CX291016

Overview
NameCX291016
Unique NameCX291016
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length547
Libraries
Library NameType
OF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX291016 vs. ExPASy Swiss-Prot
Match: LUC7L_MOUSE (Putative RNA-binding protein Luc7-like 1 OS=Mus musculus GN=Luc7l PE=2 SV=2)

HSP 1 Score: 102.834 bits (255), Expect = 1.102e-21
Identity = 61/148 (41.22%), Postives = 85/148 (57.43%), Query Frame = 1
Query:   25 EMINEKLKKAEDLGEQGMVDEAQXXXXXXXXXXXXPARQEPTLDSSKYTAADVRITDQKLRVCDICGAFLSVYDSDRRLADHFGGKLHLGYMQIRDKL-------AELQEERNKKHKDRCDDRRSKER------SKDQDREPSRDREK 429
            E I + L KAE LG +G VDE+Q                E    +S   ++      QKLRVC++C A+L ++D+DRRLADHFGGKLHLG++QIR+KL       AE QE+RN+    R ++R  +ER      S+ +DR  SR R++
Sbjct:  131 EEIGKLLAKAEQLGAEGNVDESQKILMEVEKVRAKKKEAEEEYRNSMPASS---FQQQKLRVCEVCSAYLGLHDNDRRLADHFGGKLHLGFIQIREKLDQLRKTVAEKQEKRNQDRLRRREEREREERLGRRSGSRTRDRRRSRSRDR 275          
BLAST of CX291016 vs. ExPASy Swiss-Prot
Match: LUC7L_HUMAN (Putative RNA-binding protein Luc7-like 1 OS=Homo sapiens GN=LUC7L PE=1 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 1.102e-21
Identity = 61/148 (41.22%), Postives = 85/148 (57.43%), Query Frame = 1
Query:   25 EMINEKLKKAEDLGEQGMVDEAQXXXXXXXXXXXXPARQEPTLDSSKYTAADVRITDQKLRVCDICGAFLSVYDSDRRLADHFGGKLHLGYMQIRDKL-------AELQEERNKKHKDRCDDRRSKER------SKDQDREPSRDREK 429
            E I + L KAE LG +G VDE+Q                E    +S   ++      QKLRVC++C A+L ++D+DRRLADHFGGKLHLG++QIR+KL       AE QE+RN+    R ++R  +ER      S+ +DR  SR R++
Sbjct:  131 EEIGKLLAKAEQLGAEGNVDESQKILMEVEKVRAKKKEAEEEYRNSMPASS---FQQQKLRVCEVCSAYLGLHDNDRRLADHFGGKLHLGFIQIREKLDQLRKTVAEKQEKRNQDRLRRREEREREERLSRRSGSRTRDRRRSRSRDR 275          
BLAST of CX291016 vs. ExPASy Swiss-Prot
Match: LC7L2_MOUSE (Putative RNA-binding protein Luc7-like 2 OS=Mus musculus GN=Luc7l2 PE=1 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 5.470e-21
Identity = 57/148 (38.51%), Postives = 83/148 (56.08%), Query Frame = 1
Query:   25 EMINEKLKKAEDLGEQGMVDEAQXXXXXXXXXXXXPARQEPTLDSSKYTAADVRITDQKLRVCDICGAFLSVYDSDRRLADHFGGKLHLGYMQIRDKLAEL-------QEERNKKHKDRCDDRRSKE-----RSKDQDREPSRDREKE 432
            E I + L K E LG +G V+E+Q                E    +S   ++      QKLRVC++C A+L ++D+DRRLADHFGGKLHLG+++IR+KL EL       QE+RN++   R ++R  +E     RS+   + P R R +E
Sbjct:  131 EEIGKLLAKVEQLGAEGNVEESQKVMDEVEKARAKKREAEEVYRNSMPASS---FQQQKLRVCEVCSAYLGLHDNDRRLADHFGGKLHLGFIEIREKLEELKRVVAEKQEKRNQERLKRREEREREEREKLRRSRSHSKNPKRSRSRE 275          
BLAST of CX291016 vs. ExPASy Swiss-Prot
Match: LC7L2_HUMAN (Putative RNA-binding protein Luc7-like 2 OS=Homo sapiens GN=LUC7L2 PE=1 SV=2)

HSP 1 Score: 100.523 bits (249), Expect = 5.470e-21
Identity = 57/148 (38.51%), Postives = 83/148 (56.08%), Query Frame = 1
Query:   25 EMINEKLKKAEDLGEQGMVDEAQXXXXXXXXXXXXPARQEPTLDSSKYTAADVRITDQKLRVCDICGAFLSVYDSDRRLADHFGGKLHLGYMQIRDKLAEL-------QEERNKKHKDRCDDRRSKE-----RSKDQDREPSRDREKE 432
            E I + L K E LG +G V+E+Q                E    +S   ++      QKLRVC++C A+L ++D+DRRLADHFGGKLHLG+++IR+KL EL       QE+RN++   R ++R  +E     RS+   + P R R +E
Sbjct:  131 EEIGKLLAKVEQLGAEGNVEESQKVMDEVEKARAKKREAEEVYRNSMPASS---FQQQKLRVCEVCSAYLGLHDNDRRLADHFGGKLHLGFIEIREKLEELKRVVAEKQEKRNQERLKRREEREREEREKLRRSRSHSKNPKRSRSRE 275          
BLAST of CX291016 vs. ExPASy Swiss-Prot
Match: LC7L3_PONAB (Luc7-like protein 3 OS=Pongo abelii GN=LUC7L3 PE=2 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 1.541e-15
Identity = 47/138 (34.06%), Postives = 78/138 (56.52%), Query Frame = 1
Query:   25 EMINEKLKKAEDLGEQGMVDEAQXXXXXXXXXXXXPARQEPTLDSSKYTAADVRITDQKLRVCDICGAFLSVYDSDRRLADHFGGKLHLGYMQIRDKLAELQEERNKK--HKDRCDDRRSKERSKDQDREPSRDREKE 432
            + I+  L++ E+LG +G V+EAQ               +   L S+  T       ++++ VC++CGAFL V D+  R+ DH  GK H+GY +I+  + EL+E+  K+    DR D+R  KE+ + ++RE  R+RE+E
Sbjct:  134 DKIDVLLQQIEELGSEGKVEEAQGMMKLVEQLK----EERELLRSTTSTIESFAAQEKQMEVCEVCGAFLIVGDAQSRVDDHLMGKQHMGYAKIKATVEELKEKLRKRTEEPDR-DERLKKEKQEREEREKERERERE 266          
BLAST of CX291016 vs. ExPASy Swiss-Prot
Match: LC7L3_MOUSE (Luc7-like protein 3 OS=Mus musculus GN=Luc7l3 PE=1 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 1.541e-15
Identity = 47/138 (34.06%), Postives = 78/138 (56.52%), Query Frame = 1
Query:   25 EMINEKLKKAEDLGEQGMVDEAQXXXXXXXXXXXXPARQEPTLDSSKYTAADVRITDQKLRVCDICGAFLSVYDSDRRLADHFGGKLHLGYMQIRDKLAELQEERNKK--HKDRCDDRRSKERSKDQDREPSRDREKE 432
            + I+  L++ E+LG +G V+EAQ               +   L S+  T       ++++ VC++CGAFL V D+  R+ DH  GK H+GY +I+  + EL+E+  K+    DR D+R  KE+ + ++RE  R+RE+E
Sbjct:  134 DKIDVLLQQIEELGSEGKVEEAQGMMKLVEQLK----EERELLRSTTSTIESFAAQEKQMEVCEVCGAFLIVGDAQSRVDDHLMGKQHMGYAKIKATVEELKEKLRKRTEEPDR-DERLKKEKQEREEREKERERERE 266          
BLAST of CX291016 vs. ExPASy Swiss-Prot
Match: LC7L3_HUMAN (Luc7-like protein 3 OS=Homo sapiens GN=LUC7L3 PE=1 SV=2)

HSP 1 Score: 82.4185 bits (202), Expect = 1.541e-15
Identity = 47/138 (34.06%), Postives = 78/138 (56.52%), Query Frame = 1
Query:   25 EMINEKLKKAEDLGEQGMVDEAQXXXXXXXXXXXXPARQEPTLDSSKYTAADVRITDQKLRVCDICGAFLSVYDSDRRLADHFGGKLHLGYMQIRDKLAELQEERNKK--HKDRCDDRRSKERSKDQDREPSRDREKE 432
            + I+  L++ E+LG +G V+EAQ               +   L S+  T       ++++ VC++CGAFL V D+  R+ DH  GK H+GY +I+  + EL+E+  K+    DR D+R  KE+ + ++RE  R+RE+E
Sbjct:  134 DKIDVLLQQIEELGSEGKVEEAQGMMKLVEQLK----EERELLRSTTSTIESFAAQEKQMEVCEVCGAFLIVGDAQSRVDDHLMGKQHMGYAKIKATVEELKEKLRKRTEEPDR-DERLKKEKQEREEREKERERERE 266          
BLAST of CX291016 vs. ExPASy Swiss-Prot
Match: LC7L3_BOVIN (Luc7-like protein 3 OS=Bos taurus GN=LUC7L3 PE=2 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 1.541e-15
Identity = 47/138 (34.06%), Postives = 78/138 (56.52%), Query Frame = 1
Query:   25 EMINEKLKKAEDLGEQGMVDEAQXXXXXXXXXXXXPARQEPTLDSSKYTAADVRITDQKLRVCDICGAFLSVYDSDRRLADHFGGKLHLGYMQIRDKLAELQEERNKK--HKDRCDDRRSKERSKDQDREPSRDREKE 432
            + I+  L++ E+LG +G V+EAQ               +   L S+  T       ++++ VC++CGAFL V D+  R+ DH  GK H+GY +I+  + EL+E+  K+    DR D+R  KE+ + ++RE  R+RE+E
Sbjct:  134 DKIDVLLQQIEELGSEGKVEEAQGMMKLVEQLK----EERELLRSTTSTIESFAAQEKQMEVCEVCGAFLIVGDAQSRVDDHLMGKQHMGYAKIKATVEELKEKLRKRTEEPDR-DERLKKEKQEREEREKERERERE 266          
BLAST of CX291016 vs. ExPASy Swiss-Prot
Match: LUC7_SCHPO (U1 snRNP-associated protein usp106 OS=Schizosaccharomyces pombe GN=usp106 PE=1 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 5.483e-13
Identity = 34/69 (49.28%), Postives = 48/69 (69.57%), Query Frame = 1
Query:  190 TDQKLRVCDICGAFLSVYDSDRRLADHFGGKLHLGYMQIRDKLAELQEERNKKHKDRCDDRRSKERSKD 396
            T QKL+VCDIC A+LS  D+DRRLADHF GK+HLGY  +R+   +L+ +   + K R  D++  E+ +D
Sbjct:  183 THQKLQVCDICSAYLSRLDNDRRLADHFSGKMHLGYAMLRNIARDLRAQLEDREKSR--DKKDGEKQRD 249          
BLAST of CX291016 vs. ExPASy Swiss-Prot
Match: YP68_CAEEL (Uncharacterized protein B0495.8 OS=Caenorhabditis elegans GN=B0495.8 PE=2 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 8.753e-11
Identity = 41/140 (29.29%), Postives = 70/140 (50.00%), Query Frame = 1
Query:   13 ARTQEMINEKLKKAEDLGEQGMVDEAQXXXXXXXXXXXXPARQEPTLDSSKYTAADVRITDQKLRVCDICGAFLSVYDSDRRLADHFGGKLHLGYMQIRD---KLAELQEERNKKHKDRCDDRRSKERSKDQDREPSRDR 423
            A  +E I + +   E LG +G ++E+                QE     ++   A       KLRVC+ CGA L++ D + R+ADH+ GK+H+G ++ R+   K+ E  +ER K+ +++   +R  +R +   R   RDR
Sbjct:  127 AEIEEKIAKNVDDIEKLGNEGKIEESMKLHKYVEELREKI--QEIEDSQTEVKTAGPGSNSAKLRVCEDCGAQLNITDHESRIADHYNGKMHIGMVETRETYLKMKETIDERRKEREEKLGSQRGYQRRESYGR---RDR 261          
The following BLAST results are available for this feature:
BLAST of CX291016 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 10
Match NameE-valueIdentityDescription
LUC7L_MOUSE1.102e-2141.22Putative RNA-binding protein Luc7-like 1 OS=Mus mu... [more]
LUC7L_HUMAN1.102e-2141.22Putative RNA-binding protein Luc7-like 1 OS=Homo s... [more]
LC7L2_MOUSE5.470e-2138.51Putative RNA-binding protein Luc7-like 2 OS=Mus mu... [more]
LC7L2_HUMAN5.470e-2138.51Putative RNA-binding protein Luc7-like 2 OS=Homo s... [more]
LC7L3_PONAB1.541e-1534.06Luc7-like protein 3 OS=Pongo abelii GN=LUC7L3 PE=2... [more]
LC7L3_MOUSE1.541e-1534.06Luc7-like protein 3 OS=Mus musculus GN=Luc7l3 PE=1... [more]
LC7L3_HUMAN1.541e-1534.06Luc7-like protein 3 OS=Homo sapiens GN=LUC7L3 PE=1... [more]
LC7L3_BOVIN1.541e-1534.06Luc7-like protein 3 OS=Bos taurus GN=LUC7L3 PE=2 S... [more]
LUC7_SCHPO5.483e-1349.28U1 snRNP-associated protein usp106 OS=Schizosaccha... [more]
YP68_CAEEL8.753e-1129.29Uncharacterized protein B0495.8 OS=Caenorhabditis ... [more]
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Properties
Property NameValue
Genbank descriptionC03002H12Rv OF1 Citrus clementina cDNA clone C03002H12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX291016 ID=CX291016; Name=CX291016; organism=Citrus clementina; type=EST; length=547bp
CCTGCACCAGATGCTCGTACTCAGGAAATGATAAATGAAAAATTGAAGAA
GGCGGAGGATCTTGGTGAGCAAGGAATGGTAGATGAAGCACAAAAAGCAT
TGGAAGAGGCTGAAGCACTTAAGAAGCTGCCTGCCAGACAAGAACCTACA
CTAGATTCCTCCAAATACACTGCTGCAGATGTGCGCATTACTGATCAGAA
GCTACGTGTGTGTGACATCTGTGGAGCTTTTTTAAGTGTTTATGACAGTG
ATCGTCGCTTAGCAGATCATTTTGGAGGGAAGCTTCATCTAGGCTACATG
CAGATCCGTGATAAATTAGCAGAGCTTCAGGAGGAGAGAAACAAGAAACA
CAAAGATCGCTGTGATGATAGAAGGTCGAAAGAACGAAGTAAGGATCAGG
ACAGAGAACCAAGCAGGGATCGTGAGAAGGAAGCAAGTCGGGATCGTGAT
CGAGGGGATAGTCGTGACCGCGGGAGGGATTATGATCGTAGTAGCCGAGA
TCGTGATAGGTACTATGATCGAGATCGCAGATATGATCGCGAGCGTG
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