CX291063

Overview
NameCX291063
Unique NameCX291063
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length593
Libraries
Library NameType
OF2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig4297 contig Ccv1_Contig4297:774..1366. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX291063 vs. ExPASy Swiss-Prot
Match: Y5541_ARATH (ZF-HD homeobox protein At5g65410 OS=Arabidopsis thaliana GN=At5g65410 PE=1 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 2.727e-27
Identity = 73/197 (37.06%), Postives = 102/197 (51.78%), Query Frame = 2
Query:   14 YKECLKNHAASLGGHALDGCGEFMPSPTATSNDPASLNCAACGCHRNFHRRD-PYEPNAAATHRLPPAATASHSTDPSTVPSPDTNTNSPQHHQPVTSPTPCSYY---SSAPHMLLALSTGFSAPPDDGDDNXXXXXXXXXXXXXFNQVLAANSSDNGKKRSRTKFTQEQKEKMLSFAERLGWKMNRAEEKLTQDFC 592
            ++ECLKN A ++GGHA+DGCGEFMP+    + D  +L CAACGCHRNFHR++ PY  +A   H+ PP     +                         P P SY    S AP + LAL      PP   + +               +  +A +    +KR RTKFT EQKE+ML+ AER+GW++ R ++++ Q FC
Sbjct:   75 FRECLKNQAVNIGGHAVDGCGEFMPAGIEGTID--ALKCAACGCHRNFHRKELPYFHHAPPQHQPPPPPPGFYRL-----------------------PAPVSYRPPPSQAPPLQLAL------PPPQRERSEDPM-----------ETSSAEAGGGIRKRHRTKFTAEQKERMLALAERIGWRIQRQDDEVIQRFC 229          
BLAST of CX291063 vs. ExPASy Swiss-Prot
Match: Y4466_ARATH (ZF-HD homeobox protein At4g24660 OS=Arabidopsis thaliana GN=At4g24660 PE=1 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 6.076e-27
Identity = 74/195 (37.95%), Postives = 100/195 (51.28%), Query Frame = 2
Query:    8 VSYKECLKNHAASLGGHALDGCGEFMPSPTATSNDPASLNCAACGCHRNFHRRDPYEPNAAATHRLPPAATASHSTDPSTVPSPDTNTNSPQHHQPVTSPTPCSYYSSAPHMLLALSTGFSAPPDDGDDNXXXXXXXXXXXXXFNQVLAANSSDNGKKRSRTKFTQEQKEKMLSFAERLGWKMNRAEEKLTQDFC 592
            + Y+ECLKNHA ++GGHA+DGC EFMPS    + D  +L CAACGCHRNFHR++  E      HR+P     ++   P            PQ HQP     P   + ++P      +  +  P   GD+                     +SS    KR RTKFT EQKEKML+FAERLGW++ + ++   + FC
Sbjct:   47 IRYRECLKNHAVNIGGHAVDGCCEFMPSGEDGTLD--ALKCAACGCHRNFHRKET-ESIGGRAHRVP-----TYYNRP------------PQPHQP-----PGYLHLTSP------AAPYRPPAASGDEEDTSNP---------------SSSGGTTKRFRTKFTAEQKEKMLAFAERLGWRIQKHDDVAVEQFC 195          
The following BLAST results are available for this feature:
BLAST of CX291063 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
Y5541_ARATH2.727e-2737.06ZF-HD homeobox protein At5g65410 OS=Arabidopsis th... [more]
Y4466_ARATH6.076e-2737.95ZF-HD homeobox protein At4g24660 OS=Arabidopsis th... [more]
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Properties
Property NameValue
Genbank descriptionC03003F04SK OF2 Citrus clementina cDNA clone C03003F04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX291063 ID=CX291063; Name=CX291063; organism=Citrus clementina; type=EST; length=593bp
AATGGTGGTTTCTTACAAAGAATGTCTGAAAAATCATGCTGCTAGCCTTG
GTGGACATGCCTTGGATGGGTGTGGTGAATTCATGCCTAGCCCCACAGCA
ACCTCTAATGATCCCGCATCCCTCAACTGCGCCGCCTGTGGCTGTCACCG
CAACTTCCACCGCCGTGACCCTTATGAACCCAACGCCGCCGCCACTCACC
GTTTGCCTCCAGCAGCAACAGCAAGTCACAGCACAGACCCCAGCACGGTT
CCAAGCCCAGACACAAACACAAACTCACCTCAACATCACCAGCCAGTTAC
CTCACCAACTCCTTGCTCTTACTACTCATCTGCGCCCCACATGCTGCTGG
CTCTCAGCACTGGCTTCTCTGCACCGCCTGATGATGGTGATGATAATCAT
CCTCGTCATCATCATTATCCCCAGCACCAGCCTCCCTTCAATCAAGTGCT
TGCTGCAAATTCATCAGATAATGGAAAGAAGAGATCAAGAACAAAGTTTA
CACAAGAGCAGAAAGAAAAAATGTTATCTTTTGCCGAAAGGCTAGGCTGG
AAGATGAACAGAGCTGAAGAGAAATTGACCCAAGATTTCTGCA
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