CX290888

Overview
NameCX290888
Unique NameCX290888
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length559
Libraries
Library NameType
OF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10839 contig Ccv1_Contig10839:282..840. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX290888 vs. ExPASy Swiss-Prot
Match: GGPPS_HEVBR (Geranylgeranyl pyrophosphate synthetase, chloroplastic OS=Hevea brasiliensis GN=GGPS PE=1 SV=1)

HSP 1 Score: 224.557 bits (571), Expect = 2.651e-58
Identity = 111/178 (62.36%), Postives = 136/178 (76.40%), Query Frame = 2
Query:   56 MSCVNLAAWTQTCSIFNQASSRRSNKTQ---PFRTLKTLPVSLASQRPRRPVS-ISAVQTLEENPA------PSPTFDFKSYMIQKASTVNQALDAAVSLKDPVKIHESMRYSLLAGGKRVRPVLCLAACDLVGGHESMAMPAACSIEMIHTMSLIHDDLPCMDNDPLRRGKPTNHTI 559
            MS VNL +W  T  + NQA+  RS       PF  LK+L +S A ++  RP+S +SA+ T EE         P P+FDFKSYM+QK +++NQAL+AA+ L++P KIHESMRYSLLAGGKRVRP LCLAAC+LVGG++SMAMPAAC++EMIHTMSLIHDDLPCMDND LRRGKPTNH +
Sbjct:    1 MSSVNLGSWVHTSYVLNQATRSRSKSKSFSLPFNPLKSLAISFAYRKSERPISSVSAIITKEEETLQEEQNNPPPSFDFKSYMLQKGNSINQALEAAIPLQEPAKIHESMRYSLLAGGKRVRPALCLAACELVGGNDSMAMPAACAVEMIHTMSLIHDDLPCMDNDDLRRGKPTNHIV 178          
BLAST of CX290888 vs. ExPASy Swiss-Prot
Match: GGPPS_SINAL (Geranylgeranyl pyrophosphate synthetase, chloroplastic/chromoplastic OS=Sinapis alba GN=GGPS1 PE=1 SV=1)

HSP 1 Score: 188.348 bits (477), Expect = 2.105e-47
Identity = 95/148 (64.19%), Postives = 117/148 (79.05%), Query Frame = 2
Query:  122 RSNKTQPFRTLKTLPVSLASQRPRRPVSISAVQTLEEN--PAPSPTFDFKSYMIQKASTVNQALDAAVSLKDPVKIHESMRYSLLAGGKRVRPVLCLAACDLVGGHESMAMPAACSIEMIHTMSLIHDDLPCMDNDPLRRGKPTNHTI 559
            RS       TLK  P+SL  +R     S S++ T E+N   + S +FDF SY+I+KA +VN+ALD+AV L++P+KIHE+MRYSLLAGGKRVRPVLC+AAC+LVGG ES+AMPA C++EMIHTMSLIHDDLPCMDND LRRGKPTNH +
Sbjct:   26 RSRSPPSLITLK--PISLTPKRTVSSSSSSSLITKEDNNLKSSSSSFDFMSYIIRKADSVNKALDSAVPLREPLKIHEAMRYSLLAGGKRVRPVLCIAACELVGGEESLAMPARCAVEMIHTMSLIHDDLPCMDNDDLRRGKPTNHKV 171          
BLAST of CX290888 vs. ExPASy Swiss-Prot
Match: GGPP1_ARATH (Geranylgeranyl pyrophosphate synthetase 1, chloroplastic OS=Arabidopsis thaliana GN=GGPS1 PE=2 SV=2)

HSP 1 Score: 182.185 bits (461), Expect = 1.509e-45
Identity = 92/139 (66.19%), Postives = 110/139 (79.14%), Query Frame = 2
Query:  158 TLPVSLASQRP---RRPVSISAVQTLEENPAPSP--TFDFKSYMIQKASTVNQALDAAVSLKDPVKIHESMRYSLLAGGKRVRPVLCLAACDLVGGHESMAMPAACSIEMIHTMSLIHDDLPCMDNDPLRRGKPTNHTI 559
            T P+S  S+R       +  S+V T E+N   S   +FDF SY+I KA  VN+ALD+AV L++P+KIHE+MRYSLLAGGKRVRPVLC+AAC+LVGG ES AMPAAC++EMIHTMSLIHDDLPCMDND LRRGKPTNH +
Sbjct:   37 TKPISFRSKRTVSSSSSIVSSSVVTKEDNLRQSEPSSFDFMSYIITKAELVNKALDSAVPLREPLKIHEAMRYSLLAGGKRVRPVLCIAACELVGGEESTAMPAACAVEMIHTMSLIHDDLPCMDNDDLRRGKPTNHKV 175          
BLAST of CX290888 vs. ExPASy Swiss-Prot
Match: GGPPS_CAPAN (Geranylgeranyl pyrophosphate synthetase, chloroplastic OS=Capsicum annuum GN=GGPS1 PE=3 SV=1)

HSP 1 Score: 179.489 bits (454), Expect = 9.780e-45
Identity = 97/179 (54.19%), Postives = 125/179 (69.83%), Query Frame = 2
Query:   47 LTKMSCVNLAAWTQTCSIFNQASSRRSNK---TQPFRTLKTLPVSLASQRPRRPVSISAVQTLEENPA-----PSPTFDFKSYMIQKASTVNQALDAAVSLKDPVKIHESMRYSLLAGGKRVRPVLCLAACDLVGGHESMAMPAACSIEMIHTMSLIHDDLPCMDNDPLRRGKPTNHTI 559
            +  M+ V+L A  Q C +FNQ  S +S       P +  K  P  L  +RP  P+++SA+ T +E+           F+FK Y+ +KA +VN+ALD A+ +K+P  IHE+MRYSLLAGGKRVRP+LCLAAC+LVGG++  AM AAC++EMIHTMSLIHDDLPCMDND LRRGKPTNH I
Sbjct:    1 MRSMNLVDLWA-QQACLVFNQTLSYKSFNGFMKIPLKNSKINP-KLNKKRPFSPLTVSAIATTKEDERIEAAQTEEPFNFKIYVTEKAISVNKALDEAIIVKEPHVIHEAMRYSLLAGGKRVRPMLCLAACELVGGNQENAMAAACAVEMIHTMSLIHDDLPCMDNDDLRRGKPTNHKI 177          
BLAST of CX290888 vs. ExPASy Swiss-Prot
Match: GGPPS_CATRO (Geranylgeranyl pyrophosphate synthetase, chloroplastic OS=Catharanthus roseus GN=GGPS1 PE=3 SV=1)

HSP 1 Score: 177.178 bits (448), Expect = 4.854e-44
Identity = 96/166 (57.83%), Postives = 122/166 (73.49%), Query Frame = 2
Query:  122 RSNKTQPFRTLKTLPVSL-ASQRPRRPV------SISAV----QTLEENPAPSP---------TFDFKSYMIQKASTVNQALDAAVSLKDPVKIHESMRYSLLAGGKRVRPVLCLAACDLVGGHESMAMPAACSIEMIHTMSLIHDDLPCMDNDPLRRGKPTNHTI 559
            RSN   P +    LP+S   S   R+P+      SISA+    QT EE+ + S          +FDFK+YMI KA++VN+AL+ AV +++P+KIHESMRYSLLAGGKRVRP+LC+AAC+L GG ES+AMP+AC++EMIHTMSL+HDDLPCMDND LRRGKPTNH +
Sbjct:    2 RSNLCHPLKN--QLPISFFLSGTIRKPIFSCSRLSISAIITKEQTQEESESKSKKEVAFSSSSSFDFKAYMIGKANSVNKALEDAVLVREPLKIHESMRYSLLAGGKRVRPMLCIAACELFGGTESVAMPSACAVEMIHTMSLMHDDLPCMDNDDLRRGKPTNHKV 165          
BLAST of CX290888 vs. ExPASy Swiss-Prot
Match: GGPP4_ARATH (Geranylgeranyl pyrophosphate synthetase 4 OS=Arabidopsis thaliana GN=GGPP4 PE=2 SV=1)

HSP 1 Score: 163.696 bits (413), Expect = 5.553e-40
Identity = 78/150 (52.00%), Postives = 108/150 (72.00%), Query Frame = 2
Query:  110 ASSRRSNKTQPFRTLKTLPVSLASQRPRRPVSISAVQTLEENPAPSPTFDFKSYMIQKASTVNQALDAAVSLKDPVKIHESMRYSLLAGGKRVRPVLCLAACDLVGGHESMAMPAACSIEMIHTMSLIHDDLPCMDNDPLRRGKPTNHTI 559
            A++RR  +         +  ++ +++  R    S+++ + E      +FDFK YMI KA T+N+ALD A+ L +P+ IH++MRY++LAGGKRVRP+LCLAAC+LVGG E +A+ AAC++EMIHTMSLI DDLPCMDND LRRGKPT H +
Sbjct:   31 ANTRRLIRLLHIPIKSPVAAAIFARKDTREFLDSSIKLVNEEDDFGFSFDFKPYMISKAETINRALDEAIPLIEPLNIHKAMRYAILAGGKRVRPILCLAACELVGGEERLAIQAACAVEMIHTMSLIKDDLPCMDNDDLRRGKPTTHKV 180          
BLAST of CX290888 vs. ExPASy Swiss-Prot
Match: GGPP3_ARATH (Geranylgeranyl pyrophosphate synthetase 3, chloroplastic OS=Arabidopsis thaliana GN=GGPP3 PE=2 SV=1)

HSP 1 Score: 162.155 bits (409), Expect = 1.616e-39
Identity = 84/159 (52.83%), Postives = 109/159 (68.55%), Query Frame = 2
Query:   95 SIFNQASSRRSNKTQPFRTLKTL----PVSLASQRPRRPVSISAVQTLEENPAPSPTFDFKSYMIQKASTVNQALDAAVSLKDPVKIHESMRYSLLAGGKRVRPVLCLAACDLVGGHESMAMPAACSIEMIHTMSLIHDDLPCMDNDPLRRGKPTNHTI 559
            S+F Q+  RR N     ++LK      P S  + +  R +     +  + N A    FDFK YMI+KA +VN ALD +V L++P+ + E++RYSLLAGGKRVRP+LC+A C+LVGG E+ AM AAC++EMIHT SLIHDDLPCMDN  LRRGKPTNH +
Sbjct:   11 SLFIQSRGRRDNSISSVKSLKKRTGLSPSSALTSQGGRDMIPPEGKCNDHNSA----FDFKLYMIRKAESVNAALDVSVPLREPLTVQEAVRYSLLAGGKRVRPLLCIAVCELVGGDEATAMSAACAVEMIHTSSLIHDDLPCMDNADLRRGKPTNHKV 165          
BLAST of CX290888 vs. ExPASy Swiss-Prot
Match: GGPP2_ARATH (Geranylgeranyl pyrophosphate synthetase 2 OS=Arabidopsis thaliana GN=GGPP2 PE=2 SV=2)

HSP 1 Score: 158.688 bits (400), Expect = 1.786e-38
Identity = 70/103 (67.96%), Postives = 89/103 (86.41%), Query Frame = 2
Query:  251 TFDFKSYMIQKASTVNQALDAAVSLKDPVKIHESMRYSLLAGGKRVRPVLCLAACDLVGGHESMAMPAACSIEMIHTMSLIHDDLPCMDNDPLRRGKPTNHTI 559
            TF+F  YM+ KA +VN+AL+ A+ + +P+KIHE+MRY++LA GKRVRP+LCLA+C+LVGG E+ AMPAAC++EMIHTMSLI DDLPCMDND LRRGKPT H +
Sbjct:   82 TFEFDPYMMSKAESVNKALEEAIPVGEPLKIHEAMRYAILAAGKRVRPILCLASCELVGGQENAAMPAACAVEMIHTMSLIKDDLPCMDNDDLRRGKPTTHKV 184          
BLAST of CX290888 vs. ExPASy Swiss-Prot
Match: GGPP6_ARATH (Geranylgeranyl pyrophosphate synthetase 6, mitochondrial OS=Arabidopsis thaliana GN=GGPP6 PE=2 SV=2)

HSP 1 Score: 140.198 bits (352), Expect = 6.575e-33
Identity = 74/138 (53.62%), Postives = 97/138 (70.29%), Query Frame = 2
Query:  185 RPRRPVSISAVQTLEEN-----PAPSPTFDFKSYMIQKASTVNQALDAA-------VSLKDPV-KIHESMRYSLLAGGKRVRPVLCLAACDLVGGHESMAMPAACSIEMIHTMSLIHDDLPCMDNDPLRRGKPTNHTI 559
            RPR  + +SA++ +  +        S   +F SYM  KA ++N+ALD +       V L +PV ++H++MRY+LL GGKRVRP+LCL AC+LVGG ES AMPAAC++EMIH  SLI DDLPCMD+D LRRGKPTNH +
Sbjct:    2 RPRYSLILSAMRLIRPSNRRLSSIASSDSEFISYMKNKAKSINKALDNSIPLCNNFVPLWEPVLEVHKAMRYTLLPGGKRVRPMLCLVACELVGGQESTAMPAACAVEMIHAASLILDDLPCMDDDSLRRGKPTNHKV 139          
BLAST of CX290888 vs. ExPASy Swiss-Prot
Match: GGR_ARATH (Geranylgeranyl pyrophosphate synthase-related protein, chloroplastic OS=Arabidopsis thaliana GN=GGR PE=2 SV=2)

HSP 1 Score: 135.961 bits (341), Expect = 1.240e-31
Identity = 65/140 (46.43%), Postives = 93/140 (66.43%), Query Frame = 2
Query:  161 LPVSLASQRPRRP------VSISAVQTLEENPAPSPTFDFKSYMIQKASTVNQALDAAVSLKDPVKIHESMRYSLLA-GGKRVRPVLCLAACDLVGGHESMAMPAACSIEMIHTMSLIHDDLPCMDNDPLRRGKPTNHTI 559
            +P+S     P +P      +S +A+++   +   S  FD ++Y     + +NQ LD A+ +K P  I+E+MRYS+LA G KR  PV+C+AAC+L GG    A P AC++EM+H  SLIHDDLPCMD+DP+RRGKP+NHT+
Sbjct:    8 IPLSSFCSLPEKPHTLPMKLSPAAIRSSSSSAPGSLNFDLRTYWTTLITEINQKLDEAIPVKHPAGIYEAMRYSVLAQGAKRAPPVMCVAACELFGGDRLAAFPTACALEMVHAASLIHDDLPCMDDDPVRRGKPSNHTV 147          
The following BLAST results are available for this feature:
BLAST of CX290888 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 27
Match NameE-valueIdentityDescription
GGPPS_HEVBR2.651e-5862.36Geranylgeranyl pyrophosphate synthetase, chloropla... [more]
GGPPS_SINAL2.105e-4764.19Geranylgeranyl pyrophosphate synthetase, chloropla... [more]
GGPP1_ARATH1.509e-4566.19Geranylgeranyl pyrophosphate synthetase 1, chlorop... [more]
GGPPS_CAPAN9.780e-4554.19Geranylgeranyl pyrophosphate synthetase, chloropla... [more]
GGPPS_CATRO4.854e-4457.83Geranylgeranyl pyrophosphate synthetase, chloropla... [more]
GGPP4_ARATH5.553e-4052.00Geranylgeranyl pyrophosphate synthetase 4 OS=Arabi... [more]
GGPP3_ARATH1.616e-3952.83Geranylgeranyl pyrophosphate synthetase 3, chlorop... [more]
GGPP2_ARATH1.786e-3867.96Geranylgeranyl pyrophosphate synthetase 2 OS=Arabi... [more]
GGPP6_ARATH6.575e-3353.62Geranylgeranyl pyrophosphate synthetase 6, mitocho... [more]
GGR_ARATH1.240e-3146.43Geranylgeranyl pyrophosphate synthase-related prot... [more]

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Properties
Property NameValue
Genbank descriptionC03001D02Rv OF1 Citrus clementina cDNA clone C03001D02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX290888 ID=CX290888; Name=CX290888; organism=Citrus clementina; type=EST; length=559bp
CTCAGTTGTCAGTTCTCGCACCAGTGTAATCTCCATTTCTTCTTGCCTTA
CCAAAATGAGTTGCGTCAATCTTGCGGCATGGACTCAAACATGCTCAATC
TTTAACCAAGCTAGCAGTCGCAGATCTAACAAAACTCAGCCGTTCCGTAC
GCTTAAAACACTGCCCGTTTCCTTGGCTTCACAGAGACCAAGGCGCCCCG
TTTCGATCTCCGCAGTTCAAACTCTCGAGGAAAACCCCGCCCCAAGCCCC
ACTTTCGATTTCAAGTCCTACATGATCCAAAAAGCAAGTACCGTCAACCA
AGCCTTAGACGCCGCCGTTTCGCTCAAGGACCCCGTGAAGATCCACGAAT
CCATGCGTTACTCTTTACTGGCGGGCGGCAAGCGGGTGCGCCCCGTGCTC
TGCCTCGCCGCGTGTGACCTTGTTGGTGGCCACGAGTCCATGGCCATGCC
AGCTGCATGCTCTATCGAGATGATCCACACCATGTCCTTAATTCACGACG
ATTTGCCTTGCATGGATAACGACCCTCTTCGTCGAGGGAAGCCCACGAAC
CACACGATC
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