CX290885
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CX290885 vs. ExPASy Swiss-Prot
Match: SEH1_XENTR (Nucleoporin seh1 OS=Xenopus tropicalis GN=seh1l PE=2 SV=1) HSP 1 Score: 80.8777 bits (198), Expect = 4.066e-15 Identity = 48/167 (28.74%), Postives = 74/167 (44.31%), Query Frame = 3 Query: 15 CNLKTKVHAGAILKVVWVPPEFGDAVACICSDGSLLLWEEIVEDAQ-----PLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQNAIDSVTMFRKASCISASISWNPQKGENQGSSFVLGFNSDTPQ-LNSSKVWEFDE 497 C K H+G++ +V W PEFG +A D + +WEEIV ++ W + + T V DV+F L L +DG V++YE D + L W LQ E K SC + ISWNP +G + +P + +++E++E Sbjct: 49 CTASWKTHSGSVWRVTWAHPEFGQVLASCSFDRTAAVWEEIVGESNDKLRGQSHWVKRTTLVDSRTSVTDVKFAPKHMGLMLATCSADGVVRIYEAPDVMNLSQWSLQHEIS---------CKLSC--SCISWNPSSSRAHSPMIAVGSDDSSPNIMGKVQIYEYNE 204
BLAST of CX290885 vs. ExPASy Swiss-Prot
Match: SEH1B_XENLA (Nucleoporin seh1-B OS=Xenopus laevis GN=seh1l-B PE=2 SV=1) HSP 1 Score: 80.8777 bits (198), Expect = 4.066e-15 Identity = 48/167 (28.74%), Postives = 74/167 (44.31%), Query Frame = 3 Query: 15 CNLKTKVHAGAILKVVWVPPEFGDAVACICSDGSLLLWEEIVEDAQ-----PLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQNAIDSVTMFRKASCISASISWNPQKGENQGSSFVLGFNSDTPQ-LNSSKVWEFDE 497 C K H+G++ +V W PEFG +A D + +WEEIV ++ W + + T V DV+F L L +DG V++YE D + L W LQ E K SC + ISWNP +G + +P + +++E++E Sbjct: 49 CTASWKTHSGSVWRVTWAHPEFGQVLASCSFDRTAAVWEEIVGESNDKLRGQSHWVKRTTLVDSRTSVTDVKFAPKHMGLMLATCSADGVVRIYEAPDVMNLSQWSLQHEIS---------CKLSC--SCISWNPSSSRAHSPMIAVGSDDSSPNIMGKVQIYEYNE 204
BLAST of CX290885 vs. ExPASy Swiss-Prot
Match: SEH1A_XENLA (Nucleoporin seh1-A OS=Xenopus laevis GN=seh1l-A PE=2 SV=1) HSP 1 Score: 80.8777 bits (198), Expect = 4.066e-15 Identity = 48/167 (28.74%), Postives = 74/167 (44.31%), Query Frame = 3 Query: 15 CNLKTKVHAGAILKVVWVPPEFGDAVACICSDGSLLLWEEIVEDAQ-----PLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQNAIDSVTMFRKASCISASISWNPQKGENQGSSFVLGFNSDTPQ-LNSSKVWEFDE 497 C K H+G++ +V W PEFG +A D + +WEEIV ++ W + + T V DV+F L L +DG V++YE D + L W LQ E K SC + ISWNP +G + +P + +++E++E Sbjct: 49 CTASWKTHSGSVWRVTWAHPEFGQVLASCSFDRTAAVWEEIVGESNDKLRGQSHWVKRTTLVDSRTSVTDVKFAPKHMGLMLATCSADGVVRIYEAPDVMNLSQWSLQHEIS---------CKLSC--SCISWNPSSSRAHSPMIAVGSDDSSPNIMGKVQIYEYNE 204
BLAST of CX290885 vs. ExPASy Swiss-Prot
Match: SEH1_OSMMO (Nucleoporin seh1 OS=Osmerus mordax GN=seh1l PE=2 SV=1) HSP 1 Score: 80.4925 bits (197), Expect = 5.310e-15 Identity = 51/177 (28.81%), Postives = 78/177 (44.07%), Query Frame = 3 Query: 9 FTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDGSLLLWEEIVEDAQPLQ-----WKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQNAIDSVTMFRKASCISASISWNPQKGENQGSSFVLGF-NSDTPQLNSSKVWEFDEAHNRWLPV 521 + C K H+G++ +V W PEFG +A D + +WEEIV ++ Q W + + T V DV+F L L +DG V++YE D + L W LQ E K SC + ISWNP +G +S+T +++E+ E ++ V Sbjct: 47 WNCTASWKTHSGSVWRVTWAHPEFGQVLASCSFDRTAAVWEEIVGESNDKQRGLSHWIKRTTLVDSRTSVTDVKFAPKHMGLMLTTCSADGVVRIYEAPDVMNLSQWSLQHEIS---------CKLSC--SCISWNPSSSRAHSPMIAVGSDDSNTAYSGKVQIYEYVENTRKYAKV 212
BLAST of CX290885 vs. ExPASy Swiss-Prot
Match: SEH1_PONAB (Nucleoporin SEH1 OS=Pongo abelii GN=SEH1L PE=2 SV=1) HSP 1 Score: 79.7221 bits (195), Expect = 9.057e-15 Identity = 48/167 (28.74%), Postives = 74/167 (44.31%), Query Frame = 3 Query: 15 CNLKTKVHAGAILKVVWVPPEFGDAVACICSDGSLLLWEEIVEDAQ-----PLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQNAIDSVTMFRKASCISASISWNPQKGENQGSSFVLGFNSDTPQ-LNSSKVWEFDE 497 C K H+G++ +V W PEFG +A D + +WEEIV ++ W + + T V DV+F L L +DG V++YE D + L W LQ E K SC + ISWNP +G + +P + +++E++E Sbjct: 49 CTASWKTHSGSVWRVTWAHPEFGQVLASCSFDRTAAVWEEIVGESNDKLRGQSHWVKRTTLVDSRTSVTDVKFAPKHMGLMLATCSADGIVRIYEAPDVMNLSQWSLQHEIS---------CKLSC--SCISWNPSSSRAHSPMIAVGSDDSSPNAMAKVQIFEYNE 204
BLAST of CX290885 vs. ExPASy Swiss-Prot
Match: SEH1_HUMAN (Nucleoporin SEH1 OS=Homo sapiens GN=SEH1L PE=1 SV=3) HSP 1 Score: 79.7221 bits (195), Expect = 9.057e-15 Identity = 48/167 (28.74%), Postives = 74/167 (44.31%), Query Frame = 3 Query: 15 CNLKTKVHAGAILKVVWVPPEFGDAVACICSDGSLLLWEEIVEDAQ-----PLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQNAIDSVTMFRKASCISASISWNPQKGENQGSSFVLGFNSDTPQ-LNSSKVWEFDE 497 C K H+G++ +V W PEFG +A D + +WEEIV ++ W + + T V DV+F L L +DG V++YE D + L W LQ E K SC + ISWNP +G + +P + +++E++E Sbjct: 49 CTASWKTHSGSVWRVTWAHPEFGQVLASCSFDRTAAVWEEIVGESNDKLRGQSHWVKRTTLVDSRTSVTDVKFAPKHMGLMLATCSADGIVRIYEAPDVMNLSQWSLQHEIS---------CKLSC--SCISWNPSSSRAHSPMIAVGSDDSSPNAMAKVQIFEYNE 204
BLAST of CX290885 vs. ExPASy Swiss-Prot
Match: SEH1_BOVIN (Nucleoporin SEH1 OS=Bos taurus GN=SEH1L PE=2 SV=1) HSP 1 Score: 79.7221 bits (195), Expect = 9.057e-15 Identity = 48/167 (28.74%), Postives = 74/167 (44.31%), Query Frame = 3 Query: 15 CNLKTKVHAGAILKVVWVPPEFGDAVACICSDGSLLLWEEIVEDAQ-----PLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQNAIDSVTMFRKASCISASISWNPQKGENQGSSFVLGFNSDTPQ-LNSSKVWEFDE 497 C K H+G++ +V W PEFG +A D + +WEEIV ++ W + + T V DV+F L L +DG V++YE D + L W LQ E K SC + ISWNP +G + +P + +++E++E Sbjct: 49 CTASWKTHSGSVWRVTWAHPEFGQVLASCSFDRTAAVWEEIVGESNDKLRGQSHWVKRTTLVDSRTSVTDVKFAPKHMGLMLATCSADGIVRIYEAPDVMNLSQWSLQHEIS---------CKLSC--SCISWNPSSSRAHAPMIAVGSDDSSPNAMAKVQIFEYNE 204
BLAST of CX290885 vs. ExPASy Swiss-Prot
Match: SEH1_MOUSE (Nucleoporin SEH1 OS=Mus musculus GN=Seh1l PE=2 SV=1) HSP 1 Score: 77.411 bits (189), Expect = 4.495e-14 Identity = 49/167 (29.34%), Postives = 74/167 (44.31%), Query Frame = 3 Query: 15 CNLKTKVHAGAILKVVWVPPEFGDAVACICSDGSLLLWEEIVEDAQ-----PLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQNAIDSVTMFRKASCISASISWNPQKGENQGSSFVLGFNSDTP-QLNSSKVWEFDE 497 C K H+G++ +V W PEFG +A D + +WEEIV ++ W + + T V DV+F L L +DG V+VYE D + L W LQ E V+ SC ISWNP +G + +P + +++E++E Sbjct: 49 CTASWKTHSGSVWRVTWAHPEFGQVLASCSFDRTAAVWEEIVGESNDKLRGQSHWVKRTTLVDSRTSVTDVKFAPKHMGLMLATCSADGIVRVYEAPDVMNLSQWSLQHE-------VSCKLCCSC----ISWNPSSSRAHPPMIAVGSDDSSPNSMAKVQIFEYNE 204
BLAST of CX290885 vs. ExPASy Swiss-Prot
Match: SEH1_DANRE (Nucleoporin seh1 OS=Danio rerio GN=seh1l PE=2 SV=2) HSP 1 Score: 75.0998 bits (183), Expect = 2.231e-13 Identity = 49/161 (30.43%), Postives = 69/161 (42.86%), Query Frame = 3 Query: 15 CNLKTKVHAGAILKVVWVPPEFGDAVACICSDGSLLLWEEIVEDAQPLQ-----WKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQNAIDSVTMFRKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKV 482 C K H+G++ +V W PEFG +A D + +WEEIV ++ Q W + + T V DV+F L L +DG V++YE D + L W LQ E K +C + ISWNP +G D+ S KV Sbjct: 49 CTASWKTHSGSVWRVTWAHPEFGQVLASCSFDRTAAVWEEIVGESNDKQRGQSHWIKRTTLVDSRTSVTDVKFAPKHMGLMLTTCSADGVVRIYEAPDVMNLSQWSLQHEIS---------CKLAC--SCISWNPSSSRAHPPMIAVG-GDDSNGAYSGKV 197 The following BLAST results are available for this feature:
BLAST of CX290885 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 9
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >CX290885 ID=CX290885; Name=CX290885; organism=Citrus clementina; type=EST; length=524bpback to top |