CX291249
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CX291249 vs. ExPASy Swiss-Prot
Match: RK3B_ARATH (50S ribosomal protein L3-2, chloroplastic OS=Arabidopsis thaliana GN=RPL3B PE=2 SV=1) HSP 1 Score: 242.276 bits (617), Expect = 8.476e-64 Identity = 118/159 (74.21%), Postives = 125/159 (78.62%), Query Frame = 3 Query: 6 FSLHVGCGQKKDKHMTKPEVGHFRAQGVPLKRKLREFPVTEDALLPIGTSLGVRHFIPGQYVDIXXXXXXXXXXXXXXRWGFKGMPASHGASLSHRSLGSTGQRDAPGKVFXXXXXXXXXXXXQRTVKNVWVYKIDPARNLMWVRGQVPGASGNFVFIK 482 F+L +GCGQKK KH++K VGHFRAQGVPLKRKLREFPVTEDALLP+GTSLGVRHF+PGQYVD+ R GF GMPASHGASLSHRS GSTGQRDAPGKVF QRTVKNVWVYKIDPARNLMWVRGQVPGA GNFVFIK Sbjct: 121 FALQIGCGQKKPKHLSKAVVGHFRAQGVPLKRKLREFPVTEDALLPVGTSLGVRHFVPGQYVDVTGITRGKGFQGCMKRHGFSGMPASHGASLSHRSGGSTGQRDAPGKVFKGRKMAGRMGADQRTVKNVWVYKIDPARNLMWVRGQVPGAEGNFVFIK 279
BLAST of CX291249 vs. ExPASy Swiss-Prot
Match: RL3_ZYMMO (50S ribosomal protein L3 OS=Zymomonas mobilis GN=rplC PE=3 SV=1) HSP 1 Score: 140.198 bits (352), Expect = 4.536e-33 Identity = 73/160 (45.62%), Postives = 95/160 (59.38%), Query Frame = 3 Query: 3 FFSLHVGCGQKKDKHMTKPEVGHFRAQGVPLKRKLREFPVTEDALLPIGTSLGVRHFIPGQYVDIXXXXXXXXXXXXXXRWGFKGMPASHGASLSHRSLGSTGQRDAPGKVFXXXXXXXXXXXXQRTVKNVWVYKIDPARNLMWVRGQVPGASGNFVFIK 482 + ++ +G G K K++TKP GHF V LK KL EFPV+EDA+L +GTS+ HFI GQ VDI RWGF G+ A+HG SLSHRS GSTG R PG+VF QRT +N+ V D R+L++VRG VPG+ G ++ I+ Sbjct: 46 YVAVQLGAGSAKAKNVTKPVRGHFAKAEVELKAKLVEFPVSEDAVLEVGTSISADHFIAGQLVDISGQTQGKGFAGAMKRWGFGGLRATHGVSLSHRSHGSTGNRQDPGRVFKNKKMAGHMGARQRTQQNLEVISTDAERDLIFVRGSVPGSKGAWLIIR 205
BLAST of CX291249 vs. ExPASy Swiss-Prot
Match: RL3_NOVAD (50S ribosomal protein L3 OS=Novosphingobium aromaticivorans (strain DSM 12444) GN=rplC PE=3 SV=1) HSP 1 Score: 135.961 bits (341), Expect = 8.555e-32 Identity = 65/160 (40.62%), Postives = 95/160 (59.38%), Query Frame = 3 Query: 3 FFSLHVGCGQKKDKHMTKPEVGHFRAQGVPLKRKLREFPVTEDALLPIGTSLGVRHFIPGQYVDIXXXXXXXXXXXXXXRWGFKGMPASHGASLSHRSLGSTGQRDAPGKVFXXXXXXXXXXXXQRTVKNVWVYKIDPARNLMWVRGQVPGASGNFVFIK 482 + +L +G G+ K K++ KP+ HF VPLK ++ EF V +DALL +G+++ HF+PGQYVDI RWGF GM A+HG S+SHR+ GSTG R PG+VF QRT +N+ V + D R L++V+G VPG+ ++ ++ Sbjct: 46 YVALQLGAGEAKQKNVAKPQREHFAKAEVPLKMEVAEFRVADDALLDVGSTIAASHFVPGQYVDITGQTQGKGFQGAMKRWGFGGMRATHGVSISHRAHGSTGNRQDPGRVFKNKKMAGHMGDRQRTQQNLEVVRTDDERGLIFVKGSVPGSKNAWLLVR 205
BLAST of CX291249 vs. ExPASy Swiss-Prot
Match: RL3_METS4 (50S ribosomal protein L3 OS=Methylobacterium sp. (strain 4-46) GN=rplC PE=3 SV=1) HSP 1 Score: 133.265 bits (334), Expect = 5.545e-31 Identity = 68/160 (42.50%), Postives = 92/160 (57.50%), Query Frame = 3 Query: 3 FFSLHVGCGQKKDKHMTKPEVGHFRAQGVPLKRKLREFPVTEDALLPIGTSLGVRHFIPGQYVDIXXXXXXXXXXXXXXRWGFKGMPASHGASLSHRSLGSTGQRDAPGKVFXXXXXXXXXXXXQRTVKNVWVYKIDPARNLMWVRGQVPGASGNFVFIK 482 + +L VG G+ K K+++K E G F V KRKL EF VTEDAL+P+G + HFIPGQ+VD+ RW F G+ A+HG S+SHRS+GSTG R PGK F + T +N+ V + DP R L+ V G VPG +G ++ I+ Sbjct: 46 YVALQVGVGKAKVKNVSKAERGRFAIAKVEPKRKLAEFRVTEDALIPVGAEITADHFIPGQFVDVTGTTTGKGFAGGMKRWNFGGLRATHGVSISHRSIGSTGGRQDPGKTFKNKKMPGHLGVERVTTQNLRVVRTDPERGLILVEGAVPGVAGGWIQIR 205
BLAST of CX291249 vs. ExPASy Swiss-Prot
Match: RL3_METNO (50S ribosomal protein L3 OS=Methylobacterium nodulans (strain ORS2060 / LMG 21967) GN=rplC PE=3 SV=1) HSP 1 Score: 133.265 bits (334), Expect = 5.545e-31 Identity = 67/160 (41.88%), Postives = 92/160 (57.50%), Query Frame = 3 Query: 3 FFSLHVGCGQKKDKHMTKPEVGHFRAQGVPLKRKLREFPVTEDALLPIGTSLGVRHFIPGQYVDIXXXXXXXXXXXXXXRWGFKGMPASHGASLSHRSLGSTGQRDAPGKVFXXXXXXXXXXXXQRTVKNVWVYKIDPARNLMWVRGQVPGASGNFVFIK 482 + +L VG G+ K K+++K E G F V KRKL EF V+EDAL+P+G + HFIPGQ+VD+ RW F G+ ASHG S+SHRS+GSTG R PGK F + T +N+ V + DP R L+ V G VPG +G ++ ++ Sbjct: 46 YVALQVGVGKAKVKNVSKAERGRFAIAKVEPKRKLAEFRVSEDALIPVGAEITADHFIPGQFVDVTGITTGKGFAGGMKRWNFGGLRASHGVSISHRSIGSTGGRQDPGKTFKNKKMPGHLGVERVTTQNLRVVRTDPERGLILVEGAVPGVAGGWIHVR 205
BLAST of CX291249 vs. ExPASy Swiss-Prot
Match: RL3_SPHWW (50S ribosomal protein L3 OS=Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273) GN=rplC PE=3 SV=2) HSP 1 Score: 132.88 bits (333), Expect = 7.242e-31 Identity = 65/160 (40.62%), Postives = 92/160 (57.50%), Query Frame = 3 Query: 3 FFSLHVGCGQKKDKHMTKPEVGHFRAQGVPLKRKLREFPVTEDALLPIGTSLGVRHFIPGQYVDIXXXXXXXXXXXXXXRWGFKGMPASHGASLSHRSLGSTGQRDAPGKVFXXXXXXXXXXXXQRTVKNVWVYKIDPARNLMWVRGQVPGASGNFVFIK 482 + ++ +G G K K++TKPE GHF V K + EF V+ED LL +G + H++ GQ+VDI RWGF G+ A+HG S+SHRSLGSTGQR PGKVF RT +N+ + + D R L++V+G VPG+ G ++ +K Sbjct: 46 YVAVQLGAGSAKPKNLTKPERGHFGKAEVEPKAFVAEFRVSEDGLLDVGAEISADHYVAGQFVDIQGSTQGKGFAGGMKRWGFGGLRATHGVSVSHRSLGSTGQRQDPGKVFKNKKMAGHMGDKNRTQQNLEIVQTDAERGLLFVKGSVPGSKGGWLLVK 205
BLAST of CX291249 vs. ExPASy Swiss-Prot
Match: RL3_METRJ (50S ribosomal protein L3 OS=Methylobacterium radiotolerans (strain ATCC 27329 / DSM 1819 / JCM 2831) GN=rplC PE=3 SV=1) HSP 1 Score: 130.183 bits (326), Expect = 4.694e-30 Identity = 66/160 (41.25%), Postives = 91/160 (56.88%), Query Frame = 3 Query: 3 FFSLHVGCGQKKDKHMTKPEVGHFRAQGVPLKRKLREFPVTEDALLPIGTSLGVRHFIPGQYVDIXXXXXXXXXXXXXXRWGFKGMPASHGASLSHRSLGSTGQRDAPGKVFXXXXXXXXXXXXQRTVKNVWVYKIDPARNLMWVRGQVPGASGNFVFIK 482 + +L VG G+ K K+++ E G F V K+KL EF VTEDAL+P+G + HFIPGQ+VD+ RW F G+ A+HG S+SHRS+GSTG R PGK F + T +N+ V + DP R L+ V G VPG +G ++ I+ Sbjct: 46 YVALQVGVGKAKVKNVSAAERGRFAVAKVEPKKKLAEFRVTEDALIPVGAEITADHFIPGQFVDVTGTTTGKGFAGGIKRWNFGGLRATHGVSISHRSIGSTGGRQDPGKTFKNKKMPGHLGVERVTTQNLRVVRTDPERGLILVEGAVPGVAGGWIQIR 205
BLAST of CX291249 vs. ExPASy Swiss-Prot
Match: RL3_GRABC (50S ribosomal protein L3 OS=Granulibacter bethesdensis (strain ATCC BAA-1260 / CGDNIH1) GN=rplC PE=3 SV=1) HSP 1 Score: 129.798 bits (325), Expect = 6.131e-30 Identity = 66/160 (41.25%), Postives = 88/160 (55.00%), Query Frame = 3 Query: 3 FFSLHVGCGQKKDKHMTKPEVGHFRAQGVPLKRKLREFPVTEDALLPIGTSLGVRHFIPGQYVDIXXXXXXXXXXXXXXRWGFKGMPASHGASLSHRSLGSTGQRDAPGKVFXXXXXXXXXXXXQRTVKNVWVYKIDPARNLMWVRGQVPGASGNFVFIK 482 + ++ +G GQ K KH++K GHF V K+KL EF V EDA+L G +L HF+ GQ VD+ RW F G+ ASHG S+SHRS GSTG R PGK F + T +NV V +D AR L+ +RG +PGA G +V ++ Sbjct: 46 YTAVQLGFGQAKPKHVSKANKGHFARVKVEPKKKLVEFRVAEDAILEPGATLSAEHFLVGQKVDVTGTSKGKGFAGAMKRWNFAGLEASHGVSISHRSHGSTGNRQDPGKTFKNKKMAGHLGDERVTTQNVEVAHVDAARGLLMIRGSIPGAKGGYVLVR 205
BLAST of CX291249 vs. ExPASy Swiss-Prot
Match: RL3_METPB (50S ribosomal protein L3 OS=Methylobacterium populi (strain ATCC BAA-705 / NCIMB 13946 / BJ001) GN=rplC PE=3 SV=1) HSP 1 Score: 129.028 bits (323), Expect = 1.046e-29 Identity = 64/160 (40.00%), Postives = 92/160 (57.50%), Query Frame = 3 Query: 3 FFSLHVGCGQKKDKHMTKPEVGHFRAQGVPLKRKLREFPVTEDALLPIGTSLGVRHFIPGQYVDIXXXXXXXXXXXXXXRWGFKGMPASHGASLSHRSLGSTGQRDAPGKVFXXXXXXXXXXXXQRTVKNVWVYKIDPARNLMWVRGQVPGASGNFVFIK 482 + +L VG G+ K K++++ E G F V K+KL EF V+EDAL+P+G + HFIPGQ+VD+ RW F G+ A+HG S+SHRS+GSTG R PGK F + T +N+ V + DP R L+ V G VPG +G ++ ++ Sbjct: 46 YVALQVGVGKAKVKNVSQAERGRFAVAKVEPKKKLAEFRVSEDALIPVGAEITADHFIPGQFVDVTGTTTGKGFAGGMKRWNFGGLRATHGVSISHRSIGSTGGRQDPGKTFKNKKMPGHLGVERVTTQNLKVVRTDPERGLILVEGAVPGVAGGWIQVR 205
BLAST of CX291249 vs. ExPASy Swiss-Prot
Match: RL3_METEP (50S ribosomal protein L3 OS=Methylobacterium extorquens (strain PA1) GN=rplC PE=3 SV=1) HSP 1 Score: 129.028 bits (323), Expect = 1.046e-29 Identity = 64/160 (40.00%), Postives = 92/160 (57.50%), Query Frame = 3 Query: 3 FFSLHVGCGQKKDKHMTKPEVGHFRAQGVPLKRKLREFPVTEDALLPIGTSLGVRHFIPGQYVDIXXXXXXXXXXXXXXRWGFKGMPASHGASLSHRSLGSTGQRDAPGKVFXXXXXXXXXXXXQRTVKNVWVYKIDPARNLMWVRGQVPGASGNFVFIK 482 + +L VG G+ K K++++ E G F V K+KL EF V+EDAL+P+G + HFIPGQ+VD+ RW F G+ A+HG S+SHRS+GSTG R PGK F + T +N+ V + DP R L+ V G VPG +G ++ ++ Sbjct: 46 YVALQVGVGKAKVKNVSQAERGRFAVAKVEPKKKLAEFRVSEDALIPVGAEITADHFIPGQFVDVTGTSTGKGFAGGMKRWNFGGLRATHGVSISHRSIGSTGGRQDPGKTFKNKKMPGHLGVERVTTQNLKVVRTDPERGLILVEGAVPGVAGGWIQVR 205 The following BLAST results are available for this feature:
BLAST of CX291249 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >CX291249 ID=CX291249; Name=CX291249; organism=Citrus clementina; type=EST; length=484bpback to top |