CX290885

Overview
NameCX290885
Unique NameCX290885
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length524
Libraries
Library NameType
OF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15451 contig Ccv1_Contig15451:206..729. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX290885 vs. ExPASy Swiss-Prot
Match: SEH1_XENTR (Nucleoporin seh1 OS=Xenopus tropicalis GN=seh1l PE=2 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 4.066e-15
Identity = 48/167 (28.74%), Postives = 74/167 (44.31%), Query Frame = 3
Query:   15 CNLKTKVHAGAILKVVWVPPEFGDAVACICSDGSLLLWEEIVEDAQ-----PLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQNAIDSVTMFRKASCISASISWNPQKGENQGSSFVLGFNSDTPQ-LNSSKVWEFDE 497
            C    K H+G++ +V W  PEFG  +A    D +  +WEEIV ++         W    +   + T V DV+F      L L    +DG V++YE  D + L  W LQ E            K SC  + ISWNP           +G +  +P  +   +++E++E
Sbjct:   49 CTASWKTHSGSVWRVTWAHPEFGQVLASCSFDRTAAVWEEIVGESNDKLRGQSHWVKRTTLVDSRTSVTDVKFAPKHMGLMLATCSADGVVRIYEAPDVMNLSQWSLQHEIS---------CKLSC--SCISWNPSSSRAHSPMIAVGSDDSSPNIMGKVQIYEYNE 204          
BLAST of CX290885 vs. ExPASy Swiss-Prot
Match: SEH1B_XENLA (Nucleoporin seh1-B OS=Xenopus laevis GN=seh1l-B PE=2 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 4.066e-15
Identity = 48/167 (28.74%), Postives = 74/167 (44.31%), Query Frame = 3
Query:   15 CNLKTKVHAGAILKVVWVPPEFGDAVACICSDGSLLLWEEIVEDAQ-----PLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQNAIDSVTMFRKASCISASISWNPQKGENQGSSFVLGFNSDTPQ-LNSSKVWEFDE 497
            C    K H+G++ +V W  PEFG  +A    D +  +WEEIV ++         W    +   + T V DV+F      L L    +DG V++YE  D + L  W LQ E            K SC  + ISWNP           +G +  +P  +   +++E++E
Sbjct:   49 CTASWKTHSGSVWRVTWAHPEFGQVLASCSFDRTAAVWEEIVGESNDKLRGQSHWVKRTTLVDSRTSVTDVKFAPKHMGLMLATCSADGVVRIYEAPDVMNLSQWSLQHEIS---------CKLSC--SCISWNPSSSRAHSPMIAVGSDDSSPNIMGKVQIYEYNE 204          
BLAST of CX290885 vs. ExPASy Swiss-Prot
Match: SEH1A_XENLA (Nucleoporin seh1-A OS=Xenopus laevis GN=seh1l-A PE=2 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 4.066e-15
Identity = 48/167 (28.74%), Postives = 74/167 (44.31%), Query Frame = 3
Query:   15 CNLKTKVHAGAILKVVWVPPEFGDAVACICSDGSLLLWEEIVEDAQ-----PLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQNAIDSVTMFRKASCISASISWNPQKGENQGSSFVLGFNSDTPQ-LNSSKVWEFDE 497
            C    K H+G++ +V W  PEFG  +A    D +  +WEEIV ++         W    +   + T V DV+F      L L    +DG V++YE  D + L  W LQ E            K SC  + ISWNP           +G +  +P  +   +++E++E
Sbjct:   49 CTASWKTHSGSVWRVTWAHPEFGQVLASCSFDRTAAVWEEIVGESNDKLRGQSHWVKRTTLVDSRTSVTDVKFAPKHMGLMLATCSADGVVRIYEAPDVMNLSQWSLQHEIS---------CKLSC--SCISWNPSSSRAHSPMIAVGSDDSSPNIMGKVQIYEYNE 204          
BLAST of CX290885 vs. ExPASy Swiss-Prot
Match: SEH1_OSMMO (Nucleoporin seh1 OS=Osmerus mordax GN=seh1l PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 5.310e-15
Identity = 51/177 (28.81%), Postives = 78/177 (44.07%), Query Frame = 3
Query:    9 FTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDGSLLLWEEIVEDAQPLQ-----WKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQNAIDSVTMFRKASCISASISWNPQKGENQGSSFVLGF-NSDTPQLNSSKVWEFDEAHNRWLPV 521
            + C    K H+G++ +V W  PEFG  +A    D +  +WEEIV ++   Q     W    +   + T V DV+F      L L    +DG V++YE  D + L  W LQ E            K SC  + ISWNP           +G  +S+T      +++E+ E   ++  V
Sbjct:   47 WNCTASWKTHSGSVWRVTWAHPEFGQVLASCSFDRTAAVWEEIVGESNDKQRGLSHWIKRTTLVDSRTSVTDVKFAPKHMGLMLTTCSADGVVRIYEAPDVMNLSQWSLQHEIS---------CKLSC--SCISWNPSSSRAHSPMIAVGSDDSNTAYSGKVQIYEYVENTRKYAKV 212          
BLAST of CX290885 vs. ExPASy Swiss-Prot
Match: SEH1_PONAB (Nucleoporin SEH1 OS=Pongo abelii GN=SEH1L PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 9.057e-15
Identity = 48/167 (28.74%), Postives = 74/167 (44.31%), Query Frame = 3
Query:   15 CNLKTKVHAGAILKVVWVPPEFGDAVACICSDGSLLLWEEIVEDAQ-----PLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQNAIDSVTMFRKASCISASISWNPQKGENQGSSFVLGFNSDTPQ-LNSSKVWEFDE 497
            C    K H+G++ +V W  PEFG  +A    D +  +WEEIV ++         W    +   + T V DV+F      L L    +DG V++YE  D + L  W LQ E            K SC  + ISWNP           +G +  +P  +   +++E++E
Sbjct:   49 CTASWKTHSGSVWRVTWAHPEFGQVLASCSFDRTAAVWEEIVGESNDKLRGQSHWVKRTTLVDSRTSVTDVKFAPKHMGLMLATCSADGIVRIYEAPDVMNLSQWSLQHEIS---------CKLSC--SCISWNPSSSRAHSPMIAVGSDDSSPNAMAKVQIFEYNE 204          
BLAST of CX290885 vs. ExPASy Swiss-Prot
Match: SEH1_HUMAN (Nucleoporin SEH1 OS=Homo sapiens GN=SEH1L PE=1 SV=3)

HSP 1 Score: 79.7221 bits (195), Expect = 9.057e-15
Identity = 48/167 (28.74%), Postives = 74/167 (44.31%), Query Frame = 3
Query:   15 CNLKTKVHAGAILKVVWVPPEFGDAVACICSDGSLLLWEEIVEDAQ-----PLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQNAIDSVTMFRKASCISASISWNPQKGENQGSSFVLGFNSDTPQ-LNSSKVWEFDE 497
            C    K H+G++ +V W  PEFG  +A    D +  +WEEIV ++         W    +   + T V DV+F      L L    +DG V++YE  D + L  W LQ E            K SC  + ISWNP           +G +  +P  +   +++E++E
Sbjct:   49 CTASWKTHSGSVWRVTWAHPEFGQVLASCSFDRTAAVWEEIVGESNDKLRGQSHWVKRTTLVDSRTSVTDVKFAPKHMGLMLATCSADGIVRIYEAPDVMNLSQWSLQHEIS---------CKLSC--SCISWNPSSSRAHSPMIAVGSDDSSPNAMAKVQIFEYNE 204          
BLAST of CX290885 vs. ExPASy Swiss-Prot
Match: SEH1_BOVIN (Nucleoporin SEH1 OS=Bos taurus GN=SEH1L PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 9.057e-15
Identity = 48/167 (28.74%), Postives = 74/167 (44.31%), Query Frame = 3
Query:   15 CNLKTKVHAGAILKVVWVPPEFGDAVACICSDGSLLLWEEIVEDAQ-----PLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQNAIDSVTMFRKASCISASISWNPQKGENQGSSFVLGFNSDTPQ-LNSSKVWEFDE 497
            C    K H+G++ +V W  PEFG  +A    D +  +WEEIV ++         W    +   + T V DV+F      L L    +DG V++YE  D + L  W LQ E            K SC  + ISWNP           +G +  +P  +   +++E++E
Sbjct:   49 CTASWKTHSGSVWRVTWAHPEFGQVLASCSFDRTAAVWEEIVGESNDKLRGQSHWVKRTTLVDSRTSVTDVKFAPKHMGLMLATCSADGIVRIYEAPDVMNLSQWSLQHEIS---------CKLSC--SCISWNPSSSRAHAPMIAVGSDDSSPNAMAKVQIFEYNE 204          
BLAST of CX290885 vs. ExPASy Swiss-Prot
Match: SEH1_MOUSE (Nucleoporin SEH1 OS=Mus musculus GN=Seh1l PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 4.495e-14
Identity = 49/167 (29.34%), Postives = 74/167 (44.31%), Query Frame = 3
Query:   15 CNLKTKVHAGAILKVVWVPPEFGDAVACICSDGSLLLWEEIVEDAQ-----PLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQNAIDSVTMFRKASCISASISWNPQKGENQGSSFVLGFNSDTP-QLNSSKVWEFDE 497
            C    K H+G++ +V W  PEFG  +A    D +  +WEEIV ++         W    +   + T V DV+F      L L    +DG V+VYE  D + L  W LQ E       V+     SC    ISWNP           +G +  +P  +   +++E++E
Sbjct:   49 CTASWKTHSGSVWRVTWAHPEFGQVLASCSFDRTAAVWEEIVGESNDKLRGQSHWVKRTTLVDSRTSVTDVKFAPKHMGLMLATCSADGIVRVYEAPDVMNLSQWSLQHE-------VSCKLCCSC----ISWNPSSSRAHPPMIAVGSDDSSPNSMAKVQIFEYNE 204          
BLAST of CX290885 vs. ExPASy Swiss-Prot
Match: SEH1_DANRE (Nucleoporin seh1 OS=Danio rerio GN=seh1l PE=2 SV=2)

HSP 1 Score: 75.0998 bits (183), Expect = 2.231e-13
Identity = 49/161 (30.43%), Postives = 69/161 (42.86%), Query Frame = 3
Query:   15 CNLKTKVHAGAILKVVWVPPEFGDAVACICSDGSLLLWEEIVEDAQPLQ-----WKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQNAIDSVTMFRKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKV 482
            C    K H+G++ +V W  PEFG  +A    D +  +WEEIV ++   Q     W    +   + T V DV+F      L L    +DG V++YE  D + L  W LQ E            K +C  + ISWNP           +G   D+    S KV
Sbjct:   49 CTASWKTHSGSVWRVTWAHPEFGQVLASCSFDRTAAVWEEIVGESNDKQRGQSHWIKRTTLVDSRTSVTDVKFAPKHMGLMLTTCSADGVVRIYEAPDVMNLSQWSLQHEIS---------CKLAC--SCISWNPSSSRAHPPMIAVG-GDDSNGAYSGKV 197          
The following BLAST results are available for this feature:
BLAST of CX290885 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 9
Match NameE-valueIdentityDescription
SEH1_XENTR4.066e-1528.74Nucleoporin seh1 OS=Xenopus tropicalis GN=seh1l PE... [more]
SEH1B_XENLA4.066e-1528.74Nucleoporin seh1-B OS=Xenopus laevis GN=seh1l-B PE... [more]
SEH1A_XENLA4.066e-1528.74Nucleoporin seh1-A OS=Xenopus laevis GN=seh1l-A PE... [more]
SEH1_OSMMO5.310e-1528.81Nucleoporin seh1 OS=Osmerus mordax GN=seh1l PE=2 S... [more]
SEH1_PONAB9.057e-1528.74Nucleoporin SEH1 OS=Pongo abelii GN=SEH1L PE=2 SV=... [more]
SEH1_HUMAN9.057e-1528.74Nucleoporin SEH1 OS=Homo sapiens GN=SEH1L PE=1 SV=... [more]
SEH1_BOVIN9.057e-1528.74Nucleoporin SEH1 OS=Bos taurus GN=SEH1L PE=2 SV=1[more]
SEH1_MOUSE4.495e-1429.34Nucleoporin SEH1 OS=Mus musculus GN=Seh1l PE=2 SV=... [more]
SEH1_DANRE2.231e-1330.43Nucleoporin seh1 OS=Danio rerio GN=seh1l PE=2 SV=2[more]
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Properties
Property NameValue
Genbank descriptionC03001C10Rv OF1 Citrus clementina cDNA clone C03001C10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX290885 ID=CX290885; Name=CX290885; organism=Citrus clementina; type=EST; length=524bp
CTTCCTCATTCACCTGCAACCTCAAAACTAAGGTACATGCGGGTGCCATT
TTAAAGGTTGTTTGGGTGCCACCGGAGTTCGGTGACGCGGTTGCCTGTAT
TTGCTCGGATGGAAGTTTGTTGTTGTGGGAAGAGATTGTTGAAGATGCAC
AGCCTCTGCAGTGGAAGCTCTGTAAGAGCTTTGAAAGCACTTCGACTCAA
GTGTTAGATGTTCAATTTGGAGTCTCTTCCACAAGTTTGAAATTGGTTGC
TGCATACTCAGATGGCCATGTTAAAGTTTATGAGCTCCTAGATCCCTTGA
TACTGAAAAATTGGCAACTTCAGGCTGAATTTCAGAATGCTATTGATTCT
GTGACTATGTTTAGGAAGGCTTCATGCATATCGGCATCCATTTCTTGGAA
TCCACAGAAGGGTGAAAACCAGGGATCTAGTTTTGTTCTCGGGTTCAATT
CAGACACACCACAACTCAATTCCTCCAAGGTATGGGAGTTTGATGAGGCT
CATAATAGATGGCTACCAGTGGCA
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