CX290834
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CX290834 vs. ExPASy Swiss-Prot
Match: TAF1A_ARATH (Transcription initiation factor TFIID subunit 1-A OS=Arabidopsis thaliana GN=HAF1 PE=2 SV=1) HSP 1 Score: 222.246 bits (565), Expect = 2.094e-57 Identity = 103/160 (64.38%), Postives = 129/160 (80.62%), Query Frame = 1 Query: 19 QDYRAKRNDRRMPERDRGAKRKPGAELGKHSADYGPPTKRRRGGEVGLSNILERIVETLRENTELSYLFLKPVAKKEAPDYLDIIERPMDLSTIRGKVRRMEYKDREDFRHDVWQIAFNAHKYNDGRHPAIPPLADQLLELCDYLIDEYHESLSEAEAGI 498 +DY ++NDRR+ ER R + + ++ + A+Y P KRR+ GEVGL+NILERIV+TLR E+S LFLKPV+KKEAPDYLDI+E PMDLSTIR KVR++EY++RE FRHDVWQI +NAH YNDGR+P IPPLADQLLE+CDYL+D+Y + L EAE GI Sbjct: 1756 EDYPPRKNDRRLSERGRNVRSRYVSDFERDGAEYAPQPKRRKKGEVGLANILERIVDTLRLKEEVSRLFLKPVSKKEAPDYLDIVENPMDLSTIRDKVRKIEYRNREQFRHDVWQIKYNAHLYNDGRNPGIPPLADQLLEICDYLLDDYEDQLKEAEKGI 1915
BLAST of CX290834 vs. ExPASy Swiss-Prot
Match: TAF1_ORYSJ (Transcription initiation factor TFIID subunit 1 OS=Oryza sativa subsp. japonica GN=TAF1 PE=2 SV=1) HSP 1 Score: 201.83 bits (512), Expect = 2.929e-51 Identity = 104/160 (65.00%), Postives = 121/160 (75.62%), Query Frame = 1 Query: 22 DYRAKRNDRRMPERDRGAKRKPGAELGKHSADYGPPTKRRRGGEVGLSNILERIVETLRENTELSYLFLKPVAKKEAPDYLDIIERPMDLSTIRGKVRRMEYKDREDFRHDVWQIAFNAHKYNDGRHPAIPPLADQLLELCDYLIDEYHESLSEAEAGIQ 501 D R +NDRR+PER R AKR+ A++ +Y PP KR RGGEV LSNILE+IV+ LR S+LF KPV KKEAPDY DIIERPMDL TIR KVR+MEYK+REDFRHDV QIA NAH YN RHP IPPLAD+LLELCDYL++E + L +AE I+ Sbjct: 1655 DPRPYKNDRRVPERGRAAKRRTPADM----TEYTPPAKRHRGGEVELSNILEKIVDHLR-TMSCSFLFRKPVTKKEAPDYFDIIERPMDLGTIRDKVRKMEYKNREDFRHDVAQIALNAHTYNLNRHPHIPPLADELLELCDYLLEESADVLDDAEYAIE 1809
BLAST of CX290834 vs. ExPASy Swiss-Prot
Match: TAF1B_ARATH (Transcription initiation factor TFIID subunit 1-B OS=Arabidopsis thaliana GN=HAF2 PE=2 SV=1) HSP 1 Score: 189.119 bits (479), Expect = 1.965e-47 Identity = 93/161 (57.76%), Postives = 119/161 (73.91%), Query Frame = 1 Query: 19 QDYRAKRNDRRMPERDRGAKRKPGAELGKHSADYGPPTKRRRGGEVGLSNILERIVETLR-ENTELSYLFLKPVAKKEAPDYLDIIERPMDLSTIRGKVRRMEYKDREDFRHDVWQIAFNAHKYNDGRHPAIPPLADQLLELCDYLIDEYHESLSEAEAGI 498 ++Y +RND E + ++ ++ +Y P KRR+ G+VGL+NILE IV+TLR + +SYLFLKPV KKEAP+YL+I++ PMDLSTIR KVRRMEY+DR+ FRHDVWQI FNAH YNDGR+ +IPPLAD+LL CD L+DEY + L EAE GI Sbjct: 1618 ENYPPRRNDGISSESGQNINSLCVSDFERNRTEYAPQPKRRKKGQVGLANILESIVDTLRVKEVNVSYLFLKPVTKKEAPNYLEIVKCPMDLSTIRDKVRRMEYRDRQQFRHDVWQIKFNAHLYNDGRNLSIPPLADELLVKCDRLLDEYRDELKEAEKGI 1778
BLAST of CX290834 vs. ExPASy Swiss-Prot
Match: TAF1_MOUSE (Transcription initiation factor TFIID subunit 1 OS=Mus musculus GN=Taf1 PE=2 SV=2) HSP 1 Score: 77.411 bits (189), Expect = 8.331e-14 Identity = 46/122 (37.70%), Postives = 67/122 (54.92%), Query Frame = 1 Query: 133 KRRRGGEVGLSNILERIVETLRENTELSYLFLKPVAKKEAPDYLDIIERPMDLSTIRGKVRRMEYKDREDFRHDVWQIAFNAHKYNDGRHPAIPPLADQLLELCDYLIDEYHESLSEAEAGI 498 +RR V LS+ILE I+ +R+ +Y F PV K DY II RPMDL T+R VR+ Y RE+FR + I N+ YN +H ++ ++ +L+LCD + E + L+ E I Sbjct: 1397 RRRTDPMVTLSSILESIINDMRDLPN-TYPFHTPVNAKVVKDYYKIITRPMDLQTLRENVRKRLYPSREEFREHLELIVKNSATYNGPKH-SLTQISQSMLDLCDEKLKEKEDKLARLEKAI 1516 HSP 2 Score: 70.0922 bits (170), Expect = 1.330e-11 Identity = 43/116 (37.07%), Postives = 59/116 (50.86%), Query Frame = 1 Query: 151 EVGLSNILERIVETLRENTELSYLFLKPVAKKEAPDYLDIIERPMDLSTIRGKVRRMEYKDREDFRHDVWQIAFNAHKYNDGRHPAIPPLADQLLELCDYLIDEYHESLSEAEAGI 498 +V S IL+ IV S+ F PV KK PDY +I PMDL TIR + + +Y+ RE F DV I N+ KYN G A +++ +C + EY E L++ E I Sbjct: 1525 QVAFSFILDNIVTQKMMAVPDSWPFHHPVNKKFVPDYYKVIVSPMDLETIRKNISKHKYQSRESFLDDVNLILANSVKYN-GPESQYTKTAQEIVNVCHQTLTEYDEHLTQLEKDI 1639
BLAST of CX290834 vs. ExPASy Swiss-Prot
Match: TAF1_MESAU (Transcription initiation factor TFIID subunit 1 OS=Mesocricetus auratus GN=TAF1 PE=2 SV=1) HSP 1 Score: 77.411 bits (189), Expect = 8.331e-14 Identity = 46/122 (37.70%), Postives = 67/122 (54.92%), Query Frame = 1 Query: 133 KRRRGGEVGLSNILERIVETLRENTELSYLFLKPVAKKEAPDYLDIIERPMDLSTIRGKVRRMEYKDREDFRHDVWQIAFNAHKYNDGRHPAIPPLADQLLELCDYLIDEYHESLSEAEAGI 498 +RR V LS+ILE I+ +R+ +Y F PV K DY II RPMDL T+R VR+ Y RE+FR + I N+ YN +H ++ ++ +L+LCD + E + L+ E I Sbjct: 1371 RRRTDPMVTLSSILESIINDMRDLPN-TYPFHTPVNAKVVKDYYKIITRPMDLQTLRENVRKRLYPSREEFREHLELIVKNSATYNGPKH-SLTQISQSMLDLCDEKLKEKEDKLARLEKAI 1490 HSP 2 Score: 69.707 bits (169), Expect = 1.737e-11 Identity = 43/116 (37.07%), Postives = 59/116 (50.86%), Query Frame = 1 Query: 151 EVGLSNILERIVETLRENTELSYLFLKPVAKKEAPDYLDIIERPMDLSTIRGKVRRMEYKDREDFRHDVWQIAFNAHKYNDGRHPAIPPLADQLLELCDYLIDEYHESLSEAEAGI 498 +V S IL+ IV S+ F PV KK PDY +I PMDL TIR + + +Y+ RE F DV I N+ KYN G A +++ +C + EY E L++ E I Sbjct: 1499 QVAFSFILDNIVTQKMMAVPDSWPFHHPVNKKFVPDYYKVIVSPMDLETIRKNISKHKYQSRESFLDDVNLILANSVKYN-GSESQYTKTAQEIVNVCYQTLTEYDEHLTQLEKDI 1613
BLAST of CX290834 vs. ExPASy Swiss-Prot
Match: TAF1_HUMAN (Transcription initiation factor TFIID subunit 1 OS=Homo sapiens GN=TAF1 PE=1 SV=2) HSP 1 Score: 77.411 bits (189), Expect = 8.331e-14 Identity = 46/122 (37.70%), Postives = 67/122 (54.92%), Query Frame = 1 Query: 133 KRRRGGEVGLSNILERIVETLRENTELSYLFLKPVAKKEAPDYLDIIERPMDLSTIRGKVRRMEYKDREDFRHDVWQIAFNAHKYNDGRHPAIPPLADQLLELCDYLIDEYHESLSEAEAGI 498 +RR V LS+ILE I+ +R+ +Y F PV K DY II RPMDL T+R VR+ Y RE+FR + I N+ YN +H ++ ++ +L+LCD + E + L+ E I Sbjct: 1376 RRRTDPMVTLSSILESIINDMRDLPN-TYPFHTPVNAKVVKDYYKIITRPMDLQTLRENVRKRLYPSREEFREHLELIVKNSATYNGPKH-SLTQISQSMLDLCDEKLKEKEDKLARLEKAI 1495 HSP 2 Score: 69.707 bits (169), Expect = 1.737e-11 Identity = 43/116 (37.07%), Postives = 59/116 (50.86%), Query Frame = 1 Query: 151 EVGLSNILERIVETLRENTELSYLFLKPVAKKEAPDYLDIIERPMDLSTIRGKVRRMEYKDREDFRHDVWQIAFNAHKYNDGRHPAIPPLADQLLELCDYLIDEYHESLSEAEAGI 498 +V S IL+ IV S+ F PV KK PDY +I PMDL TIR + + +Y+ RE F DV I N+ KYN G A +++ +C + EY E L++ E I Sbjct: 1504 QVAFSFILDNIVTQKMMAVPDSWPFHHPVNKKFVPDYYKVIVNPMDLETIRKNISKHKYQSRESFLDDVNLILANSVKYN-GPESQYTKTAQEIVNVCYQTLTEYDEHLTQLEKDI 1618
BLAST of CX290834 vs. ExPASy Swiss-Prot
Match: TAF1_DICDI (Transcription initiation factor TFIID subunit 1 OS=Dictyostelium discoideum GN=taf1 PE=3 SV=1) HSP 1 Score: 77.0258 bits (188), Expect = 1.088e-13 Identity = 43/122 (35.25%), Postives = 66/122 (54.10%), Query Frame = 1 Query: 145 GGEVGLSNILERIVETLRENTELSYLFLKPVAKKEAPDYLDIIERPMDLSTIRGKVRRMEYKDREDFRHDVWQIAFNAHKYNDGRHPAIPPLADQLLELCDYLIDEYHESLSEAEAGIQSRN 510 G +V LSNI ERI++ LR N E F V K APDY +I+ P+DL+T+R + R EYK + F + + N +YN+ R + P+A++LL L+ + + + E I+ N Sbjct: 2112 GADVELSNIFERILDKLRTNDEF-IAFRHKVTPKLAPDYHKVIKNPIDLTTMRDRNRHWEYKSKNQFIDAIKLMVANCFEYNEKRFSHLLPIAEKLLTSTLQLLAPFDSQIGDLEKSIEQTN 2232
BLAST of CX290834 vs. ExPASy Swiss-Prot
Match: TAF1L_HUMAN (Transcription initiation factor TFIID subunit 1-like OS=Homo sapiens GN=TAF1L PE=1 SV=1) HSP 1 Score: 75.485 bits (184), Expect = 3.166e-13 Identity = 45/122 (36.89%), Postives = 67/122 (54.92%), Query Frame = 1 Query: 133 KRRRGGEVGLSNILERIVETLRENTELSYLFLKPVAKKEAPDYLDIIERPMDLSTIRGKVRRMEYKDREDFRHDVWQIAFNAHKYNDGRHPAIPPLADQLLELCDYLIDEYHESLSEAEAGI 498 +RR V LS+ILE I+ +R+ ++ F PV K DY II RPMDL T+R VR+ Y RE+FR + I N+ YN +H ++ ++ +L+LCD + E + L+ E I Sbjct: 1395 RRRTDPMVTLSSILESIINDMRDLPN-THPFHTPVNAKVVKDYYKIITRPMDLQTLRENVRKCLYPSREEFREHLELIVKNSATYNGPKH-SLTQISQSMLDLCDEKLKEKEDKLARLEKAI 1514 HSP 2 Score: 68.5514 bits (166), Expect = 3.870e-11 Identity = 43/116 (37.07%), Postives = 59/116 (50.86%), Query Frame = 1 Query: 151 EVGLSNILERIVETLRENTELSYLFLKPVAKKEAPDYLDIIERPMDLSTIRGKVRRMEYKDREDFRHDVWQIAFNAHKYNDGRHPAIPPLADQLLELCDYLIDEYHESLSEAEAGI 498 +V S IL+ IV S+ F PV KK PDY +I P+DL TIR + + +Y+ RE F DV I N+ KYN G A +++ +C I EY E L++ E I Sbjct: 1523 QVAFSFILDNIVTQKMMAVPDSWPFHHPVNKKFVPDYYKMIVNPVDLETIRKNISKHKYQSRESFLDDVNLILANSVKYN-GPESQYTKTAQEIVNICYQTITEYDEHLTQLEKDI 1637
BLAST of CX290834 vs. ExPASy Swiss-Prot
Match: YB0B_SCHPO (Bromodomain-containing protein C25H2.11c OS=Schizosaccharomyces pombe GN=SPBC25H2.11c PE=1 SV=1) HSP 1 Score: 73.1738 bits (178), Expect = 1.571e-12 Identity = 48/138 (34.78%), Postives = 71/138 (51.45%), Query Frame = 1 Query: 139 RRGGEVGLSNILERIVETLRENTELSYLFLKPVAKKEAPDYLDIIERPMDLSTIRGKVRRMEYKDREDFRHDVWQIAFNAHKYNDGRHPAIPP------LADQLLELCDYLID-------EYHESLSEAEAGIQSRNT 513 +R G+ L E++V LR TE S FL V+K++APDY +I+ PMDL TI ++ + Y +++F HD+ I N YN HP P + D+ LEL + + D +Y +SL EAE +T Sbjct: 296 QRIGQEELYEAAEKVVLELRSYTEHSLAFLTKVSKRDAPDYYTVIKEPMDLGTILRNLKNLHYNSKKEFVHDLMLIWSNCFLYNS--HPDHPLRVHAQFMKDKSLELINLIPDIVIQSRKDYDDSLIEAELESDEEST 431
BLAST of CX290834 vs. ExPASy Swiss-Prot
Match: TAF1_DROME (Transcription initiation factor TFIID subunit 1 OS=Drosophila melanogaster GN=Taf1 PE=1 SV=3) HSP 1 Score: 68.9366 bits (167), Expect = 2.963e-11 Identity = 46/122 (37.70%), Postives = 64/122 (52.46%), Query Frame = 1 Query: 133 KRRRGGEVGLSNILERIVETLRENTELSYLFLKPVAKKEAPDYLDIIERPMDLSTIRGKVRRMEYKDREDFRHDVWQIAFNAHKYNDGRHPAIPPLADQLLELCDYLIDEYHESLSEAEAGI 498 +RR V LS+ILE I LR ++S FL PV+ K+ PDY ++ +PMDL T+R +R+ Y RE F D+ QI N+ YN G A A ++ C L+ E + L E I Sbjct: 1466 RRRTDPVVVLSSILEIIHNELRSMPDVSP-FLFPVSAKKVPDYYRVVTKPMDLQTMREYIRQRRYTSREMFLEDLKQIVDNSLIYN-GPQSAYTLAAQRMFSSCFELLAEREDKLMRLEKAI 1585 The following BLAST results are available for this feature:
BLAST of CX290834 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 10
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >CX290834 ID=CX290834; Name=CX290834; organism=Citrus clementina; type=EST; length=713bpback to top |