CX290894

Overview
NameCX290894
Unique NameCX290894
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length565
Libraries
Library NameType
OF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig13571 contig Ccv1_Contig13571:210..774. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX290894 vs. ExPASy Swiss-Prot
Match: HAT9_ARATH (Homeobox-leucine zipper protein HAT9 OS=Arabidopsis thaliana GN=HAT9 PE=2 SV=2)

HSP 1 Score: 112.849 bits (281), Expect = 1.154e-24
Identity = 84/177 (47.46%), Postives = 94/177 (53.11%), Query Frame = 1
Query:   40 MGFDDGCNTGLVLGLGFASAIETTPTNKANNINIVNHQQLQLPKGTCFEPSLSLGLPGEIYPEAATATTKKNSNSIDVNKGYEESAAAGVAEYQILNRQASPHSAVSNSFSSGRVVKRERDLXXXXXXXXXXXXXRASD--EDEDGVNARKKLRLTKEQSALLEESFKQHSTLNPKQ 564
            MGFDD CNTGLVLGLG        P+   NN N    Q          EPSL+L L G+               S+ V  G ++           L RQ S HS VS SFSSGRVVKRERD                SD  EDE+G++ARKKLRLTK+QSALLEESFK HSTLNPKQ
Sbjct:    1 MGFDDTCNTGLVLGLG--------PSPIPNNYNSTIRQSSVYK----LEPSLTLCLSGD--------------PSVTVVTGADQ-----------LCRQTSSHSGVS-SFSSGRVVKRERDGGEESPEEEEMTERVISDYHEDEEGISARKKLRLTKQQSALLEESFKDHSTLNPKQ 139          
BLAST of CX290894 vs. ExPASy Swiss-Prot
Match: HAT22_ARATH (Homeobox-leucine zipper protein HAT22 OS=Arabidopsis thaliana GN=HAT22 PE=1 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 2.406e-22
Identity = 80/187 (42.78%), Postives = 101/187 (54.01%), Query Frame = 1
Query:   40 MGFDDGCNTGLVLGLGFASAIETTPTNKANNI----NIVNHQQLQLPKGTCFEPSLSLGLPGEIYPEAATATTKKNSNSIDVNKGYEESAAAGVAEYQILNRQASPHSAVSNSFSSGRVVKRERDLXXXXXXXXXXXXX------RASDE--DEDGVNARKKLRLTKEQSALLEESFKQHSTLNPKQ 564
            MG DD CNTGLVLGLG    +  TP N  + I    + V+H+ ++L      +PSL+L L GE                      Y+    AG  +   + RQ S HS +S SFSSGRV KRER++                   R SD+  DE+GV+ARKKLRLTK+QSALLE++FK HSTLNPKQ
Sbjct:    1 MGLDDSCNTGLVLGLG----LSPTPNNYNHAIKKSSSTVDHRFIRL------DPSLTLSLSGE---------------------SYKIKTGAGAGDQ--ICRQTSSHSGIS-SFSSGRV-KREREISGGDGEEEAEETTERVVCSRVSDDHDDEEGVSARKKLRLTKQQSALLEDNFKLHSTLNPKQ 152          
BLAST of CX290894 vs. ExPASy Swiss-Prot
Match: HAT4_ARATH (Homeobox-leucine zipper protein HAT4 OS=Arabidopsis thaliana GN=HAT4 PE=1 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 5.028e-12
Identity = 56/166 (33.73%), Postives = 86/166 (51.81%), Query Frame = 1
Query:   67 GLVLGLGFASAIETTPTNKANNINIVNHQQLQLPKGTCFEPSLSLGLPGEIYPEAATATTKKNSNSIDVNKGYEESAAAGVAEYQILNRQASPHSAVSNSFSSGRVVKRERDLXXXXXXXXXXXXXRASDEDEDGVNARKKLRLTKEQSALLEESFKQHSTLNPKQ 564
            GL LGL F        +N + ++   +     L + + +  S +  +P     +++   T+     IDVN+    +A  G  +  +    +SP+S VS+S  +G+  +RE D              R   +DEDG N+RKKLRL+K+QSA+LEE+FK HSTLNPKQ
Sbjct:    9 GLSLGLNFPKKQINLKSNPSVSVT-PSSSSFGLFRRSSWNESFTSSVPNS---DSSQKETRTFIRGIDVNRP-PSTAEYGDEDAGV----SSPNSTVSSS--TGKRSEREEDTDPQGS--------RGISDDEDGDNSRKKLRLSKDQSAILEETFKDHSTLNPKQ 155          
The following BLAST results are available for this feature:
BLAST of CX290894 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
HAT9_ARATH1.154e-2447.46Homeobox-leucine zipper protein HAT9 OS=Arabidopsi... [more]
HAT22_ARATH2.406e-2242.78Homeobox-leucine zipper protein HAT22 OS=Arabidops... [more]
HAT4_ARATH5.028e-1233.73Homeobox-leucine zipper protein HAT4 OS=Arabidopsi... [more]
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Properties
Property NameValue
Genbank descriptionC03001D08Rv OF1 Citrus clementina cDNA clone C03001D08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX290894 ID=CX290894; Name=CX290894; organism=Citrus clementina; type=EST; length=565bp
CCCGAGTGTTTCTCAAGACTCTCGAATCTCATATCTTAAATGGGTTTTGA
TGATGGGTGTAACACGGGCCTCGTGCTAGGGTTAGGTTTCGCATCAGCCA
TAGAAACTACTCCAACAAATAAGGCGAACAATATAAATATTGTCAACCAC
CAGCAGCTGCAGCTGCCTAAGGGTACATGTTTTGAGCCATCGCTTAGTCT
GGGCCTTCCTGGTGAGATTTACCCTGAGGCTGCTACTGCTACTACCAAAA
AGAATAGTAATAGTATTGATGTGAACAAAGGTTATGAGGAATCCGCAGCA
GCAGGCGTCGCCGAATATCAAATACTAAATCGTCAGGCTTCTCCTCACAG
TGCTGTTTCTAATTCCTTCTCTAGCGGTAGAGTCGTCAAGAGGGAGAGAG
ACCTTAGCAGTGAAGAGATAGAGGTTGAAAAAGTTATTTCCTCAAGAGCC
AGTGATGAAGATGAAGACGGTGTTAATGCCAGAAAGAAACTTAGGCTCAC
CAAAGAACAATCTGCTCTTCTTGAGGAAAGCTTCAAACAGCATAGCACTC
TCAATCCGAAGCAAA
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