CX290888
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CX290888 vs. ExPASy Swiss-Prot
Match: GGPPS_HEVBR (Geranylgeranyl pyrophosphate synthetase, chloroplastic OS=Hevea brasiliensis GN=GGPS PE=1 SV=1) HSP 1 Score: 224.557 bits (571), Expect = 2.651e-58 Identity = 111/178 (62.36%), Postives = 136/178 (76.40%), Query Frame = 2 Query: 56 MSCVNLAAWTQTCSIFNQASSRRSNKTQ---PFRTLKTLPVSLASQRPRRPVS-ISAVQTLEENPA------PSPTFDFKSYMIQKASTVNQALDAAVSLKDPVKIHESMRYSLLAGGKRVRPVLCLAACDLVGGHESMAMPAACSIEMIHTMSLIHDDLPCMDNDPLRRGKPTNHTI 559 MS VNL +W T + NQA+ RS PF LK+L +S A ++ RP+S +SA+ T EE P P+FDFKSYM+QK +++NQAL+AA+ L++P KIHESMRYSLLAGGKRVRP LCLAAC+LVGG++SMAMPAAC++EMIHTMSLIHDDLPCMDND LRRGKPTNH + Sbjct: 1 MSSVNLGSWVHTSYVLNQATRSRSKSKSFSLPFNPLKSLAISFAYRKSERPISSVSAIITKEEETLQEEQNNPPPSFDFKSYMLQKGNSINQALEAAIPLQEPAKIHESMRYSLLAGGKRVRPALCLAACELVGGNDSMAMPAACAVEMIHTMSLIHDDLPCMDNDDLRRGKPTNHIV 178
BLAST of CX290888 vs. ExPASy Swiss-Prot
Match: GGPPS_SINAL (Geranylgeranyl pyrophosphate synthetase, chloroplastic/chromoplastic OS=Sinapis alba GN=GGPS1 PE=1 SV=1) HSP 1 Score: 188.348 bits (477), Expect = 2.105e-47 Identity = 95/148 (64.19%), Postives = 117/148 (79.05%), Query Frame = 2 Query: 122 RSNKTQPFRTLKTLPVSLASQRPRRPVSISAVQTLEEN--PAPSPTFDFKSYMIQKASTVNQALDAAVSLKDPVKIHESMRYSLLAGGKRVRPVLCLAACDLVGGHESMAMPAACSIEMIHTMSLIHDDLPCMDNDPLRRGKPTNHTI 559 RS TLK P+SL +R S S++ T E+N + S +FDF SY+I+KA +VN+ALD+AV L++P+KIHE+MRYSLLAGGKRVRPVLC+AAC+LVGG ES+AMPA C++EMIHTMSLIHDDLPCMDND LRRGKPTNH + Sbjct: 26 RSRSPPSLITLK--PISLTPKRTVSSSSSSSLITKEDNNLKSSSSSFDFMSYIIRKADSVNKALDSAVPLREPLKIHEAMRYSLLAGGKRVRPVLCIAACELVGGEESLAMPARCAVEMIHTMSLIHDDLPCMDNDDLRRGKPTNHKV 171
BLAST of CX290888 vs. ExPASy Swiss-Prot
Match: GGPP1_ARATH (Geranylgeranyl pyrophosphate synthetase 1, chloroplastic OS=Arabidopsis thaliana GN=GGPS1 PE=2 SV=2) HSP 1 Score: 182.185 bits (461), Expect = 1.509e-45 Identity = 92/139 (66.19%), Postives = 110/139 (79.14%), Query Frame = 2 Query: 158 TLPVSLASQRP---RRPVSISAVQTLEENPAPSP--TFDFKSYMIQKASTVNQALDAAVSLKDPVKIHESMRYSLLAGGKRVRPVLCLAACDLVGGHESMAMPAACSIEMIHTMSLIHDDLPCMDNDPLRRGKPTNHTI 559 T P+S S+R + S+V T E+N S +FDF SY+I KA VN+ALD+AV L++P+KIHE+MRYSLLAGGKRVRPVLC+AAC+LVGG ES AMPAAC++EMIHTMSLIHDDLPCMDND LRRGKPTNH + Sbjct: 37 TKPISFRSKRTVSSSSSIVSSSVVTKEDNLRQSEPSSFDFMSYIITKAELVNKALDSAVPLREPLKIHEAMRYSLLAGGKRVRPVLCIAACELVGGEESTAMPAACAVEMIHTMSLIHDDLPCMDNDDLRRGKPTNHKV 175
BLAST of CX290888 vs. ExPASy Swiss-Prot
Match: GGPPS_CAPAN (Geranylgeranyl pyrophosphate synthetase, chloroplastic OS=Capsicum annuum GN=GGPS1 PE=3 SV=1) HSP 1 Score: 179.489 bits (454), Expect = 9.780e-45 Identity = 97/179 (54.19%), Postives = 125/179 (69.83%), Query Frame = 2 Query: 47 LTKMSCVNLAAWTQTCSIFNQASSRRSNK---TQPFRTLKTLPVSLASQRPRRPVSISAVQTLEENPA-----PSPTFDFKSYMIQKASTVNQALDAAVSLKDPVKIHESMRYSLLAGGKRVRPVLCLAACDLVGGHESMAMPAACSIEMIHTMSLIHDDLPCMDNDPLRRGKPTNHTI 559 + M+ V+L A Q C +FNQ S +S P + K P L +RP P+++SA+ T +E+ F+FK Y+ +KA +VN+ALD A+ +K+P IHE+MRYSLLAGGKRVRP+LCLAAC+LVGG++ AM AAC++EMIHTMSLIHDDLPCMDND LRRGKPTNH I Sbjct: 1 MRSMNLVDLWA-QQACLVFNQTLSYKSFNGFMKIPLKNSKINP-KLNKKRPFSPLTVSAIATTKEDERIEAAQTEEPFNFKIYVTEKAISVNKALDEAIIVKEPHVIHEAMRYSLLAGGKRVRPMLCLAACELVGGNQENAMAAACAVEMIHTMSLIHDDLPCMDNDDLRRGKPTNHKI 177
BLAST of CX290888 vs. ExPASy Swiss-Prot
Match: GGPPS_CATRO (Geranylgeranyl pyrophosphate synthetase, chloroplastic OS=Catharanthus roseus GN=GGPS1 PE=3 SV=1) HSP 1 Score: 177.178 bits (448), Expect = 4.854e-44 Identity = 96/166 (57.83%), Postives = 122/166 (73.49%), Query Frame = 2 Query: 122 RSNKTQPFRTLKTLPVSL-ASQRPRRPV------SISAV----QTLEENPAPSP---------TFDFKSYMIQKASTVNQALDAAVSLKDPVKIHESMRYSLLAGGKRVRPVLCLAACDLVGGHESMAMPAACSIEMIHTMSLIHDDLPCMDNDPLRRGKPTNHTI 559 RSN P + LP+S S R+P+ SISA+ QT EE+ + S +FDFK+YMI KA++VN+AL+ AV +++P+KIHESMRYSLLAGGKRVRP+LC+AAC+L GG ES+AMP+AC++EMIHTMSL+HDDLPCMDND LRRGKPTNH + Sbjct: 2 RSNLCHPLKN--QLPISFFLSGTIRKPIFSCSRLSISAIITKEQTQEESESKSKKEVAFSSSSSFDFKAYMIGKANSVNKALEDAVLVREPLKIHESMRYSLLAGGKRVRPMLCIAACELFGGTESVAMPSACAVEMIHTMSLMHDDLPCMDNDDLRRGKPTNHKV 165
BLAST of CX290888 vs. ExPASy Swiss-Prot
Match: GGPP4_ARATH (Geranylgeranyl pyrophosphate synthetase 4 OS=Arabidopsis thaliana GN=GGPP4 PE=2 SV=1) HSP 1 Score: 163.696 bits (413), Expect = 5.553e-40 Identity = 78/150 (52.00%), Postives = 108/150 (72.00%), Query Frame = 2 Query: 110 ASSRRSNKTQPFRTLKTLPVSLASQRPRRPVSISAVQTLEENPAPSPTFDFKSYMIQKASTVNQALDAAVSLKDPVKIHESMRYSLLAGGKRVRPVLCLAACDLVGGHESMAMPAACSIEMIHTMSLIHDDLPCMDNDPLRRGKPTNHTI 559 A++RR + + ++ +++ R S+++ + E +FDFK YMI KA T+N+ALD A+ L +P+ IH++MRY++LAGGKRVRP+LCLAAC+LVGG E +A+ AAC++EMIHTMSLI DDLPCMDND LRRGKPT H + Sbjct: 31 ANTRRLIRLLHIPIKSPVAAAIFARKDTREFLDSSIKLVNEEDDFGFSFDFKPYMISKAETINRALDEAIPLIEPLNIHKAMRYAILAGGKRVRPILCLAACELVGGEERLAIQAACAVEMIHTMSLIKDDLPCMDNDDLRRGKPTTHKV 180
BLAST of CX290888 vs. ExPASy Swiss-Prot
Match: GGPP3_ARATH (Geranylgeranyl pyrophosphate synthetase 3, chloroplastic OS=Arabidopsis thaliana GN=GGPP3 PE=2 SV=1) HSP 1 Score: 162.155 bits (409), Expect = 1.616e-39 Identity = 84/159 (52.83%), Postives = 109/159 (68.55%), Query Frame = 2 Query: 95 SIFNQASSRRSNKTQPFRTLKTL----PVSLASQRPRRPVSISAVQTLEENPAPSPTFDFKSYMIQKASTVNQALDAAVSLKDPVKIHESMRYSLLAGGKRVRPVLCLAACDLVGGHESMAMPAACSIEMIHTMSLIHDDLPCMDNDPLRRGKPTNHTI 559 S+F Q+ RR N ++LK P S + + R + + + N A FDFK YMI+KA +VN ALD +V L++P+ + E++RYSLLAGGKRVRP+LC+A C+LVGG E+ AM AAC++EMIHT SLIHDDLPCMDN LRRGKPTNH + Sbjct: 11 SLFIQSRGRRDNSISSVKSLKKRTGLSPSSALTSQGGRDMIPPEGKCNDHNSA----FDFKLYMIRKAESVNAALDVSVPLREPLTVQEAVRYSLLAGGKRVRPLLCIAVCELVGGDEATAMSAACAVEMIHTSSLIHDDLPCMDNADLRRGKPTNHKV 165
BLAST of CX290888 vs. ExPASy Swiss-Prot
Match: GGPP2_ARATH (Geranylgeranyl pyrophosphate synthetase 2 OS=Arabidopsis thaliana GN=GGPP2 PE=2 SV=2) HSP 1 Score: 158.688 bits (400), Expect = 1.786e-38 Identity = 70/103 (67.96%), Postives = 89/103 (86.41%), Query Frame = 2 Query: 251 TFDFKSYMIQKASTVNQALDAAVSLKDPVKIHESMRYSLLAGGKRVRPVLCLAACDLVGGHESMAMPAACSIEMIHTMSLIHDDLPCMDNDPLRRGKPTNHTI 559 TF+F YM+ KA +VN+AL+ A+ + +P+KIHE+MRY++LA GKRVRP+LCLA+C+LVGG E+ AMPAAC++EMIHTMSLI DDLPCMDND LRRGKPT H + Sbjct: 82 TFEFDPYMMSKAESVNKALEEAIPVGEPLKIHEAMRYAILAAGKRVRPILCLASCELVGGQENAAMPAACAVEMIHTMSLIKDDLPCMDNDDLRRGKPTTHKV 184
BLAST of CX290888 vs. ExPASy Swiss-Prot
Match: GGPP6_ARATH (Geranylgeranyl pyrophosphate synthetase 6, mitochondrial OS=Arabidopsis thaliana GN=GGPP6 PE=2 SV=2) HSP 1 Score: 140.198 bits (352), Expect = 6.575e-33 Identity = 74/138 (53.62%), Postives = 97/138 (70.29%), Query Frame = 2 Query: 185 RPRRPVSISAVQTLEEN-----PAPSPTFDFKSYMIQKASTVNQALDAA-------VSLKDPV-KIHESMRYSLLAGGKRVRPVLCLAACDLVGGHESMAMPAACSIEMIHTMSLIHDDLPCMDNDPLRRGKPTNHTI 559 RPR + +SA++ + + S +F SYM KA ++N+ALD + V L +PV ++H++MRY+LL GGKRVRP+LCL AC+LVGG ES AMPAAC++EMIH SLI DDLPCMD+D LRRGKPTNH + Sbjct: 2 RPRYSLILSAMRLIRPSNRRLSSIASSDSEFISYMKNKAKSINKALDNSIPLCNNFVPLWEPVLEVHKAMRYTLLPGGKRVRPMLCLVACELVGGQESTAMPAACAVEMIHAASLILDDLPCMDDDSLRRGKPTNHKV 139
BLAST of CX290888 vs. ExPASy Swiss-Prot
Match: GGR_ARATH (Geranylgeranyl pyrophosphate synthase-related protein, chloroplastic OS=Arabidopsis thaliana GN=GGR PE=2 SV=2) HSP 1 Score: 135.961 bits (341), Expect = 1.240e-31 Identity = 65/140 (46.43%), Postives = 93/140 (66.43%), Query Frame = 2 Query: 161 LPVSLASQRPRRP------VSISAVQTLEENPAPSPTFDFKSYMIQKASTVNQALDAAVSLKDPVKIHESMRYSLLA-GGKRVRPVLCLAACDLVGGHESMAMPAACSIEMIHTMSLIHDDLPCMDNDPLRRGKPTNHTI 559 +P+S P +P +S +A+++ + S FD ++Y + +NQ LD A+ +K P I+E+MRYS+LA G KR PV+C+AAC+L GG A P AC++EM+H SLIHDDLPCMD+DP+RRGKP+NHT+ Sbjct: 8 IPLSSFCSLPEKPHTLPMKLSPAAIRSSSSSAPGSLNFDLRTYWTTLITEINQKLDEAIPVKHPAGIYEAMRYSVLAQGAKRAPPVMCVAACELFGGDRLAAFPTACALEMVHAASLIHDDLPCMDDDPVRRGKPSNHTV 147 The following BLAST results are available for this feature:
BLAST of CX290888 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 27
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >CX290888 ID=CX290888; Name=CX290888; organism=Citrus clementina; type=EST; length=559bpback to top |