CX290897

Overview
NameCX290897
Unique NameCX290897
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length511
Libraries
Library NameType
OF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX290897_ssr102 microsatellite CX290897_ssr102:102..116. BLAST: Citrus ESTs to Prunus persica proteins V1
CX290897_ssr148 microsatellite CX290897_ssr148:148..165. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig11566 contig Ccv1_Contig11566:59..569. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX290897 vs. ExPASy Swiss-Prot
Match: AL2B7_ARATH (Aldehyde dehydrogenase family 2 member B7, mitochondrial OS=Arabidopsis thaliana GN=ALDH2B7 PE=2 SV=2)

HSP 1 Score: 213.001 bits (541), Expect = 6.328e-55
Identity = 110/169 (65.09%), Postives = 129/169 (76.33%), Query Frame = 3
Query:    6 MAARRIPLLLSRSFTSSSPTLFS-RGRDSSLCRXXXXXXXXXXXXXXXXXXXXXEDPITPPVKVDYTQLLINGQFVDSASGKTFPTLDPRTGDVITHVAEGEAEDVNRAVSAARKAFDEGPWPRMTAYERSKIILRFADLLERHNDEIAALETWDNGKPFEQSAQTEAP 509
            MA+RR+  LLSRSF SSS ++FS RG +    R                     E+ ITPPVKV++TQLLI G+FVD+ SGKTFPTLDPR G+VI  V+EG+AEDVNRAV+AARKAFDEGPWP+MTAYERSKI+ RFADL+E+HNDEIAALETWDNGKP+EQSAQ E P
Sbjct:    1 MASRRVSSLLSRSFMSSSRSIFSLRGMNRGAQRYSNLAAAV-------------ENTITPPVKVEHTQLLIGGRFVDAVSGKTFPTLDPRNGEVIAQVSEGDAEDVNRAVAAARKAFDEGPWPKMTAYERSKILFRFADLIEKHNDEIAALETWDNGKPYEQSAQIEVP 156          
BLAST of CX290897 vs. ExPASy Swiss-Prot
Match: AL2B4_ARATH (Aldehyde dehydrogenase family 2 member B4, mitochondrial OS=Arabidopsis thaliana GN=ALDH2B4 PE=1 SV=1)

HSP 1 Score: 203.371 bits (516), Expect = 5.014e-52
Identity = 103/169 (60.95%), Postives = 127/169 (75.15%), Query Frame = 3
Query:    6 MAARRIPLLLSRSFTSSSPTLF-SRGRDSSLCRXXXXXXXXXXXXXXXXXXXXXEDPITPPVKVDYTQLLINGQFVDSASGKTFPTLDPRTGDVITHVAEGEAEDVNRAVSAARKAFDEGPWPRMTAYERSKIILRFADLLERHNDEIAALETWDNGKPFEQSAQTEAP 509
            MAARR+  LLSRSF++SSP LF S+GR+                          E+ I P V+V +TQLLING FVDSASGKTFPTLDPRTG+VI HVAEG+AED+NRAV AAR AFDEGPWP+M+AYERS+++LRFADL+E+H++E+A+LETWDNGKP++QS   E P
Sbjct:    1 MAARRVSSLLSRSFSASSPLLFRSQGRNC---------YNGGILRRFGTSSAAAEEIINPSVQVSHTQLLINGNFVDSASGKTFPTLDPRTGEVIAHVAEGDAEDINRAVKAARTAFDEGPWPKMSAYERSRVLLRFADLVEKHSEELASLETWDNGKPYQQSLTAEIP 160          
BLAST of CX290897 vs. ExPASy Swiss-Prot
Match: AL2C4_ARATH (Aldehyde dehydrogenase family 2 member C4 OS=Arabidopsis thaliana GN=ALDH2C4 PE=1 SV=2)

HSP 1 Score: 130.183 bits (326), Expect = 5.394e-30
Identity = 59/107 (55.14%), Postives = 82/107 (76.64%), Query Frame = 3
Query:  189 KVDYTQLLINGQFVDSASGKTFPTLDPRTGDVITHVAEGEAEDVNRAVSAARKAFDEGPWPRMTAYERSKIILRFADLLERHNDEIAALETWDNGKPFEQSAQTEAP 509
            ++ +T+L INGQF+D+ASGKTF T+DPR G+VI  +AEG+ EDV+ AV+AAR AFD GPWPRMT +ER+K+I +FADL+E + +E+A L+  D GK F+     + P
Sbjct:   16 EIKFTKLFINGQFIDAASGKTFETIDPRNGEVIATIAEGDKEDVDLAVNAARYAFDHGPWPRMTGFERAKLINKFADLIEENIEELAKLDAVDGGKLFQLGKYADIP 122          
BLAST of CX290897 vs. ExPASy Swiss-Prot
Match: ALDH2_BOVIN (Aldehyde dehydrogenase, mitochondrial OS=Bos taurus GN=ALDH2 PE=1 SV=2)

HSP 1 Score: 112.464 bits (280), Expect = 1.164e-24
Identity = 57/99 (57.58%), Postives = 72/99 (72.73%), Query Frame = 3
Query:  189 KVDYTQLLINGQFVDSASGKTFPTLDPRTGDVITHVAEGEAEDVNRAVSAARKAFDEG-PWPRMTAYERSKIILRFADLLERHNDEIAALETWDNGKPF 482
            +V Y Q+ IN ++ D+ S KTFPT++P TGDVI HVAEG+  DV+RAV AAR AF  G PW RM A ER +++ R ADL+ER    +AALET DNGKP+
Sbjct:   36 EVLYNQIFINNEWHDAVSKKTFPTVNPSTGDVICHVAEGDKADVDRAVKAARAAFQLGSPWRRMDASERGRLLNRLADLIERDRTYLAALETLDNGKPY 134          
BLAST of CX290897 vs. ExPASy Swiss-Prot
Match: ALDH2_PIG (Aldehyde dehydrogenase, mitochondrial OS=Sus scrofa GN=ALDH2 PE=2 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 1.520e-24
Identity = 55/99 (55.56%), Postives = 73/99 (73.74%), Query Frame = 3
Query:  189 KVDYTQLLINGQFVDSASGKTFPTLDPRTGDVITHVAEGEAEDVNRAVSAARKAFDEG-PWPRMTAYERSKIILRFADLLERHNDEIAALETWDNGKPF 482
            ++ Y Q+ IN ++ D+ S KTFPT++P TGDVI HVAEG+ EDV+RAV AAR AF  G PW R+ A +R +++ R ADL+ER    +AALET DNGKP+
Sbjct:   37 EIFYNQIFINNEWHDAISKKTFPTVNPSTGDVICHVAEGDKEDVDRAVEAARAAFQLGSPWRRLDASDRGRLLNRLADLIERDRTYLAALETLDNGKPY 135          
BLAST of CX290897 vs. ExPASy Swiss-Prot
Match: AL1B1_RAT (Aldehyde dehydrogenase X, mitochondrial OS=Rattus norvegicus GN=Aldh1b1 PE=1 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 1.520e-24
Identity = 59/109 (54.13%), Postives = 79/109 (72.48%), Query Frame = 3
Query:  168 DPITPPVKVDYTQLLINGQFVDSASGKTFPTLDPRTGDVITHVAEGEAEDVNRAVSAARKAFDEG-PWPRMTAYERSKIILRFADLLERHNDEIAALETWDNGKPFEQS 491
            +PI  P ++ Y QL IN ++ D+ S KTFPT++P TG+VI HVAEG+  DV+ AV AAR+AF  G PW RM A ER +++ R ADL+ER    +A+LET DNGKPF++S
Sbjct:   29 NPIPNP-EIRYNQLFINNEWHDAVSKKTFPTVNPTTGEVIGHVAEGDRADVDLAVRAAREAFRLGSPWRRMDASERGRLLNRLADLVERDRVYLASLETLDNGKPFQES 136          
BLAST of CX290897 vs. ExPASy Swiss-Prot
Match: AL1B1_HUMAN (Aldehyde dehydrogenase X, mitochondrial OS=Homo sapiens GN=ALDH1B1 PE=1 SV=2)

HSP 1 Score: 112.079 bits (279), Expect = 1.520e-24
Identity = 59/108 (54.63%), Postives = 77/108 (71.30%), Query Frame = 3
Query:  171 PITPPVKVDYTQLLINGQFVDSASGKTFPTLDPRTGDVITHVAEGEAEDVNRAVSAARKAFDEG-PWPRMTAYERSKIILRFADLLERHNDEIAALETWDNGKPFEQS 491
            PI  P  + Y QL IN ++ D+ S KTFPT++P TG+VI HVAEG+  DV+RAV AAR+AF  G PW RM A ER +++   ADL+ER    +A+LET DNGKPF++S
Sbjct:   28 PILNP-DIPYNQLFINNEWQDAVSKKTFPTVNPTTGEVIGHVAEGDRADVDRAVKAAREAFRLGSPWRRMDASERGRLLNLLADLVERDRVYLASLETLDNGKPFQES 134          
BLAST of CX290897 vs. ExPASy Swiss-Prot
Match: AL1B1_PONAB (Aldehyde dehydrogenase X, mitochondrial OS=Pongo abelii GN=ALDH1B1 PE=2 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 1.985e-24
Identity = 59/108 (54.63%), Postives = 77/108 (71.30%), Query Frame = 3
Query:  171 PITPPVKVDYTQLLINGQFVDSASGKTFPTLDPRTGDVITHVAEGEAEDVNRAVSAARKAFDEG-PWPRMTAYERSKIILRFADLLERHNDEIAALETWDNGKPFEQS 491
            PI  P  + Y QL IN ++ D+ S KTFPT++P TG+VI HVAEG+  DV+RAV AAR+AF  G PW RM A ER +++   ADL+ER    +A+LET DNGKPF++S
Sbjct:   28 PILNP-DIPYNQLFINNEWQDAVSKKTFPTVNPTTGEVIGHVAEGDRADVDRAVKAAREAFRLGSPWRRMDASERGRLLNCLADLVERDRVYLASLETLDNGKPFQES 134          
BLAST of CX290897 vs. ExPASy Swiss-Prot
Match: AL1B1_MOUSE (Aldehyde dehydrogenase X, mitochondrial OS=Mus musculus GN=Aldh1b1 PE=2 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 4.423e-24
Identity = 58/109 (53.21%), Postives = 79/109 (72.48%), Query Frame = 3
Query:  168 DPITPPVKVDYTQLLINGQFVDSASGKTFPTLDPRTGDVITHVAEGEAEDVNRAVSAARKAFDEG-PWPRMTAYERSKIILRFADLLERHNDEIAALETWDNGKPFEQS 491
            +PI  P ++ Y +L IN ++ D+ S KTFPT++P TG+VI HVAEG+  DV+ AV AAR+AF  G PW RM A ER +++ R ADL+ER    +A+LET DNGKPF++S
Sbjct:   29 NPIPNP-EICYNKLFINNEWHDAVSKKTFPTVNPTTGEVIGHVAEGDRADVDLAVKAAREAFRLGSPWRRMDASERGRLLNRLADLVERDRVYLASLETLDNGKPFQES 136          
BLAST of CX290897 vs. ExPASy Swiss-Prot
Match: ALDH2_HORSE (Aldehyde dehydrogenase, mitochondrial OS=Equus caballus GN=ALDH2 PE=1 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 4.890e-23
Identity = 54/99 (54.55%), Postives = 71/99 (71.72%), Query Frame = 3
Query:  189 KVDYTQLLINGQFVDSASGKTFPTLDPRTGDVITHVAEGEAEDVNRAVSAARKAFDEG-PWPRMTAYERSKIILRFADLLERHNDEIAALETWDNGKPF 482
            +V Y Q+ IN ++ D+ S KTFPT++P TG+VI  VA G+ EDV+RAV AAR AF  G PW RM A +R +++ R ADL+ER    +AALET DNGKP+
Sbjct:   16 EVFYNQIFINNEWHDAVSKKTFPTVNPSTGEVICQVAAGDKEDVDRAVKAARAAFQLGSPWRRMDASDRGRLLNRLADLIERDRTYLAALETLDNGKPY 114          
The following BLAST results are available for this feature:
BLAST of CX290897 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 208
Match NameE-valueIdentityDescription
AL2B7_ARATH6.328e-5565.09Aldehyde dehydrogenase family 2 member B7, mitocho... [more]
AL2B4_ARATH5.014e-5260.95Aldehyde dehydrogenase family 2 member B4, mitocho... [more]
AL2C4_ARATH5.394e-3055.14Aldehyde dehydrogenase family 2 member C4 OS=Arabi... [more]
ALDH2_BOVIN1.164e-2457.58Aldehyde dehydrogenase, mitochondrial OS=Bos tauru... [more]
ALDH2_PIG1.520e-2455.56Aldehyde dehydrogenase, mitochondrial OS=Sus scrof... [more]
AL1B1_RAT1.520e-2454.13Aldehyde dehydrogenase X, mitochondrial OS=Rattus ... [more]
AL1B1_HUMAN1.520e-2454.63Aldehyde dehydrogenase X, mitochondrial OS=Homo sa... [more]
AL1B1_PONAB1.985e-2454.63Aldehyde dehydrogenase X, mitochondrial OS=Pongo a... [more]
AL1B1_MOUSE4.423e-2453.21Aldehyde dehydrogenase X, mitochondrial OS=Mus mus... [more]
ALDH2_HORSE4.890e-2354.55Aldehyde dehydrogenase, mitochondrial OS=Equus cab... [more]

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Properties
Property NameValue
Genbank descriptionC03001D11Rv OF1 Citrus clementina cDNA clone C03001D11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX290897 ID=CX290897; Name=CX290897; organism=Citrus clementina; type=EST; length=511bp
TTGTGATGGCTGCAAGAAGGATTCCGCTTTTGCTTTCACGTTCATTCACG
TCTTCTTCACCTACTCTGTTTTCAAGAGGGAGGGATTCTAGTTTGTGCAG
AGCTGCTGCTGCTGCTGCCGCCTCCTGCGGATACAGCACGGCTTCTTCTG
CTGCTGCTGCTGCTGAAGATCCAATTACTCCGCCTGTTAAAGTTGATTAT
ACTCAGCTTCTAATTAATGGACAATTTGTTGATTCTGCATCAGGCAAAAC
GTTTCCCACATTAGACCCCAGGACTGGTGATGTGATTACTCATGTAGCTG
AAGGTGAGGCTGAAGACGTCAACCGAGCAGTTTCTGCTGCTCGCAAGGCA
TTTGATGAAGGACCGTGGCCTAGGATGACTGCTTATGAAAGGTCAAAAAT
AATTTTGCGCTTCGCTGATTTGCTGGAAAGGCATAATGATGAAATTGCAG
CCCTTGAGACTTGGGATAACGGGAAGCCATTCGAGCAGTCTGCCCAGACT
GAAGCACCAAT
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