CX291052

Overview
NameCX291052
Unique NameCX291052
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length538
Libraries
Library NameType
OF2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX291052_ssr8 microsatellite CX291052_ssr8:8..17. BLAST: Citrus ESTs to Prunus persica proteins V1
CX291052_ssr59 microsatellite CX291052_ssr59:59..68. BLAST: Citrus ESTs to Prunus persica proteins V1
CX291052_ssr116 microsatellite CX291052_ssr116:116..130. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of CX291052 vs. ExPASy Swiss-Prot
Match: VA726_ARATH (Putative vesicle-associated membrane protein 726 OS=Arabidopsis thaliana GN=VAMP726 PE=2 SV=2)

HSP 1 Score: 216.468 bits (550), Expect = 6.555e-56
Identity = 100/127 (78.74%), Postives = 111/127 (87.40%), Query Frame = 1
Query:  157 MSQKSLIYAFVARGNVVLAEYTEFSGNFNSIAYQCLQKLPASNNKFTYNCDAHTFNYLVDNGYTYCVVADESSGRQIPMAFLERVKDEFVSKYGGGKAATAPANGLNKEFGPKLKELMQYCVDHPEE 537
            M Q+SLIY+FVARG V+LAEYTEF GNF S+A QCLQKLP+SNNKFTYNCD HTFNYL DNG+TYCVV  ES+GRQIPMAFLERVK++F  +YGGGKA+TA AN LNKEFG KLKE MQYC DHPEE
Sbjct:    1 MGQQSLIYSFVARGTVILAEYTEFKGNFTSVAAQCLQKLPSSNNKFTYNCDGHTFNYLADNGFTYCVVVIESAGRQIPMAFLERVKEDFNKRYGGGKASTAKANSLNKEFGSKLKEHMQYCADHPEE 127          
BLAST of CX291052 vs. ExPASy Swiss-Prot
Match: VA722_ARATH (Vesicle-associated membrane protein 722 OS=Arabidopsis thaliana GN=VAMP722 PE=2 SV=2)

HSP 1 Score: 213.772 bits (543), Expect = 4.249e-55
Identity = 98/127 (77.17%), Postives = 114/127 (89.76%), Query Frame = 1
Query:  157 MSQKSLIYAFVARGNVVLAEYTEFSGNFNSIAYQCLQKLPASNNKFTYNCDAHTFNYLVDNGYTYCVVADESSGRQIPMAFLERVKDEFVSKYGGGKAATAPANGLNKEFGPKLKELMQYCVDHPEE 537
            M+Q+SLIY+FVARG V+L E+T+F GNF SIA QCLQKLP+SNNKFTYNCD HTFNYLV+NG+TYCVVA +S+GRQIPMAFLERVK++F  +YGGGKAATA AN LNKEFG KLKE MQYC+DHP+E
Sbjct:    1 MAQQSLIYSFVARGTVILVEFTDFKGNFTSIAAQCLQKLPSSNNKFTYNCDGHTFNYLVENGFTYCVVAVDSAGRQIPMAFLERVKEDFNKRYGGGKAATAQANSLNKEFGSKLKEHMQYCMDHPDE 127          
BLAST of CX291052 vs. ExPASy Swiss-Prot
Match: VA725_ARATH (Vesicle-associated membrane protein 725 OS=Arabidopsis thaliana GN=VAMP725 PE=2 SV=2)

HSP 1 Score: 211.846 bits (538), Expect = 1.614e-54
Identity = 97/127 (76.38%), Postives = 111/127 (87.40%), Query Frame = 1
Query:  157 MSQKSLIYAFVARGNVVLAEYTEFSGNFNSIAYQCLQKLPASNNKFTYNCDAHTFNYLVDNGYTYCVVADESSGRQIPMAFLERVKDEFVSKYGGGKAATAPANGLNKEFGPKLKELMQYCVDHPEE 537
            M Q++LIY+FVARG V+L EYTEF GNF ++A QCLQKLP+SNNKFTYNCD HTFNYLV+NG+TYCVVA ES GRQIPMAFLERVK++F  +YGGGKA TA AN LN+EFG KLKE MQYCVDHP+E
Sbjct:   66 MGQQNLIYSFVARGTVILVEYTEFKGNFTAVAAQCLQKLPSSNNKFTYNCDGHTFNYLVENGFTYCVVAVESVGRQIPMAFLERVKEDFNKRYGGGKATTAQANSLNREFGSKLKEHMQYCVDHPDE 192          
BLAST of CX291052 vs. ExPASy Swiss-Prot
Match: VA721_ARATH (Vesicle-associated membrane protein 721 OS=Arabidopsis thaliana GN=VAMP721 PE=2 SV=1)

HSP 1 Score: 210.69 bits (535), Expect = 3.597e-54
Identity = 96/127 (75.59%), Postives = 114/127 (89.76%), Query Frame = 1
Query:  157 MSQKSLIYAFVARGNVVLAEYTEFSGNFNSIAYQCLQKLPASNNKFTYNCDAHTFNYLVDNGYTYCVVADESSGRQIPMAFLERVKDEFVSKYGGGKAATAPANGLNKEFGPKLKELMQYCVDHPEE 537
            M+Q+SLIY+FVARG V+L E+T+F GNF SIA QCLQKLP+SNNKFTYNCD HTFNYLV++G+TYCVVA +S+GRQIPM+FLERVK++F  +YGGGKAATA AN LNKEFG KLKE MQYC+DHP+E
Sbjct:    1 MAQQSLIYSFVARGTVILVEFTDFKGNFTSIAAQCLQKLPSSNNKFTYNCDGHTFNYLVEDGFTYCVVAVDSAGRQIPMSFLERVKEDFNKRYGGGKAATAQANSLNKEFGSKLKEHMQYCMDHPDE 127          
BLAST of CX291052 vs. ExPASy Swiss-Prot
Match: VA723_ARATH (Vesicle-associated membrane protein 723 OS=Arabidopsis thaliana GN=VAMP723 PE=2 SV=1)

HSP 1 Score: 192.586 bits (488), Expect = 1.014e-48
Identity = 87/127 (68.50%), Postives = 107/127 (84.25%), Query Frame = 1
Query:  157 MSQKSLIYAFVARGNVVLAEYTEFSGNFNSIAYQCLQKLPASNNKFTYNCDAHTFNYLVDNGYTYCVVADESSGRQIPMAFLERVKDEFVSKYGGGKAATAPANGLNKEFGPKLKELMQYCVDHPEE 537
            M+Q+SL Y+F+ARG V+L E+T+F GNF S+A Q L+ LP+SNNKFTYNCD HTFN LV+NG+TYCVVA +S+GR+IPMAFLERVK++F  +YGG KAAT  AN LNKEFG  LKE MQYC+DHP+E
Sbjct:    1 MAQQSLFYSFIARGTVILVEFTDFKGNFTSVAAQYLENLPSSNNKFTYNCDGHTFNDLVENGFTYCVVAVDSAGREIPMAFLERVKEDFYKRYGGEKAATDQANSLNKEFGSNLKEHMQYCMDHPDE 127          
BLAST of CX291052 vs. ExPASy Swiss-Prot
Match: VA724_ARATH (Vesicle-associated membrane protein 724 OS=Arabidopsis thaliana GN=VAMP724 PE=2 SV=2)

HSP 1 Score: 182.57 bits (462), Expect = 1.049e-45
Identity = 88/128 (68.75%), Postives = 105/128 (82.03%), Query Frame = 1
Query:  157 MSQKSLIYAFVARGNVVLAEYTEFSGNFNSIAYQCLQKLPASNN-KFTYNCDAHTFNYLVDNGYTYCVVADESSGRQIPMAFLERVKDEFVSKYGGGKAATAPANGLNKEFGPKLKELMQYCVDHPEE 537
            M Q+S IY+FVARG ++LAEYTEF+GNF SIA QCLQKLP+S+N KFTYNCD HTFN+LV++GY YCVVA +S  +QI +AFLERVK +F  +YGGGKA+TA A  LNKEFGP +KE M Y VDH EE
Sbjct:    1 MGQESFIYSFVARGTMILAEYTEFTGNFPSIAAQCLQKLPSSSNSKFTYNCDHHTFNFLVEDGYAYCVVAKDSLSKQISIAFLERVKADFKKRYGGGKASTAIAKSLNKEFGPVMKEHMNYIVDHAEE 128          
BLAST of CX291052 vs. ExPASy Swiss-Prot
Match: VA727_ARATH (Vesicle-associated membrane protein 727 OS=Arabidopsis thaliana GN=VAMP727 PE=2 SV=1)

HSP 1 Score: 159.844 bits (403), Expect = 7.281e-39
Identity = 78/146 (53.42%), Postives = 101/146 (69.18%), Query Frame = 1
Query:  157 MSQKSLIYAFVARGNVVLAEYTEFSGNFNSIAYQCLQKLPASNNKFTYNCDAHTFNYLVDNGYTYCVVADESSGRQIPMAFLERVKDEFVSKYGGG-------------------KAATAPANGLNKEFGPKLKELMQYCVDHPEE 537
            MSQK LIY+FVA+G VVLAE+T +SGNF++IA QCLQKLP +++K+TY+CD HTFN+LVDNG+ + VVADES+GR +P  FLERVK++F  +Y                          + A  L++EFGP LKE MQYC+ HPEE
Sbjct:    1 MSQKGLIYSFVAKGTVVLAEHTPYSGNFSTIAVQCLQKLPTNSSKYTYSCDGHTFNFLVDNGFVFLVVADESTGRSVPFVFLERVKEDFKKRYEASIKNDERHPLADEDEDDDLFGDRFSVAYNLDREFGPILKEHMQYCMSHPEE 146          
BLAST of CX291052 vs. ExPASy Swiss-Prot
Match: VAM7B_DICDI (Vesicle-associated membrane protein 7B OS=Dictyostelium discoideum GN=vamp7B PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 1.291e-19
Identity = 50/115 (43.48%), Postives = 73/115 (63.48%), Query Frame = 1
Query:  172 LIYAFVARGNVVLAEYTEFSGNFNSIAYQCLQKLPASNNKFTYNCDAHTFNYLVDNGYTYCVVADESSGRQIPMAFLERVKDEFVSKYGGGKAATAPANGLNKEFGPKLKELMQY 516
            +IY+ VARG+ VLAE+T  +GNF +I  + L  +P ++ K +Y  + + F+YLV +  TY  +ADE  GR+IP  FL+ VK+ F S Y G K  TA A G+N +F   L+ LM +
Sbjct:    3 IIYSLVARGSSVLAEFTSTNGNFVTITRRILDLIPPNDTKMSYVYEKYIFHYLVSDTLTYLCMADEEFGRRIPFTFLDDVKNRFKSMY-GDKGKTAIAYGMNSDFSRTLENLMDH 116          
BLAST of CX291052 vs. ExPASy Swiss-Prot
Match: VA711_ARATH (Vesicle-associated membrane protein 711 OS=Arabidopsis thaliana GN=VAMP711 PE=2 SV=2)

HSP 1 Score: 85.5001 bits (210), Expect = 1.745e-16
Identity = 48/122 (39.34%), Postives = 74/122 (60.66%), Query Frame = 1
Query:  169 SLIYAFVARGNVVLAEYTEFSGNFNSIAYQCLQKLPASN-NKFTYNCDAHTFNYLVDNGYTYCVVADESSGRQIPMAFLERVKDEFVSKYGGGKAATAPANGLNKEFGPKLKELMQYCVDHP 531
            +++YA VARG VVL+E+T  S N ++IA Q L+K+P  N +  +Y+ D + F+    +G T   +A+E++GR+IP AFLE +   FV  YG     TA A  +N+EF   L + + Y  + P
Sbjct:    2 AILYALVARGTVVLSEFTATSTNASTIAKQILEKVPGDNDSNVSYSQDRYVFHVKRTDGLTVLCMAEETAGRRIPFAFLEDIHQRFVRTYGRA-VHTALAYAMNEEFSRVLSQQIDYYSNDP 122          
BLAST of CX291052 vs. ExPASy Swiss-Prot
Match: VA713_ARATH (Vesicle-associated membrane protein 713 OS=Arabidopsis thaliana GN=VAMP713 PE=2 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 1.477e-15
Identity = 47/123 (38.21%), Postives = 74/123 (60.16%), Query Frame = 1
Query:  169 SLIYAFVARGNVVLAEYTEFSGNFNSIAYQCLQKLPA--SNNKFTYNCDAHTFNYLVDNGYTYCVVADESSGRQIPMAFLERVKDEFVSKYGGGKAATAPANGLNKEFGPKLKELMQYCVDHP 531
            ++I+A VARG VVL+E++  S N +SI+ Q L+KLP   S++  +Y+ D + F+    +G T   +ADE++GR IP AFL+ +   FV  YG     +A A  +N EF   L + M++  + P
Sbjct:    2 AIIFALVARGTVVLSEFSATSTNASSISKQILEKLPGNDSDSHMSYSQDRYIFHVKRTDGLTVLCMADETAGRNIPFAFLDDIHQRFVKTYGRA-IHSAQAYSMNDEFSRVLSQQMEFYSNDP 123          
The following BLAST results are available for this feature:
BLAST of CX291052 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 18
Match NameE-valueIdentityDescription
VA726_ARATH6.555e-5678.74Putative vesicle-associated membrane protein 726 O... [more]
VA722_ARATH4.249e-5577.17Vesicle-associated membrane protein 722 OS=Arabido... [more]
VA725_ARATH1.614e-5476.38Vesicle-associated membrane protein 725 OS=Arabido... [more]
VA721_ARATH3.597e-5475.59Vesicle-associated membrane protein 721 OS=Arabido... [more]
VA723_ARATH1.014e-4868.50Vesicle-associated membrane protein 723 OS=Arabido... [more]
VA724_ARATH1.049e-4568.75Vesicle-associated membrane protein 724 OS=Arabido... [more]
VA727_ARATH7.281e-3953.42Vesicle-associated membrane protein 727 OS=Arabido... [more]
VAM7B_DICDI1.291e-1943.48Vesicle-associated membrane protein 7B OS=Dictyost... [more]
VA711_ARATH1.745e-1639.34Vesicle-associated membrane protein 711 OS=Arabido... [more]
VA713_ARATH1.477e-1538.21Vesicle-associated membrane protein 713 OS=Arabido... [more]

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Properties
Property NameValue
Genbank descriptionC03003E02SK OF2 Citrus clementina cDNA clone C03003E02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX291052 ID=CX291052; Name=CX291052; organism=Citrus clementina; type=EST; length=538bp
GCACGAGTCTCTCTCTCGCGTAAAAAAGCAAAGCATAGCAACAAACAAAG
TTGGAGAGGAGAGAGAGACCTCTTGGAGCTTTAAAACANAAAAAAAAAAA
AAAAAACAAGCCCAGATCTCATCTCATCTCAACTCGACTCAATTAGTCTC
ATCAAAATGAGCCAGAAATCGCTGATCTACGCCTTCGTGGCGCGTGGAAA
TGTTGTGCTTGCTGAGTACACTGAGTTCAGTGGCAATTTCAACTCCATAG
CCTATCAGTGCCTCCAGAAACTCCCTGCTTCCAACAACAAGTTCACCTAC
AACTGTGATGCTCACACCTTCAATTATCTCGTCGATAATGGTTACACATA
TTGTGTGGTCGCAGATGAATCGTCCGGAAGACAAATACCGATGGCTTTTC
TGGAGCGCGTCAAGGATGAATTTGTTTCCAAATATGGGGGTGGAAAGGCT
GCCACGGCTCCTGCCAATGGCCTGAACAAGGAATTTGGACCAAAATTGAA
AGAACTTATGCAGTACTGTGTTGATCATCCTGAGGAGA
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