CX291122

Overview
NameCX291122
Unique NameCX291122
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length629
Libraries
Library NameType
OF2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX291122 vs. ExPASy Swiss-Prot
Match: DAPA_TOBAC (Dihydrodipicolinate synthase, chloroplastic OS=Nicotiana tabacum GN=DHPS1 PE=2 SV=1)

HSP 1 Score: 173.711 bits (439), Expect = 6.793e-43
Identity = 81/101 (80.20%), Postives = 92/101 (91.09%), Query Frame = 2
Query:    2 SNLVPGMMRELMFGGKNPSLNTKLFPLIEWLFQEPNPIPLNTALAQLGVVRPVFRLPYVPLPQEKRAEFVNLVNQIGRENFVGEKDVQVLDDDDFILVDRY 304
            SNLVPG+MRELMFGGKNP+LN+KL PL+EWLF EPNPI LNTALAQLGVVRPVFRLPYVPL + KR EFV +V +IGRENF+GE+DVQ+LDD+DFILV RY
Sbjct:  259 SNLVPGLMRELMFGGKNPALNSKLMPLMEWLFHEPNPIALNTALAQLGVVRPVFRLPYVPLTKAKREEFVKIVKEIGRENFIGERDVQILDDNDFILVGRY 359          
BLAST of CX291122 vs. ExPASy Swiss-Prot
Match: DAPA_SOYBN (Dihydrodipicolinate synthase, chloroplastic OS=Glycine max GN=DHPS1 PE=2 SV=1)

HSP 1 Score: 164.851 bits (416), Expect = 3.155e-40
Identity = 78/101 (77.23%), Postives = 88/101 (87.13%), Query Frame = 2
Query:    2 SNLVPGMMRELMFGGKNPSLNTKLFPLIEWLFQEPNPIPLNTALAQLGVVRPVFRLPYVPLPQEKRAEFVNLVNQIGRENFVGEKDVQVLDDDDFILVDRY 304
            SNLVPG+MRELMFGG NP+LN+KL PLI+WLF  PNPI LNTALAQLGV+RPVFRLP+VPLP +KR EF NLV +IGRE+FVG K V+VLDDDDF LV RY
Sbjct:  232 SNLVPGLMRELMFGGVNPTLNSKLLPLIDWLFHMPNPIGLNTALAQLGVIRPVFRLPFVPLPVDKRIEFANLVKEIGREHFVGNKVVEVLDDDDFFLVSRY 332          
BLAST of CX291122 vs. ExPASy Swiss-Prot
Match: DAPA1_ARATH (Dihydrodipicolinate synthase 1, chloroplastic OS=Arabidopsis thaliana GN=DHDPS1 PE=2 SV=2)

HSP 1 Score: 164.466 bits (415), Expect = 4.121e-40
Identity = 77/101 (76.24%), Postives = 89/101 (88.12%), Query Frame = 2
Query:    2 SNLVPGMMRELMFGGKNPSLNTKLFPLIEWLFQEPNPIPLNTALAQLGVVRPVFRLPYVPLPQEKRAEFVNLVNQIGRENFVGEKDVQVLDDDDFILVDRY 304
            SNLVPG+MR+LMF G+N +LN KL PL++WLFQEPNPI +NTALAQLGV RPVFRLPYVPLP  KR EFV LV +IGRE+FVG++DVQVLDDDDFIL+ RY
Sbjct:  265 SNLVPGLMRKLMFEGRNSALNAKLLPLMDWLFQEPNPIGVNTALAQLGVARPVFRLPYVPLPLSKRIEFVKLVKEIGREHFVGDRDVQVLDDDDFILIGRY 365          
BLAST of CX291122 vs. ExPASy Swiss-Prot
Match: DAPA2_ARATH (Dihydrodipicolinate synthase 2, chloroplastic OS=Arabidopsis thaliana GN=DHDPS2 PE=2 SV=2)

HSP 1 Score: 163.31 bits (412), Expect = 9.181e-40
Identity = 78/101 (77.23%), Postives = 87/101 (86.14%), Query Frame = 2
Query:    2 SNLVPGMMRELMFGGKNPSLNTKLFPLIEWLFQEPNPIPLNTALAQLGVVRPVFRLPYVPLPQEKRAEFVNLVNQIGRENFVGEKDVQVLDDDDFILVDRY 304
            SNLVPG+MR+LMF G+N SLN+KL PL+ WLF EPNPI +NTALAQLGV RPVFRLPYVPLP  KR EFV LV +IGRE+FVGEKDVQ LDDDDFIL+ RY
Sbjct:  265 SNLVPGLMRKLMFEGRNSSLNSKLLPLMAWLFHEPNPIGINTALAQLGVSRPVFRLPYVPLPLSKRLEFVKLVKEIGREHFVGEKDVQALDDDDFILIGRY 365          
BLAST of CX291122 vs. ExPASy Swiss-Prot
Match: DAPA_MAIZE (Dihydrodipicolinate synthase, chloroplastic OS=Zea mays PE=1 SV=2)

HSP 1 Score: 157.147 bits (396), Expect = 6.579e-38
Identity = 73/101 (72.28%), Postives = 86/101 (85.15%), Query Frame = 2
Query:    2 SNLVPGMMRELMFGGKNPSLNTKLFPLIEWLFQEPNPIPLNTALAQLGVVRPVFRLPYVPLPQEKRAEFVNLVNQIGRENFVGEKDVQVLDDDDFILVDRY 304
            SNLVPG+M  LM+ G+N +LN KL PL++WLF +PNPI LNTALAQLGV RPVFRLPYVPLP EKRAEFV +V  IGRENFVG+K+ +VLDDDDF+L+ RY
Sbjct:  280 SNLVPGLMHSLMYKGENATLNEKLSPLMKWLFCQPNPIALNTALAQLGVARPVFRLPYVPLPLEKRAEFVRIVESIGRENFVGQKEARVLDDDDFVLISRY 380          
BLAST of CX291122 vs. ExPASy Swiss-Prot
Match: DAPA2_WHEAT (Dihydrodipicolinate synthase 2, chloroplastic OS=Triticum aestivum PE=1 SV=1)

HSP 1 Score: 157.147 bits (396), Expect = 6.579e-38
Identity = 74/101 (73.27%), Postives = 85/101 (84.16%), Query Frame = 2
Query:    2 SNLVPGMMRELMFGGKNPSLNTKLFPLIEWLFQEPNPIPLNTALAQLGVVRPVFRLPYVPLPQEKRAEFVNLVNQIGRENFVGEKDVQVLDDDDFILVDRY 304
            SNLVPG+MR LMF G+N +LN KL PL++WLF EPNPI LNTALAQLGVVRPVFR PY PL  EKR EFV +V  IGRENFVG+K+V+VLDDDDF+L+ RY
Sbjct:  277 SNLVPGLMRSLMFEGENAALNEKLLPLMKWLFSEPNPIGLNTALAQLGVVRPVFRRPYAPLSLEKRTEFVRIVEAIGRENFVGQKEVRVLDDDDFVLISRY 377          
BLAST of CX291122 vs. ExPASy Swiss-Prot
Match: DAPA1_WHEAT (Dihydrodipicolinate synthase 1, chloroplastic OS=Triticum aestivum PE=1 SV=1)

HSP 1 Score: 157.147 bits (396), Expect = 6.579e-38
Identity = 74/101 (73.27%), Postives = 85/101 (84.16%), Query Frame = 2
Query:    2 SNLVPGMMRELMFGGKNPSLNTKLFPLIEWLFQEPNPIPLNTALAQLGVVRPVFRLPYVPLPQEKRAEFVNLVNQIGRENFVGEKDVQVLDDDDFILVDRY 304
            SNLVPG+M  LMF G+N +LN KL PL++WLF EPNPI LNTALAQLGVVRPVFRLPY PLP EKR EFV +V  IGRENFVG+K+ +VLDDDDF+L+ RY
Sbjct:  288 SNLVPGLMHSLMFEGENAALNEKLLPLMKWLFCEPNPIGLNTALAQLGVVRPVFRLPYTPLPLEKRVEFVRIVEAIGRENFVGQKESRVLDDDDFVLISRY 388          
BLAST of CX291122 vs. ExPASy Swiss-Prot
Match: DAPA_COILA (Dihydrodipicolinate synthase, chloroplastic OS=Coix lachryma-jobi GN=DAPA PE=3 SV=1)

HSP 1 Score: 154.066 bits (388), Expect = 5.570e-37
Identity = 72/101 (71.29%), Postives = 84/101 (83.17%), Query Frame = 2
Query:    2 SNLVPGMMRELMFGGKNPSLNTKLFPLIEWLFQEPNPIPLNTALAQLGVVRPVFRLPYVPLPQEKRAEFVNLVNQIGRENFVGEKDVQVLDDDDFILVDRY 304
            SNLVPG+M  LM+ G+N  L  KL PL++WLF +PNPI LNTALAQLGV RPVFRLPYVPLP EKRAEFV +V  IGRENFVG+K+ +VLDDDDF+L+ RY
Sbjct:  277 SNLVPGLMHSLMYKGENAVLKEKLLPLMKWLFCQPNPIALNTALAQLGVARPVFRLPYVPLPLEKRAEFVRIVEAIGRENFVGQKETRVLDDDDFVLISRY 377          
The following BLAST results are available for this feature:
BLAST of CX291122 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
DAPA_TOBAC6.793e-4380.20Dihydrodipicolinate synthase, chloroplastic OS=Nic... [more]
DAPA_SOYBN3.155e-4077.23Dihydrodipicolinate synthase, chloroplastic OS=Gly... [more]
DAPA1_ARATH4.121e-4076.24Dihydrodipicolinate synthase 1, chloroplastic OS=A... [more]
DAPA2_ARATH9.181e-4077.23Dihydrodipicolinate synthase 2, chloroplastic OS=A... [more]
DAPA_MAIZE6.579e-3872.28Dihydrodipicolinate synthase, chloroplastic OS=Zea... [more]
DAPA2_WHEAT6.579e-3873.27Dihydrodipicolinate synthase 2, chloroplastic OS=T... [more]
DAPA1_WHEAT6.579e-3873.27Dihydrodipicolinate synthase 1, chloroplastic OS=T... [more]
DAPA_COILA5.570e-3771.29Dihydrodipicolinate synthase, chloroplastic OS=Coi... [more]
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Properties
Property NameValue
Genbank descriptionC03004D03SK OF2 Citrus clementina cDNA clone C03004D03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX291122 ID=CX291122; Name=CX291122; organism=Citrus clementina; type=EST; length=629bp
AAGCAACTTGGTTCCAGGGATGATGCGAGAACTTATGTTCGGAGGAAAGA
ACCCTTCTCTCAATACAAAGCTCTTCCCACTTATTGAGTGGCTTTTTCAG
GAGCCAAACCCAATTCCCTTAAACACAGCTCTTGCGCAACTTGGAGTTGT
GAGGCCAGTTTTCAGATTACCATATGTACCTCTTCCTCAGGAAAAGAGGG
CAGAATTTGTGAATCTGGTGAACCAAATTGGGAGGGAGAATTTTGTAGGG
GAAAAGGATGTTCAGGTTCTTGATGACGACGACTTCATCTTGGTAGACCG
ATATTAGTTAGTTGTTTCTTGTTTTCATTTTCTGGTTGGTGCTTACAAGC
TCTTGACGTTTGTTATTTTAAACAAGTGTTGTGATTACAGTTGAGCATAT
GGCTGTTGGACCTGTTGGGACTAGTTATCTGGTAATGCCCATTAGAGTAG
CTTTCATGCATGATATAACAAGTGATTGTTTTCTTGTTTATCTTTATGGT
TTGTACCTTTTATATTGCATGGTTTTTCTTAGTTTCATAATTTCAATTTT
TGGTTGTATGAGTAATCATTCTGTATAATAGATGCTGTAATGGAAGCATT
AAGCATTTACAAAAAAAAAAAAAAAAAAA
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