CX291132

Overview
NameCX291132
Unique NameCX291132
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length664
Libraries
Library NameType
OF2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX291132_ssr131 microsatellite CX291132_ssr131:131..142. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig12229 contig Ccv1_Contig12229:120..783. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX291132 vs. ExPASy Swiss-Prot
Match: SERA_ARATH (D-3-phosphoglycerate dehydrogenase, chloroplastic OS=Arabidopsis thaliana GN=At1g17745 PE=1 SV=2)

HSP 1 Score: 219.55 bits (558), Expect = 1.197e-56
Identity = 112/169 (66.27%), Postives = 132/169 (78.11%), Query Frame = 1
Query:  157 KPTVLIAEKLGQAGLDLLNEFANVDCAYNLSPEELCTKISLCDALIVRSGTKVNRDVFESSAGRLKVVGRAGVGIDNVDLAAATEFGCLXXXXXXXXXXXXXXXXXXXXXXXXRNVAQADASVKAGKWQRNKYVGVSLVGKTLAVLGFGKVGSEVARRAKGLGMHVIAH 663
            KP +L+ EKLG+AG++LL EF +VDC+Y+LSPE+L  K++  DALIVRSGTKV R+VFE++ GRLKVVGRAGVGIDNVDL AATE GCL                        RNVAQADAS+KAGKW+R+KYVGVSLVGKTLAV+GFGKVG+EVARRAKGLGM VI+H
Sbjct:   82 KPRILVTEKLGEAGVNLLREFGDVDCSYDLSPEDLKKKVAESDALIVRSGTKVTREVFEAAKGRLKVVGRAGVGIDNVDLQAATEHGCLVVNAPTANTVAAAEHGIALLASMARNVAQADASIKAGKWERSKYVGVSLVGKTLAVMGFGKVGTEVARRAKGLGMTVISH 250          
BLAST of CX291132 vs. ExPASy Swiss-Prot
Match: SERA_METJA (D-3-phosphoglycerate dehydrogenase OS=Methanocaldococcus jannaschii GN=serA PE=3 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 1.020e-31
Identity = 70/166 (42.17%), Postives = 99/166 (59.64%), Query Frame = 1
Query:  166 VLIAEKLGQAGLDLLNEFANVDCAYNLSPEELCTKISLCDALIVRSGTKVNRDVFESSAGRLKVVGRAGVGIDNVDLAAATEFGCLXXXXXXXXXXXXXXXXXXXXXXXXRNVAQADASVKAGKWQRNKYVGVSLVGKTLAVLGFGKVGSEVARRAKGLGMHVIAH 663
            +L+ + L +  + +L E   V+ A  L+ EEL  KI   D L+VRSGTKV RDV E  A +LKV+GRAGVG+DN+D+ AATE G +                        RN+ QA AS+K G+W R ++ G+ L GKTL V+G G++G +V +RAK  GM++I +
Sbjct:    4 ILVTDPLHEDAIKILEEVGEVEVATGLTKEELLEKIKDADVLVVRSGTKVTRDVIEK-AEKLKVIGRAGVGVDNIDVEAATEKGIIVVNAPDASSISVAELTMGLMLAAARNIPQATASLKRGEWDRKRFKGIELYGKTLGVIGLGRIGQQVVKRAKAFGMNIIGY 168          
BLAST of CX291132 vs. ExPASy Swiss-Prot
Match: SERA_METTH (D-3-phosphoglycerate dehydrogenase OS=Methanobacterium thermoautotrophicum GN=serA PE=3 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 1.629e-29
Identity = 68/166 (40.96%), Postives = 99/166 (59.64%), Query Frame = 1
Query:  166 VLIAEKLGQAGLDLLNEFANVDCAYNLSPEELCTKISLCDALIVRSGTKVNRDVFESSAGRLKVVGRAGVGIDNVDLAAATEFGCLXXXXXXXXXXXXXXXXXXXXXXXXRNVAQADASVKAGKWQRNKYVGVSLVGKTLAVLGFGKVGSEVARRAKGLGMHVIAH 663
            VLIA+ + + G+  L E A V     ++PEEL   I   DA++VRS TKV R+V E+ A RLK++ RAGVG+DNVD+ AAT+ G +                        R +A AD SVK GKW++N+++G+ L GKTL ++G G++GS+V  R K  GM ++ +
Sbjct:    6 VLIADSINEKGISELEEVAEVVVNTTITPEELLDAIKDFDAIVVRSRTKVTREVIEA-APRLKIIARAGVGVDNVDVKAATDRGIMVINAPESTSITVAEHSIGLMLALARKIAIADRSVKEGKWEKNRFMGIELNGKTLGIIGMGRIGSQVVVRTKAFGMDIMVY 170          
BLAST of CX291132 vs. ExPASy Swiss-Prot
Match: SERA_ARCFU (D-3-phosphoglycerate dehydrogenase OS=Archaeoglobus fulgidus GN=serA PE=3 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 5.794e-27
Identity = 65/167 (38.92%), Postives = 100/167 (59.88%), Query Frame = 1
Query:  166 VLIAEKLGQAGLDLLNEFA-NVDCAYNLSPEELCTKISLCDALIVRSGTKVNRDVFESSAGRLKVVGRAGVGIDNVDLAAATEFGCLXXXXXXXXXXXXXXXXXXXXXXXXRNVAQADASVKAGKWQRNKYVGVSLVGKTLAVLGFGKVGSEVARRAKGLGMHVIAH 663
            VL+AE + +  +D + +    V+    +S EEL  ++   +A++VRS TKV+ +V ++ A  LK++GRAGVG+DN+D+ AAT+ G +                        R + QAD SVK GKW+R K++G+ L GKT  V+G G+VG EVA+R K L M+V+A+
Sbjct:    3 VLVAEPISEEAIDYMRKNGLEVEVKTGMSREELIREVPKYEAIVVRSQTKVDAEVIQA-AKNLKIIGRAGVGVDNIDINAATQRGIVVVNAPGGNTISTAEHAIALMLAAARKIPQADRSVKEGKWERKKFMGIELRGKTAGVIGLGRVGFEVAKRCKALEMNVLAY 168          
BLAST of CX291132 vs. ExPASy Swiss-Prot
Match: SERA_PONAB (D-3-phosphoglycerate dehydrogenase OS=Pongo abelii GN=PHGDH PE=2 SV=3)

HSP 1 Score: 117.472 bits (293), Expect = 6.405e-26
Identity = 65/141 (46.10%), Postives = 83/141 (58.87%), Query Frame = 1
Query:  241 NLSPEELCTKISLCDALIVRSGTKVNRDVFESSAGRLKVVGRAGVGIDNVDLAAATEFGCLXXXXXXXXXXXXXXXXXXXXXXXXRNVAQADASVKAGKWQRNKYVGVSLVGKTLAVLGFGKVGSEVARRAKGLGMHVIAH 663
            NLS EEL  ++  C+ LIVRS TKV  DV  ++A +L+VVGRAG G+DNVDL AAT  G L                        R + QA AS+K GKW+R K++G  L GKTL +LG G++G EVA R + LGM  I +
Sbjct:   35 NLSKEELIAELQDCEGLIVRSATKVTADVI-NAAEKLQVVGRAGTGVDNVDLEAATRKGILVMNTPNGNSLSAAELTCGMIMCLARQIPQATASMKDGKWERKKFMGTELNGKTLGILGLGRIGREVAIRMQSLGMKTIGY 174          
BLAST of CX291132 vs. ExPASy Swiss-Prot
Match: SERA_PANTR (D-3-phosphoglycerate dehydrogenase OS=Pan troglodytes GN=PHGDH PE=2 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.093e-25
Identity = 64/141 (45.39%), Postives = 82/141 (58.16%), Query Frame = 1
Query:  241 NLSPEELCTKISLCDALIVRSGTKVNRDVFESSAGRLKVVGRAGVGIDNVDLAAATEFGCLXXXXXXXXXXXXXXXXXXXXXXXXRNVAQADASVKAGKWQRNKYVGVSLVGKTLAVLGFGKVGSEVARRAKGLGMHVIAH 663
            NLS EEL  ++  C+ LIVRS TKV  DV  ++A +L+VVGRAG G+DNVDL AAT  G L                        R + QA AS+K GKW+R K++G  L GKTL +LG G++G EVA R +  GM  I +
Sbjct:   35 NLSKEELIAELQDCEGLIVRSATKVTADVI-NAAEKLQVVGRAGTGVDNVDLEAATRKGILVMNTPNGNSLSAAELTCGMIMCLARQIPQATASMKDGKWERKKFMGTELNGKTLGILGLGRIGREVATRMQSFGMKTIGY 174          
BLAST of CX291132 vs. ExPASy Swiss-Prot
Match: SERA_MACFA (D-3-phosphoglycerate dehydrogenase OS=Macaca fascicularis GN=PHGDH PE=2 SV=4)

HSP 1 Score: 116.701 bits (291), Expect = 1.093e-25
Identity = 64/141 (45.39%), Postives = 82/141 (58.16%), Query Frame = 1
Query:  241 NLSPEELCTKISLCDALIVRSGTKVNRDVFESSAGRLKVVGRAGVGIDNVDLAAATEFGCLXXXXXXXXXXXXXXXXXXXXXXXXRNVAQADASVKAGKWQRNKYVGVSLVGKTLAVLGFGKVGSEVARRAKGLGMHVIAH 663
            NLS EEL  ++  C+ LIVRS TKV  DV  ++A +L+VVGRAG G+DNVDL AAT  G L                        R + QA AS+K GKW+R K++G  L GKTL +LG G++G EVA R +  GM  I +
Sbjct:   35 NLSKEELIAELQDCEGLIVRSATKVTADVI-NAAEKLQVVGRAGTGVDNVDLEAATRKGVLVMNTPNGNSLSAAELTCGMIMCLARQIPQATASMKDGKWERKKFMGTELNGKTLGILGLGRIGREVATRMQSFGMKTIGY 174          
BLAST of CX291132 vs. ExPASy Swiss-Prot
Match: SERA_HUMAN (D-3-phosphoglycerate dehydrogenase OS=Homo sapiens GN=PHGDH PE=1 SV=4)

HSP 1 Score: 116.701 bits (291), Expect = 1.093e-25
Identity = 64/141 (45.39%), Postives = 82/141 (58.16%), Query Frame = 1
Query:  241 NLSPEELCTKISLCDALIVRSGTKVNRDVFESSAGRLKVVGRAGVGIDNVDLAAATEFGCLXXXXXXXXXXXXXXXXXXXXXXXXRNVAQADASVKAGKWQRNKYVGVSLVGKTLAVLGFGKVGSEVARRAKGLGMHVIAH 663
            NLS EEL  ++  C+ LIVRS TKV  DV  ++A +L+VVGRAG G+DNVDL AAT  G L                        R + QA AS+K GKW+R K++G  L GKTL +LG G++G EVA R +  GM  I +
Sbjct:   35 NLSKEELIAELQDCEGLIVRSATKVTADVI-NAAEKLQVVGRAGTGVDNVDLEAATRKGILVMNTPNGNSLSAAELTCGMIMCLARQIPQATASMKDGKWERKKFMGTELNGKTLGILGLGRIGREVATRMQSFGMKTIGY 174          
BLAST of CX291132 vs. ExPASy Swiss-Prot
Match: SERA_SYNY3 (D-3-phosphoglycerate dehydrogenase OS=Synechocystis sp. (strain PCC 6803) GN=serA PE=3 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.427e-25
Identity = 59/166 (35.54%), Postives = 96/166 (57.83%), Query Frame = 1
Query:  166 VLIAEKLGQAGLDLLNEFANVDCAYNLSPEELCTKISLCDALIVRSGTKVNRDVFESSAGRLKVVGRAGVGIDNVDLAAATEFGCLXXXXXXXXXXXXXXXXXXXXXXXXRNVAQADASVKAGKWQRNKYVGVSLVGKTLAVLGFGKVGSEVARRAKGLGMHVIAH 663
            VL+++ + Q G+D+L + A VD    LS  E+   +   DA+++RS TKV   + ++ + +LK++GRAGVG+DN+D+ AAT  G +                        R++  A+ SVK  KW+R +++G  +  KTL V+G GK+GS VA  AK +GM ++A+
Sbjct:   32 VLVSDSIDQVGIDILKQVAQVDVKTGLSEAEIIDIVPEYDAIMLRSATKVTEKIIQAGS-QLKIIGRAGVGVDNIDVPAATRQGIVVVNSPEGNTIAAAEHALAMMMALARHIPDANKSVKESKWERKQFIGTEVYKKTLGVVGLGKIGSHVAGVAKAMGMKLLAY 196          
BLAST of CX291132 vs. ExPASy Swiss-Prot
Match: SERA_RAT (D-3-phosphoglycerate dehydrogenase OS=Rattus norvegicus GN=Phgdh PE=1 SV=3)

HSP 1 Score: 115.546 bits (288), Expect = 2.434e-25
Identity = 63/141 (44.68%), Postives = 81/141 (57.45%), Query Frame = 1
Query:  241 NLSPEELCTKISLCDALIVRSGTKVNRDVFESSAGRLKVVGRAGVGIDNVDLAAATEFGCLXXXXXXXXXXXXXXXXXXXXXXXXRNVAQADASVKAGKWQRNKYVGVSLVGKTLAVLGFGKVGSEVARRAKGLGMHVIAH 663
            NLS EEL  ++  C+ LIVRS TKV  DV  ++A +L+VVGRAG G+DNVDL AAT  G L                        R + QA AS+K GKW R K++G  L GKTL +LG G++G EVA R +  GM  + +
Sbjct:   35 NLSKEELIAELQDCEGLIVRSATKVTADVI-NAAEKLQVVGRAGTGVDNVDLEAATRKGVLVMNTPNGNSLSAAELTCGMLMCLARQIPQATASMKDGKWDRKKFMGTELNGKTLGILGLGRIGREVAARMQAFGMKTVGY 174          
The following BLAST results are available for this feature:
BLAST of CX291132 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 27
Match NameE-valueIdentityDescription
SERA_ARATH1.197e-5666.27D-3-phosphoglycerate dehydrogenase, chloroplastic ... [more]
SERA_METJA1.020e-3142.17D-3-phosphoglycerate dehydrogenase OS=Methanocaldo... [more]
SERA_METTH1.629e-2940.96D-3-phosphoglycerate dehydrogenase OS=Methanobacte... [more]
SERA_ARCFU5.794e-2738.92D-3-phosphoglycerate dehydrogenase OS=Archaeoglobu... [more]
SERA_PONAB6.405e-2646.10D-3-phosphoglycerate dehydrogenase OS=Pongo abelii... [more]
SERA_PANTR1.093e-2545.39D-3-phosphoglycerate dehydrogenase OS=Pan troglody... [more]
SERA_MACFA1.093e-2545.39D-3-phosphoglycerate dehydrogenase OS=Macaca fasci... [more]
SERA_HUMAN1.093e-2545.39D-3-phosphoglycerate dehydrogenase OS=Homo sapiens... [more]
SERA_SYNY31.427e-2535.54D-3-phosphoglycerate dehydrogenase OS=Synechocysti... [more]
SERA_RAT2.434e-2544.68D-3-phosphoglycerate dehydrogenase OS=Rattus norve... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC03004E01SK OF2 Citrus clementina cDNA clone C03004E01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX291132 ID=CX291132; Name=CX291132; organism=Citrus clementina; type=EST; length=664bp
ATTCGGCACGAGGCCTCCCTCCGTCAGCCTTCCCTCAAGCTATCACTGTC
TTCCAAACACTCTCTTTCCCCTCTATTCTCCGTCTCCTTCAACCACAAGC
GGGCCCCGCCGCGGCTCGTAATAATCGCATCCGCCGCCGCCGACGGCATC
TCCTCAAAACCGACCGTTTTGATCGCCGAGAAGCTCGGACAGGCCGGCTT
GGATCTTCTCAACGAGTTCGCCAACGTGGACTGCGCATACAACTTGTCGC
CAGAGGAGCTCTGCACGAAGATCTCGCTCTGCGACGCGCTGATCGTGCGC
AGCGGCACGAAGGTCAATCGCGACGTGTTCGAGTCGTCAGCTGGAAGGTT
GAAGGTCGTTGGGAGAGCCGGTGTTGGTATTGATAATGTGGATCTGGCTG
CGGCTACTGAGTTTGGTTGCTTGGTTGTGAACGCGCCGACGGCGAATACC
GTTGCGGCTGCTGAGCATGGGATCGCGCTTTTGGCTGCCATGGCTAGAAA
TGTCGCCCAGGCTGATGCCTCTGTTAAGGCTGGAAAGTGGCAAAGGAACA
AATATGTGGGTGTCTCCCTTGTGGGTAAAACACTTGCTGTATTGGGATTC
GGAAAGGTTGGATCAGAAGTTGCTCGTCGTGCCAAGGGTCTGGGTATGCA
TGTCATTGCACATG
back to top