CX291042

Overview
NameCX291042
Unique NameCX291042
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length413
Libraries
Library NameType
OF2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX291042 vs. ExPASy Swiss-Prot
Match: COL15_ARATH (Zinc finger protein CONSTANS-LIKE 15 OS=Arabidopsis thaliana GN=COL15 PE=2 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 1.360e-28
Identity = 55/83 (66.27%), Postives = 66/83 (79.52%), Query Frame = 2
Query:  164 SSMLALCDFCNSKLAVLYCTADSAKLCLFCDQQIHSANALSLRHLRSQICDNCRAEPVSVRCCTENLMLCQDCDWDSHYNSSV 412
            SS    CDFC  + AVL+C AD+AKLCL CDQQ+H+AN LS +H+RSQICDNC  EPVSVRC T+NL+LCQ+CDWD H + SV
Sbjct:    3 SSERVPCDFCGERTAVLFCRADTAKLCLPCDQQVHTANLLSRKHVRSQICDNCGNEPVSVRCFTDNLILCQECDWDVHGSCSV 85          
BLAST of CX291042 vs. ExPASy Swiss-Prot
Match: COL14_ARATH (Zinc finger protein CONSTANS-LIKE 14 OS=Arabidopsis thaliana GN=COL14 PE=2 SV=2)

HSP 1 Score: 121.324 bits (303), Expect = 1.504e-27
Identity = 51/76 (67.11%), Postives = 62/76 (81.58%), Query Frame = 2
Query:  182 CDFCNSKLAVLYCTADSAKLCLFCDQQIHSANALSLRHLRSQICDNCRAEPVSVRCCTENLMLCQDCDWDSHYNSS 409
            C+FC  + AVL+C AD+AKLCL CDQ +HSAN LS +H+RSQICDNC  EPVSVRC T+NL+LCQ+CDWD H + S
Sbjct:   12 CEFCGERTAVLFCRADTAKLCLPCDQHVHSANLLSRKHVRSQICDNCSKEPVSVRCFTDNLVLCQECDWDVHGSCS 87          
BLAST of CX291042 vs. ExPASy Swiss-Prot
Match: COL9_ARATH (Zinc finger protein CONSTANS-LIKE 9 OS=Arabidopsis thaliana GN=COL9 PE=2 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 1.902e-22
Identity = 40/77 (51.95%), Postives = 57/77 (74.03%), Query Frame = 2
Query:  179 LCDFCNSKLAVLYCTADSAKLCLFCDQQIHSANALSLRHLRSQICDNCRAEPVSVRCCTENLMLCQDCDWDSHYNSS 409
            +CDFC  + +++YC +D+A LCL CD+ +HSANALS RH R+ +C+ C A+P +VRC  E + LCQ+CDW  H NS+
Sbjct:    4 MCDFCGEQRSMVYCRSDAACLCLSCDRSVHSANALSKRHSRTLVCERCNAQPATVRCVEERVSLCQNCDWSGHNNSN 80          
BLAST of CX291042 vs. ExPASy Swiss-Prot
Match: COL13_ARATH (Zinc finger protein CONSTANS-LIKE 13 OS=Arabidopsis thaliana GN=COL13 PE=2 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 4.238e-22
Identity = 43/77 (55.84%), Postives = 56/77 (72.73%), Query Frame = 2
Query:  179 LCDFCNSKLAVLYCTADSAKLCLFCDQQIHSANALSLRHLRSQICDNCRAEPVSVRCCTENLMLCQDCDWDSHYNSS 409
            LCD+C+S +A++YC ADSAKLCL CD+Q+H AN L  +H RS +CD+C   P S+ C TE  +LCQ+CDW  H  SS
Sbjct:   12 LCDYCDSSVALVYCKADSAKLCLACDKQVHVANQLFAKHFRSLLCDSCNESPSSLFCETERSVLCQNCDWQHHTASS 88          
BLAST of CX291042 vs. ExPASy Swiss-Prot
Match: COL10_ARATH (Zinc finger protein CONSTANS-LIKE 10 OS=Arabidopsis thaliana GN=COL10 PE=1 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 9.441e-22
Identity = 39/73 (53.42%), Postives = 54/73 (73.97%), Query Frame = 2
Query:  179 LCDFCNSKLAVLYCTADSAKLCLFCDQQIHSANALSLRHLRSQICDNCRAEPVSVRCCTENLMLCQDCDWDSH 397
            +CDFC  + +++YC +D+A LCL CD+ +HSANALS RH R+ +C+ C A+P SVRC  E + LCQ+CDW  H
Sbjct:    4 MCDFCGEQRSMVYCRSDAACLCLSCDRNVHSANALSKRHSRTLVCERCNAQPASVRCSDERVSLCQNCDWSGH 76          
BLAST of CX291042 vs. ExPASy Swiss-Prot
Match: COL11_ARATH (Putative zinc finger protein CONSTANS-LIKE 11 OS=Arabidopsis thaliana GN=COL11 PE=2 SV=2)

HSP 1 Score: 97.8265 bits (242), Expect = 1.780e-20
Identity = 40/73 (54.79%), Postives = 51/73 (69.86%), Query Frame = 2
Query:  170 MLALCDFCNSKLAVLYCTADSAKLCLFCDQQIHSANALSLRHLRSQICDNCRAEPVSVRCCTENLMLCQDCDW 388
            M A CDFC ++ A++YC +DSAKLCL CD  +HSAN LS RH RS +C+ C  +P +V C  EN+ LCQ C W
Sbjct:    1 MEARCDFCGTEKALIYCKSDSAKLCLNCDVNVHSANPLSQRHTRSLLCEKCSLQPTAVHCMNENVSLCQGCQW 73          
BLAST of CX291042 vs. ExPASy Swiss-Prot
Match: COLX_ARATH (Putative zinc finger protein At1g68190 OS=Arabidopsis thaliana GN=At1g68190 PE=2 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 6.333e-18
Identity = 38/81 (46.91%), Postives = 54/81 (66.67%), Query Frame = 2
Query:  167 SMLALCDFCNSKLAVLYCTADSAKLCLFCDQQIHSANALSLRHLRSQICDNCRAEPVSVRCCTENLMLCQDCDWDSHYNSS 409
            +M  +C+FC +  AV+YC AD+A LCL CD ++HSAN+LS RHLR+ +CD+C+ +P  VRC    + LC  C+   H   S
Sbjct:    9 NMERVCEFCKAYRAVVYCIADTANLCLTCDAKVHSANSLSGRHLRTVLCDSCKNQPCVVRCFDHKMFLCHGCNDKFHGGGS 89          
BLAST of CX291042 vs. ExPASy Swiss-Prot
Match: COL12_ARATH (Zinc finger protein CONSTANS-LIKE 12 OS=Arabidopsis thaliana GN=COL12 PE=2 SV=2)

HSP 1 Score: 88.1965 bits (217), Expect = 1.411e-17
Identity = 35/69 (50.72%), Postives = 47/69 (68.12%), Query Frame = 2
Query:  182 CDFCNSKLAVLYCTADSAKLCLFCDQQIHSANALSLRHLRSQICDNCRAEPVSVRCCTENLMLCQDCDW 388
            CD C +  A++YC +D AKLCL CD  +HSAN LS RH+RS IC+ C ++P ++RC  E +  CQ C W
Sbjct:    5 CDHCATSQALIYCKSDLAKLCLNCDVHVHSANPLSHRHIRSLICEKCFSQPAAIRCLDEKVSYCQGCHW 73          
BLAST of CX291042 vs. ExPASy Swiss-Prot
Match: CONS_ARATH (Zinc finger protein CONSTANS OS=Arabidopsis thaliana GN=CO PE=1 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 1.907e-14
Identity = 31/72 (43.06%), Postives = 44/72 (61.11%), Query Frame = 2
Query:  182 CDFCNSKLAVLYCTADSAKLCLFCDQQIHSANALSLRHLRSQICDNCRAEPVSVRCCTENLMLCQDCDWDSH 397
            CD C S    +YC ADSA LC+ CD Q+HSAN ++ RH R ++C++C   P +  C  ++  LC  CD + H
Sbjct:   20 CDTCRSNACTVYCHADSAYLCMSCDAQVHSANRVASRHKRVRVCESCERAPAAFLCEADDASLCTACDSEVH 91          
BLAST of CX291042 vs. ExPASy Swiss-Prot
Match: COL4_ARATH (Zinc finger protein CONSTANS-LIKE 4 OS=Arabidopsis thaliana GN=COL4 PE=2 SV=2)

HSP 1 Score: 77.411 bits (189), Expect = 2.490e-14
Identity = 34/73 (46.58%), Postives = 42/73 (57.53%), Query Frame = 2
Query:  179 LCDFCNSKLAVLYCTADSAKLCLFCDQQIHSANALSLRHLRSQICDNCRAEPVSVRCCTENLMLCQDCDWDSH 397
            LCD C S  A LYC  D+A LCL CD ++H+AN L+ RH R  +C+ C   P  V C  +   LC  CD D H
Sbjct:    5 LCDSCKSATAALYCRPDAAFLCLSCDSKVHAANKLASRHARVWMCEVCEQAPAHVTCKADAAALCVTCDRDIH 77          
The following BLAST results are available for this feature:
BLAST of CX291042 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 15
Match NameE-valueIdentityDescription
COL15_ARATH1.360e-2866.27Zinc finger protein CONSTANS-LIKE 15 OS=Arabidopsi... [more]
COL14_ARATH1.504e-2767.11Zinc finger protein CONSTANS-LIKE 14 OS=Arabidopsi... [more]
COL9_ARATH1.902e-2251.95Zinc finger protein CONSTANS-LIKE 9 OS=Arabidopsis... [more]
COL13_ARATH4.238e-2255.84Zinc finger protein CONSTANS-LIKE 13 OS=Arabidopsi... [more]
COL10_ARATH9.441e-2253.42Zinc finger protein CONSTANS-LIKE 10 OS=Arabidopsi... [more]
COL11_ARATH1.780e-2054.79Putative zinc finger protein CONSTANS-LIKE 11 OS=A... [more]
COLX_ARATH6.333e-1846.91Putative zinc finger protein At1g68190 OS=Arabidop... [more]
COL12_ARATH1.411e-1750.72Zinc finger protein CONSTANS-LIKE 12 OS=Arabidopsi... [more]
CONS_ARATH1.907e-1443.06Zinc finger protein CONSTANS OS=Arabidopsis thalia... [more]
COL4_ARATH2.490e-1446.58Zinc finger protein CONSTANS-LIKE 4 OS=Arabidopsis... [more]

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Properties
Property NameValue
Genbank descriptionC03003C09SK OF2 Citrus clementina cDNA clone C03003C09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX291042 ID=CX291042; Name=CX291042; organism=Citrus clementina; type=EST; length=413bp
ACCTTGTGCTTTGCATCTGTTCTCTCACTCATTCTGACATGCCACTGCTT
TTGCTACTTGCACATTTACGCCATCATCATTCAGTAATTCACTTCAAGCT
TGTTGAAAAATCTATAGCAAGCCGGGAATATCAATGGAAGACAGTTTTAA
ATTGAGTCCGGGAAGCTCTATGTTGGCACTGTGTGATTTTTGCAACTCAA
AGCTGGCAGTTTTGTACTGTACAGCTGACTCTGCCAAGCTTTGCTTGTTC
TGTGATCAGCAAATTCACTCAGCTAATGCTTTGTCTCTCAGGCATCTTCG
TTCACAAATCTGTGACAACTGCAGGGCTGAACCGGTTTCGGTTCGTTGCT
GCACTGAAAATCTTATGCTCTGTCAAGACTGTGACTGGGACTCACATTAC
AATTCCTCTGTTT
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