E L++ E  I
Sbjct: 1504 QVAFSFILDNIVTQKMMAVPDSWPFHHPVNKKFVPDYYKVIVNPMDLETIRKNISKHKYQSRESFLDDVNLILANSVKYN-GPESQYTKTAQEIVNVCYQTLTEYDEHLTQLEKDI 1618          
BLAST of CX290834 vs. ExPASy Swiss-Prot
Match: TAF1_DICDI (Transcription initiation factor TFIID subunit 1 OS=Dictyostelium discoideum GN=taf1 PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.088e-13
Identity = 43/122 (35.25%), Postives = 66/122 (54.10%), Query Frame = 1
Query:  145 GGEVGLSNILERIVETLRENTELSYLFLKPVAKKEAPDYLDIIERPMDLSTIRGKVRRMEYKDREDFRHDVWQIAFNAHKYNDGRHPAIPPLADQLLELCDYLIDEYHESLSEAEAGIQSRN 510
            G +V LSNI ERI++ LR N E    F   V  K APDY  +I+ P+DL+T+R + R  EYK +  F   +  +  N  +YN+ R   + P+A++LL     L+  +   + + E  I+  N
Sbjct: 2112 GADVELSNIFERILDKLRTNDEF-IAFRHKVTPKLAPDYHKVIKNPIDLTTMRDRNRHWEYKSKNQFIDAIKLMVANCFEYNEKRFSHLLPIAEKLLTSTLQLLAPFDSQIGDLEKSIEQTN 2232          
BLAST of CX290834 vs. ExPASy Swiss-Prot
Match: TAF1L_HUMAN (Transcription initiation factor TFIID subunit 1-like OS=Homo sapiens GN=TAF1L PE=1 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 3.166e-13
Identity = 45/122 (36.89%), Postives = 67/122 (54.92%), Query Frame = 1
Query:  133 KRRRGGEVGLSNILERIVETLRENTELSYLFLKPVAKKEAPDYLDIIERPMDLSTIRGKVRRMEYKDREDFRHDVWQIAFNAHKYNDGRHPAIPPLADQLLELCDYLIDEYHESLSEAEAGI 498
            +RR    V LS+ILE I+  +R+    ++ F  PV  K   DY  II RPMDL T+R  VR+  Y  RE+FR  +  I  N+  YN  +H ++  ++  +L+LCD  + E  + L+  E  I
Sbjct: 1395 RRRTDPMVTLSSILESIINDMRDLPN-THPFHTPVNAKVVKDYYKIITRPMDLQTLRENVRKCLYPSREEFREHLELIVKNSATYNGPKH-SLTQISQSMLDLCDEKLKEKEDKLARLEKAI 1514          

HSP 2 Score: 68.5514 bits (166), Expect = 3.870e-11
Identity = 43/116 (37.07%), Postives = 59/116 (50.86%), Query Frame = 1
Query:  151 EVGLSNILERIVETLRENTELSYLFLKPVAKKEAPDYLDIIERPMDLSTIRGKVRRMEYKDREDFRHDVWQIAFNAHKYNDGRHPAIPPLADQLLELCDYLIDEYHESLSEAEAGI 498
            +V  S IL+ IV         S+ F  PV KK  PDY  +I  P+DL TIR  + + +Y+ RE F  DV  I  N+ KYN G        A +++ +C   I EY E L++ E  I
Sbjct: 1523 QVAFSFILDNIVTQKMMAVPDSWPFHHPVNKKFVPDYYKMIVNPVDLETIRKNISKHKYQSRESFLDDVNLILANSVKYN-GPESQYTKTAQEIVNICYQTITEYDEHLTQLEKDI 1637          
BLAST of CX290834 vs. ExPASy Swiss-Prot
Match: YB0B_SCHPO (Bromodomain-containing protein C25H2.11c OS=Schizosaccharomyces pombe GN=SPBC25H2.11c PE=1 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.571e-12
Identity = 48/138 (34.78%), Postives = 71/138 (51.45%), Query Frame = 1
Query:  139 RRGGEVGLSNILERIVETLRENTELSYLFLKPVAKKEAPDYLDIIERPMDLSTIRGKVRRMEYKDREDFRHDVWQIAFNAHKYNDGRHPAIPP------LADQLLELCDYLID-------EYHESLSEAEAGIQSRNT 513
            +R G+  L    E++V  LR  TE S  FL  V+K++APDY  +I+ PMDL TI   ++ + Y  +++F HD+  I  N   YN   HP  P       + D+ LEL + + D       +Y +SL EAE      +T
Sbjct:  296 QRIGQEELYEAAEKVVLELRSYTEHSLAFLTKVSKRDAPDYYTVIKEPMDLGTILRNLKNLHYNSKKEFVHDLMLIWSNCFLYNS--HPDHPLRVHAQFMKDKSLELINLIPDIVIQSRKDYDDSLIEAELESDEEST 431          
BLAST of CX290834 vs. ExPASy Swiss-Prot
Match: TAF1_DROME (Transcription initiation factor TFIID subunit 1 OS=Drosophila melanogaster GN=Taf1 PE=1 SV=3)

HSP 1 Score: 68.9366 bits (167), Expect = 2.963e-11
Identity = 46/122 (37.70%), Postives = 64/122 (52.46%), Query Frame = 1
Query:  133 KRRRGGEVGLSNILERIVETLRENTELSYLFLKPVAKKEAPDYLDIIERPMDLSTIRGKVRRMEYKDREDFRHDVWQIAFNAHKYNDGRHPAIPPLADQLLELCDYLIDEYHESLSEAEAGI 498
            +RR    V LS+ILE I   LR   ++S  FL PV+ K+ PDY  ++ +PMDL T+R  +R+  Y  RE F  D+ QI  N+  YN G   A    A ++   C  L+ E  + L   E  I
Sbjct: 1466 RRRTDPVVVLSSILEIIHNELRSMPDVSP-FLFPVSAKKVPDYYRVVTKPMDLQTMREYIRQRRYTSREMFLEDLKQIVDNSLIYN-GPQSAYTLAAQRMFSSCFELLAEREDKLMRLEKAI 1585          
The following BLAST results are available for this feature:
BLAST of CX290834 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 10
Match NameE-valueIdentityDescription
TAF1A_ARATH2.094e-5764.38Transcription initiation factor TFIID subunit 1-A ... [more]
TAF1_ORYSJ2.929e-5165.00Transcription initiation factor TFIID subunit 1 OS... [more]
TAF1B_ARATH1.965e-4757.76Transcription initiation factor TFIID subunit 1-B ... [more]
TAF1_MOUSE8.331e-1437.70Transcription initiation factor TFIID subunit 1 OS... [more]
TAF1_MESAU8.331e-1437.70Transcription initiation factor TFIID subunit 1 OS... [more]
TAF1_HUMAN8.331e-1437.70Transcription initiation factor TFIID subunit 1 OS... [more]
TAF1_DICDI1.088e-1335.25Transcription initiation factor TFIID subunit 1 OS... [more]
TAF1L_HUMAN3.166e-1336.89Transcription initiation factor TFIID subunit 1-li... [more]
YB0B_SCHPO1.571e-1234.78Bromodomain-containing protein C25H2.11c OS=Schizo... [more]
TAF1_DROME2.963e-1137.70Transcription initiation factor TFIID subunit 1 OS... [more]
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Properties
Property NameValue
Genbank descriptionC02027F10SK IF1 Citrus clementina cDNA clone C02027F10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX290834 ID=CX290834; Name=CX290834; organism=Citrus clementina; type=EST; length=713bp
AGATTCGGCCGAGGATTTCAGGACTACAGGGCTAAAAGAAATGATAGAAG
GATGCCAGAAAGAGATCGAGGTGCAAAGAGGAAACCTGGCGCAGAGTTGG
GAAAGCACAGTGCAGATTATGGACCTCCAACAAAGCGACGCAGAGGGGGA
GAGGTTGGTCTGTCGAACATATTAGAGCGCATTGTAGAGACCCTCCGAGA
AAATACTGAGTTGTCATATCTCTTCCTTAAACCAGTGGCCAAGAAAGAAG
CTCCTGATTACCTGGATATCATAGAGCGCCCCATGGATTTGTCCACAATC
AGGGGTAAGGTGAGGCGGATGGAGTACAAGGACCGAGAGGATTTTAGACA
CGATGTATGGCAAATTGCCTTTAATGCCCATAAGTACAACGATGGACGCC
ATCCTGCTATTCCCCCCCTTGCAGATCAGCTTCTGGAACTTTGTGACTAC
TTAATAGATGAGTATCATGAGAGCTTATCAGAGGCTGAAGCTGGTATTCA
ATCTCGGAATACCTAGGTAAACACTTTTGTCAGATTACCGTTGTTTATTA
GCCTGAGAATGCCAGAATACTAGATTATTTTTTTTCTTTAAAGGAAAAAG
AAAAGCGTATGTTGGAGTTTCCAGGTTCTGTAAATTCAGTGGGGATATGT
CCTTGGTAAAAAATTGGAAAGATTTGTTGGTTGTGTATCCCCTTTTTGTA
TCCATAATGTGAT
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