CX291249

Overview
NameCX291249
Unique NameCX291249
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length484
Libraries
Library NameType
OF2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10813 contig Ccv1_Contig10813:397..880. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX291249 vs. ExPASy Swiss-Prot
Match: RK3B_ARATH (50S ribosomal protein L3-2, chloroplastic OS=Arabidopsis thaliana GN=RPL3B PE=2 SV=1)

HSP 1 Score: 242.276 bits (617), Expect = 8.476e-64
Identity = 118/159 (74.21%), Postives = 125/159 (78.62%), Query Frame = 3
Query:    6 FSLHVGCGQKKDKHMTKPEVGHFRAQGVPLKRKLREFPVTEDALLPIGTSLGVRHFIPGQYVDIXXXXXXXXXXXXXXRWGFKGMPASHGASLSHRSLGSTGQRDAPGKVFXXXXXXXXXXXXQRTVKNVWVYKIDPARNLMWVRGQVPGASGNFVFIK 482
            F+L +GCGQKK KH++K  VGHFRAQGVPLKRKLREFPVTEDALLP+GTSLGVRHF+PGQYVD+              R GF GMPASHGASLSHRS GSTGQRDAPGKVF            QRTVKNVWVYKIDPARNLMWVRGQVPGA GNFVFIK
Sbjct:  121 FALQIGCGQKKPKHLSKAVVGHFRAQGVPLKRKLREFPVTEDALLPVGTSLGVRHFVPGQYVDVTGITRGKGFQGCMKRHGFSGMPASHGASLSHRSGGSTGQRDAPGKVFKGRKMAGRMGADQRTVKNVWVYKIDPARNLMWVRGQVPGAEGNFVFIK 279          
BLAST of CX291249 vs. ExPASy Swiss-Prot
Match: RL3_ZYMMO (50S ribosomal protein L3 OS=Zymomonas mobilis GN=rplC PE=3 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 4.536e-33
Identity = 73/160 (45.62%), Postives = 95/160 (59.38%), Query Frame = 3
Query:    3 FFSLHVGCGQKKDKHMTKPEVGHFRAQGVPLKRKLREFPVTEDALLPIGTSLGVRHFIPGQYVDIXXXXXXXXXXXXXXRWGFKGMPASHGASLSHRSLGSTGQRDAPGKVFXXXXXXXXXXXXQRTVKNVWVYKIDPARNLMWVRGQVPGASGNFVFIK 482
            + ++ +G G  K K++TKP  GHF    V LK KL EFPV+EDA+L +GTS+   HFI GQ VDI              RWGF G+ A+HG SLSHRS GSTG R  PG+VF            QRT +N+ V   D  R+L++VRG VPG+ G ++ I+
Sbjct:   46 YVAVQLGAGSAKAKNVTKPVRGHFAKAEVELKAKLVEFPVSEDAVLEVGTSISADHFIAGQLVDISGQTQGKGFAGAMKRWGFGGLRATHGVSLSHRSHGSTGNRQDPGRVFKNKKMAGHMGARQRTQQNLEVISTDAERDLIFVRGSVPGSKGAWLIIR 205          
BLAST of CX291249 vs. ExPASy Swiss-Prot
Match: RL3_NOVAD (50S ribosomal protein L3 OS=Novosphingobium aromaticivorans (strain DSM 12444) GN=rplC PE=3 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 8.555e-32
Identity = 65/160 (40.62%), Postives = 95/160 (59.38%), Query Frame = 3
Query:    3 FFSLHVGCGQKKDKHMTKPEVGHFRAQGVPLKRKLREFPVTEDALLPIGTSLGVRHFIPGQYVDIXXXXXXXXXXXXXXRWGFKGMPASHGASLSHRSLGSTGQRDAPGKVFXXXXXXXXXXXXQRTVKNVWVYKIDPARNLMWVRGQVPGASGNFVFIK 482
            + +L +G G+ K K++ KP+  HF    VPLK ++ EF V +DALL +G+++   HF+PGQYVDI              RWGF GM A+HG S+SHR+ GSTG R  PG+VF            QRT +N+ V + D  R L++V+G VPG+   ++ ++
Sbjct:   46 YVALQLGAGEAKQKNVAKPQREHFAKAEVPLKMEVAEFRVADDALLDVGSTIAASHFVPGQYVDITGQTQGKGFQGAMKRWGFGGMRATHGVSISHRAHGSTGNRQDPGRVFKNKKMAGHMGDRQRTQQNLEVVRTDDERGLIFVKGSVPGSKNAWLLVR 205          
BLAST of CX291249 vs. ExPASy Swiss-Prot
Match: RL3_METS4 (50S ribosomal protein L3 OS=Methylobacterium sp. (strain 4-46) GN=rplC PE=3 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 5.545e-31
Identity = 68/160 (42.50%), Postives = 92/160 (57.50%), Query Frame = 3
Query:    3 FFSLHVGCGQKKDKHMTKPEVGHFRAQGVPLKRKLREFPVTEDALLPIGTSLGVRHFIPGQYVDIXXXXXXXXXXXXXXRWGFKGMPASHGASLSHRSLGSTGQRDAPGKVFXXXXXXXXXXXXQRTVKNVWVYKIDPARNLMWVRGQVPGASGNFVFIK 482
            + +L VG G+ K K+++K E G F    V  KRKL EF VTEDAL+P+G  +   HFIPGQ+VD+              RW F G+ A+HG S+SHRS+GSTG R  PGK F            + T +N+ V + DP R L+ V G VPG +G ++ I+
Sbjct:   46 YVALQVGVGKAKVKNVSKAERGRFAIAKVEPKRKLAEFRVTEDALIPVGAEITADHFIPGQFVDVTGTTTGKGFAGGMKRWNFGGLRATHGVSISHRSIGSTGGRQDPGKTFKNKKMPGHLGVERVTTQNLRVVRTDPERGLILVEGAVPGVAGGWIQIR 205          
BLAST of CX291249 vs. ExPASy Swiss-Prot
Match: RL3_METNO (50S ribosomal protein L3 OS=Methylobacterium nodulans (strain ORS2060 / LMG 21967) GN=rplC PE=3 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 5.545e-31
Identity = 67/160 (41.88%), Postives = 92/160 (57.50%), Query Frame = 3
Query:    3 FFSLHVGCGQKKDKHMTKPEVGHFRAQGVPLKRKLREFPVTEDALLPIGTSLGVRHFIPGQYVDIXXXXXXXXXXXXXXRWGFKGMPASHGASLSHRSLGSTGQRDAPGKVFXXXXXXXXXXXXQRTVKNVWVYKIDPARNLMWVRGQVPGASGNFVFIK 482
            + +L VG G+ K K+++K E G F    V  KRKL EF V+EDAL+P+G  +   HFIPGQ+VD+              RW F G+ ASHG S+SHRS+GSTG R  PGK F            + T +N+ V + DP R L+ V G VPG +G ++ ++
Sbjct:   46 YVALQVGVGKAKVKNVSKAERGRFAIAKVEPKRKLAEFRVSEDALIPVGAEITADHFIPGQFVDVTGITTGKGFAGGMKRWNFGGLRASHGVSISHRSIGSTGGRQDPGKTFKNKKMPGHLGVERVTTQNLRVVRTDPERGLILVEGAVPGVAGGWIHVR 205          
BLAST of CX291249 vs. ExPASy Swiss-Prot
Match: RL3_SPHWW (50S ribosomal protein L3 OS=Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273) GN=rplC PE=3 SV=2)

HSP 1 Score: 132.88 bits (333), Expect = 7.242e-31
Identity = 65/160 (40.62%), Postives = 92/160 (57.50%), Query Frame = 3
Query:    3 FFSLHVGCGQKKDKHMTKPEVGHFRAQGVPLKRKLREFPVTEDALLPIGTSLGVRHFIPGQYVDIXXXXXXXXXXXXXXRWGFKGMPASHGASLSHRSLGSTGQRDAPGKVFXXXXXXXXXXXXQRTVKNVWVYKIDPARNLMWVRGQVPGASGNFVFIK 482
            + ++ +G G  K K++TKPE GHF    V  K  + EF V+ED LL +G  +   H++ GQ+VDI              RWGF G+ A+HG S+SHRSLGSTGQR  PGKVF             RT +N+ + + D  R L++V+G VPG+ G ++ +K
Sbjct:   46 YVAVQLGAGSAKPKNLTKPERGHFGKAEVEPKAFVAEFRVSEDGLLDVGAEISADHYVAGQFVDIQGSTQGKGFAGGMKRWGFGGLRATHGVSVSHRSLGSTGQRQDPGKVFKNKKMAGHMGDKNRTQQNLEIVQTDAERGLLFVKGSVPGSKGGWLLVK 205          
BLAST of CX291249 vs. ExPASy Swiss-Prot
Match: RL3_METRJ (50S ribosomal protein L3 OS=Methylobacterium radiotolerans (strain ATCC 27329 / DSM 1819 / JCM 2831) GN=rplC PE=3 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 4.694e-30
Identity = 66/160 (41.25%), Postives = 91/160 (56.88%), Query Frame = 3
Query:    3 FFSLHVGCGQKKDKHMTKPEVGHFRAQGVPLKRKLREFPVTEDALLPIGTSLGVRHFIPGQYVDIXXXXXXXXXXXXXXRWGFKGMPASHGASLSHRSLGSTGQRDAPGKVFXXXXXXXXXXXXQRTVKNVWVYKIDPARNLMWVRGQVPGASGNFVFIK 482
            + +L VG G+ K K+++  E G F    V  K+KL EF VTEDAL+P+G  +   HFIPGQ+VD+              RW F G+ A+HG S+SHRS+GSTG R  PGK F            + T +N+ V + DP R L+ V G VPG +G ++ I+
Sbjct:   46 YVALQVGVGKAKVKNVSAAERGRFAVAKVEPKKKLAEFRVTEDALIPVGAEITADHFIPGQFVDVTGTTTGKGFAGGIKRWNFGGLRATHGVSISHRSIGSTGGRQDPGKTFKNKKMPGHLGVERVTTQNLRVVRTDPERGLILVEGAVPGVAGGWIQIR 205          
BLAST of CX291249 vs. ExPASy Swiss-Prot
Match: RL3_GRABC (50S ribosomal protein L3 OS=Granulibacter bethesdensis (strain ATCC BAA-1260 / CGDNIH1) GN=rplC PE=3 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 6.131e-30
Identity = 66/160 (41.25%), Postives = 88/160 (55.00%), Query Frame = 3
Query:    3 FFSLHVGCGQKKDKHMTKPEVGHFRAQGVPLKRKLREFPVTEDALLPIGTSLGVRHFIPGQYVDIXXXXXXXXXXXXXXRWGFKGMPASHGASLSHRSLGSTGQRDAPGKVFXXXXXXXXXXXXQRTVKNVWVYKIDPARNLMWVRGQVPGASGNFVFIK 482
            + ++ +G GQ K KH++K   GHF    V  K+KL EF V EDA+L  G +L   HF+ GQ VD+              RW F G+ ASHG S+SHRS GSTG R  PGK F            + T +NV V  +D AR L+ +RG +PGA G +V ++
Sbjct:   46 YTAVQLGFGQAKPKHVSKANKGHFARVKVEPKKKLVEFRVAEDAILEPGATLSAEHFLVGQKVDVTGTSKGKGFAGAMKRWNFAGLEASHGVSISHRSHGSTGNRQDPGKTFKNKKMAGHLGDERVTTQNVEVAHVDAARGLLMIRGSIPGAKGGYVLVR 205          
BLAST of CX291249 vs. ExPASy Swiss-Prot
Match: RL3_METPB (50S ribosomal protein L3 OS=Methylobacterium populi (strain ATCC BAA-705 / NCIMB 13946 / BJ001) GN=rplC PE=3 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 1.046e-29
Identity = 64/160 (40.00%), Postives = 92/160 (57.50%), Query Frame = 3
Query:    3 FFSLHVGCGQKKDKHMTKPEVGHFRAQGVPLKRKLREFPVTEDALLPIGTSLGVRHFIPGQYVDIXXXXXXXXXXXXXXRWGFKGMPASHGASLSHRSLGSTGQRDAPGKVFXXXXXXXXXXXXQRTVKNVWVYKIDPARNLMWVRGQVPGASGNFVFIK 482
            + +L VG G+ K K++++ E G F    V  K+KL EF V+EDAL+P+G  +   HFIPGQ+VD+              RW F G+ A+HG S+SHRS+GSTG R  PGK F            + T +N+ V + DP R L+ V G VPG +G ++ ++
Sbjct:   46 YVALQVGVGKAKVKNVSQAERGRFAVAKVEPKKKLAEFRVSEDALIPVGAEITADHFIPGQFVDVTGTTTGKGFAGGMKRWNFGGLRATHGVSISHRSIGSTGGRQDPGKTFKNKKMPGHLGVERVTTQNLKVVRTDPERGLILVEGAVPGVAGGWIQVR 205          
BLAST of CX291249 vs. ExPASy Swiss-Prot
Match: RL3_METEP (50S ribosomal protein L3 OS=Methylobacterium extorquens (strain PA1) GN=rplC PE=3 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 1.046e-29
Identity = 64/160 (40.00%), Postives = 92/160 (57.50%), Query Frame = 3
Query:    3 FFSLHVGCGQKKDKHMTKPEVGHFRAQGVPLKRKLREFPVTEDALLPIGTSLGVRHFIPGQYVDIXXXXXXXXXXXXXXRWGFKGMPASHGASLSHRSLGSTGQRDAPGKVFXXXXXXXXXXXXQRTVKNVWVYKIDPARNLMWVRGQVPGASGNFVFIK 482
            + +L VG G+ K K++++ E G F    V  K+KL EF V+EDAL+P+G  +   HFIPGQ+VD+              RW F G+ A+HG S+SHRS+GSTG R  PGK F            + T +N+ V + DP R L+ V G VPG +G ++ ++
Sbjct:   46 YVALQVGVGKAKVKNVSQAERGRFAVAKVEPKKKLAEFRVSEDALIPVGAEITADHFIPGQFVDVTGTSTGKGFAGGMKRWNFGGLRATHGVSISHRSIGSTGGRQDPGKTFKNKKMPGHLGVERVTTQNLKVVRTDPERGLILVEGAVPGVAGGWIQVR 205          
The following BLAST results are available for this feature:
BLAST of CX291249 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RK3B_ARATH8.476e-6474.2150S ribosomal protein L3-2, chloroplastic OS=Arabi... [more]
RL3_ZYMMO4.536e-3345.6350S ribosomal protein L3 OS=Zymomonas mobilis GN=r... [more]
RL3_NOVAD8.555e-3240.6350S ribosomal protein L3 OS=Novosphingobium aromat... [more]
RL3_METS45.545e-3142.5050S ribosomal protein L3 OS=Methylobacterium sp. (... [more]
RL3_METNO5.545e-3141.8850S ribosomal protein L3 OS=Methylobacterium nodul... [more]
RL3_SPHWW7.242e-3140.6350S ribosomal protein L3 OS=Sphingomonas wittichii... [more]
RL3_METRJ4.694e-3041.2550S ribosomal protein L3 OS=Methylobacterium radio... [more]
RL3_GRABC6.131e-3041.2550S ribosomal protein L3 OS=Granulibacter bethesde... [more]
RL3_METPB1.046e-2940.0050S ribosomal protein L3 OS=Methylobacterium popul... [more]
RL3_METEP1.046e-2940.0050S ribosomal protein L3 OS=Methylobacterium extor... [more]

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Properties
Property NameValue
Genbank descriptionC03005G12SK OF2 Citrus clementina cDNA clone C03005G12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX291249 ID=CX291249; Name=CX291249; organism=Citrus clementina; type=EST; length=484bp
GTTTCTTTTCCTTGCACGTTGGATGCGGGCAGAAGAAGGATAAACATATG
ACAAAACCTGAAGTGGGTCATTTTAGAGCTCAAGGTGTTCCACTGAAGAG
GAAATTGCGGGAGTTTCCTGTCACAGAAGATGCACTTCTCCCCATTGGCA
CATCACTTGGAGTTCGTCATTTTATTCCTGGCCAATACGTTGATATCACG
GGTACCACGAAAGGGAAAGGTTTTCAGGGTGGAATGAAAAGATGGGGATT
TAAAGGAATGCCAGCTTCTCATGGTGCATCATTGTCGCATCGAAGTCTTG
GTTCTACCGGTCAGAGGGATGCTCCTGGCAAGGTATTTAAGGGCAAAAAA
ATGCCTGGGCGAATGGGTGGAAAGCAGAGAACCGTAAAAAATGTATGGGT
ATACAAAATAGATCCAGCAAGGAATTTGATGTGGGTGAGAGGCCAGGTGC
CAGGTGCTTCAGGAAACTTTGTATTTATAAAGGA
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