CX291267

Overview
NameCX291267
Unique NameCX291267
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length472
Libraries
Library NameType
OF2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX291267_ssr34 microsatellite CX291267_ssr34:34..45. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of CX291267 vs. ExPASy Swiss-Prot
Match: LOX4_ARATH (Lipoxygenase 4, chloroplastic OS=Arabidopsis thaliana GN=LOX4 PE=2 SV=1)

HSP 1 Score: 270.781 bits (691), Expect = 2.148e-72
Identity = 127/158 (80.38%), Postives = 142/158 (89.87%), Query Frame = 2
Query:    2 VHQLVNHWLRTHACIEPFILAAHRQLSAMHPIYKLLDPHMRYTLEINALARQNLINADGVIESCFTPGRYCMEMSAAXYKN-WRFDKEGLPANLIRRGMAVPDPTQPHGLKLLIEDYPYAANGLLIWSAIEDWVCTYVSHYYPNSSQICDDKELQSWY 472
            VHQLVNHWLRTHAC+EPFILAAHRQLSAMHPI+KLLDPHMRYTLEINA+ARQ LI+ADGVIESCFT G+Y +E+S+A YKN WRFD EGLPA+LIRRGMAVPDPTQPHGLKLL+EDYPYA +GLL+WSAI+ WV TYV  YY NS+ I  D ELQ+WY
Sbjct:  579 VHQLVNHWLRTHACLEPFILAAHRQLSAMHPIFKLLDPHMRYTLEINAVARQTLISADGVIESCFTAGQYGLEISSAAYKNKWRFDMEGLPADLIRRGMAVPDPTQPHGLKLLVEDYPYANDGLLLWSAIQTWVRTYVERYYANSNLIQTDTELQAWY 736          
BLAST of CX291267 vs. ExPASy Swiss-Prot
Match: LOX3_ARATH (Lipoxygenase 3, chloroplastic OS=Arabidopsis thaliana GN=LOX3 PE=2 SV=1)

HSP 1 Score: 266.929 bits (681), Expect = 3.102e-71
Identity = 128/158 (81.01%), Postives = 139/158 (87.97%), Query Frame = 2
Query:    2 VHQLVNHWLRTHACIEPFILAAHRQLSAMHPIYKLLDPHMRYTLEINALARQNLINADGVIESCFTPGRYCMEMSAAXYK-NWRFDKEGLPANLIRRGMAVPDPTQPHGLKLLIEDYPYAANGLLIWSAIEDWVCTYVSHYYPNSSQICDDKELQSWY 472
            VHQLVNHWLRTHAC+EPFILAAHRQLSAMHPI+KLLDPHMRYTLEINALARQ+LI+ADGVIE  FT G Y MEMSAA YK +WRFD EGLPA+LIRRGMA+PD TQPHGLKLLIEDYPYA +GLL+WSAI+ WV TYV  YYPN + I  D ELQSWY
Sbjct:  572 VHQLVNHWLRTHACLEPFILAAHRQLSAMHPIFKLLDPHMRYTLEINALARQSLISADGVIEGGFTAGAYGMEMSAAAYKSSWRFDMEGLPADLIRRGMAIPDATQPHGLKLLIEDYPYANDGLLLWSAIQTWVRTYVERYYPNPNLIKTDSELQSWY 729          
BLAST of CX291267 vs. ExPASy Swiss-Prot
Match: LOX5_ORYSJ (Putative lipoxygenase 5 OS=Oryza sativa subsp. japonica GN=Os04g0447100 PE=3 SV=2)

HSP 1 Score: 251.521 bits (641), Expect = 1.349e-66
Identity = 118/158 (74.68%), Postives = 134/158 (84.81%), Query Frame = 2
Query:    2 VHQLVNHWLRTHACIEPFILAAHRQLSAMHPIYKLLDPHMRYTLEINALARQNLINADGVIESCFTPGRYCMEMSAAXYKN-WRFDKEGLPANLIRRGMAVPDPTQPHGLKLLIEDYPYAANGLLIWSAIEDWVCTYVSHYYPNSSQICDDKELQSWY 472
            VHQL+NHWLRTHAC+EPFI+AAHRQ+SAMHPI+KLL PHMRYTL+INALARQ LIN DGVIES FTPG  CMEMSA  Y+  WR D+EGLPA+LIRRGMAV DP+QPHGL+LLIEDYPYAA+GLL+WSAI  W   YV+ YYP+   +  D ELQSWY
Sbjct:  553 VHQLINHWLRTHACMEPFIIAAHRQMSAMHPIFKLLKPHMRYTLKINALARQILINGDGVIESGFTPGNVCMEMSAFAYRELWRLDQEGLPADLIRRGMAVEDPSQPHGLRLLIEDYPYAADGLLLWSAISRWCEAYVAAYYPSDEAVQADYELQSWY 710          
BLAST of CX291267 vs. ExPASy Swiss-Prot
Match: LOX6_ORYSJ (Probable lipoxygenase 6 OS=Oryza sativa subsp. japonica GN=Os03g0179900 PE=2 SV=2)

HSP 1 Score: 245.743 bits (626), Expect = 7.401e-65
Identity = 117/158 (74.05%), Postives = 134/158 (84.81%), Query Frame = 2
Query:    2 VHQLVNHWLRTHACIEPFILAAHRQLSAMHPIYKLLDPHMRYTLEINALARQNLINADGVIESCFTPGRYCMEMSAAXYKN-WRFDKEGLPANLIRRGMAVPDPTQPHGLKLLIEDYPYAANGLLIWSAIEDWVCTYVSHYYPNSSQICDDKELQSWY 472
            VHQLVNHWLRTHA +EPFILAAHR +SAMHPI+KLL PHMRYTLEINALARQ+LINADGVIESCFTPG    E+SAA Y+N WRFD EGLP++LIRRG+AV D TQPHG++LLIEDYPYA +GLL+WSAI  WV +YV  YYP++  +  D ELQ WY
Sbjct:  567 VHQLVNHWLRTHATMEPFILAAHRHMSAMHPIFKLLHPHMRYTLEINALARQSLINADGVIESCFTPGPVSGEISAAYYRNHWRFDLEGLPSDLIRRGVAVEDATQPHGVRLLIEDYPYANDGLLLWSAIRSWVESYVQLYYPDAGTVQCDLELQGWY 724          
BLAST of CX291267 vs. ExPASy Swiss-Prot
Match: LOX6_ARATH (Lipoxygenase 6, choloroplastic OS=Arabidopsis thaliana GN=LOX6 PE=1 SV=1)

HSP 1 Score: 228.024 bits (580), Expect = 1.597e-59
Identity = 105/158 (66.46%), Postives = 131/158 (82.91%), Query Frame = 2
Query:    2 VHQLVNHWLRTHACIEPFILAAHRQLSAMHPIYKLLDPHMRYTLEINALARQNLINADGVIESCFTPGRYCMEMSAAXYKN-WRFDKEGLPANLIRRGMAVPDPTQPHGLKLLIEDYPYAANGLLIWSAIEDWVCTYVSHYYPNSSQICDDKELQSWY 472
            VHQLVNHWLRTHA +EP+I+A +RQLS MHP+YKLL PHMRYTLEINA AR++LIN  G+IESCFTPG+Y ME+S+A YK+ WRFD EGLPA+L+RRGMA  D +   G++L+I+DYPYAA+GLLIW AI+D V +YV H+Y +S  I  D ELQ+W+
Sbjct:  569 VHQLVNHWLRTHASMEPYIIATNRQLSTMHPVYKLLHPHMRYTLEINARARKSLINGGGIIESCFTPGKYAMELSSAAYKSMWRFDMEGLPADLVRRGMAEEDSSAECGVRLVIDDYPYAADGLLIWKAIKDLVESYVKHFYSDSKSITSDLELQAWW 726          
BLAST of CX291267 vs. ExPASy Swiss-Prot
Match: LOX2_ARATH (Lipoxygenase 2, chloroplastic OS=Arabidopsis thaliana GN=LOX2 PE=1 SV=1)

HSP 1 Score: 225.713 bits (574), Expect = 7.926e-59
Identity = 98/157 (62.42%), Postives = 128/157 (81.53%), Query Frame = 2
Query:    5 HQLVNHWLRTHACIEPFILAAHRQLSAMHPIYKLLDPHMRYTLEINALARQNLINADGVIESCFTPGRYCMEMSAAXY-KNWRFDKEGLPANLIRRGMAVPDPTQPHGLKLLIEDYPYAANGLLIWSAIEDWVCTYVSHYYPNSSQICDDKELQSWY 472
            HQL++HWLRTHAC EP+I+AA+RQLSAMHPIY+LL PH RYT+EINA ARQ+L+N  G+IE+CF PG+Y +E+S+A Y K WRFD+EGLPA+LI+RG+A  D T  HG++L I DYP+A +GL++W AI++WV  YV HYYP+   I  D+ELQ W+
Sbjct:  549 HQLISHWLRTHACTEPYIIAANRQLSAMHPIYRLLHPHFRYTMEINARARQSLVNGGGIIETCFWPGKYALELSSAVYGKLWRFDQEGLPADLIKRGLAEEDKTAEHGVRLTIPDYPFANDGLILWDAIKEWVTDYVKHYYPDEELITSDEELQGWW 705          
BLAST of CX291267 vs. ExPASy Swiss-Prot
Match: LOX2_SOYBN (Seed lipoxygenase-2 OS=Glycine max GN=LOX1.2 PE=2 SV=1)

HSP 1 Score: 213.772 bits (543), Expect = 3.117e-55
Identity = 97/156 (62.18%), Postives = 121/156 (77.56%), Query Frame = 2
Query:    5 HQLVNHWLRTHACIEPFILAAHRQLSAMHPIYKLLDPHMRYTLEINALARQNLINADGVIESCFTPGRYCMEMSAAXYKNWRFDKEGLPANLIRRGMAVPDPTQPHGLKLLIEDYPYAANGLLIWSAIEDWVCTYVSHYYPNSSQICDDKELQSWY 472
            HQL++HWL THA IEPFI+A +R LSA+HPIYKLL PH R T+ INALARQ+LINADG+IE  F P ++ +EMS+A YKNW F  + LPA+LI+RG+A+ DP+ PHGL+LLIEDYPYA +GL IW+AI+ WV  YVS YY     +  D ELQ W+
Sbjct:  522 HQLMSHWLNTHAVIEPFIIATNRHLSALHPIYKLLTPHYRDTMNINALARQSLINADGIIEKSFLPSKHSVEMSSAVYKNWVFTDQALPADLIKRGVAIKDPSAPHGLRLLIEDYPYAVDGLEIWAAIKTWVQEYVSLYYARDDDVKPDSELQQWW 677          
BLAST of CX291267 vs. ExPASy Swiss-Prot
Match: LOX4_ORYSJ (Probable lipoxygenase 4 OS=Oryza sativa subsp. japonica GN=Os03g0700700 PE=2 SV=1)

HSP 1 Score: 213.386 bits (542), Expect = 4.071e-55
Identity = 91/156 (58.33%), Postives = 123/156 (78.85%), Query Frame = 2
Query:    5 HQLVNHWLRTHACIEPFILAAHRQLSAMHPIYKLLDPHMRYTLEINALARQNLINADGVIESCFTPGRYCMEMSAAXYKNWRFDKEGLPANLIRRGMAVPDPTQPHGLKLLIEDYPYAANGLLIWSAIEDWVCTYVSHYYPNSSQICDDKELQSWY 472
            HQL++HWL THA IEPF++A +RQLS +HP++KLL PH R T+ INALARQ LINADG+ E    PG+Y +EMS+  YKNW+F ++ LP +L++RG+AVPDPT P+ ++LLI+DYPYA +GL+IW AIE WV  Y++ YYPN   +  D+ELQ+W+
Sbjct:  523 HQLISHWLNTHAVIEPFVIATNRQLSVVHPVHKLLSPHYRDTMNINALARQTLINADGIFEKTVFPGKYALEMSSVVYKNWKFTEQALPVDLVKRGVAVPDPTSPYNVRLLIKDYPYAVDGLVIWWAIERWVGEYLAIYYPNDGVLRGDEELQAWW 678          
BLAST of CX291267 vs. ExPASy Swiss-Prot
Match: LOXX_SOYBN (Seed lipoxygenase OS=Glycine max GN=LOX1.4 PE=1 SV=1)

HSP 1 Score: 213.001 bits (541), Expect = 5.317e-55
Identity = 94/156 (60.26%), Postives = 121/156 (77.56%), Query Frame = 2
Query:    5 HQLVNHWLRTHACIEPFILAAHRQLSAMHPIYKLLDPHMRYTLEINALARQNLINADGVIESCFTPGRYCMEMSAAXYKNWRFDKEGLPANLIRRGMAVPDPTQPHGLKLLIEDYPYAANGLLIWSAIEDWVCTYVSHYYPNSSQICDDKELQSWY 472
            HQLV+HWL THA +EPF +A +R LS +HPIYKLL PH R T+ IN LARQ+LINADG+IE  F PG+Y +EMS++ YKNW F  + LPA+L++RG+A+ DP+ PHGL+L+IEDYPYA +GL IW AI+ WV  YVS YYP  + +  D ELQ+W+
Sbjct:  520 HQLVSHWLNTHAVMEPFAIATNRHLSVLHPIYKLLYPHYRDTININGLARQSLINADGIIEKSFLPGKYSIEMSSSVYKNWVFTDQALPADLVKRGLAIEDPSAPHGLRLVIEDYPYAVDGLEIWDAIKTWVHEYVSLYYPTDAAVQQDTELQAWW 675          
BLAST of CX291267 vs. ExPASy Swiss-Prot
Match: LOX21_HORVU (Lipoxygenase 2.1, chloroplastic OS=Hordeum vulgare GN=LOX2.1 PE=1 SV=1)

HSP 1 Score: 211.846 bits (538), Expect = 1.184e-54
Identity = 98/158 (62.03%), Postives = 122/158 (77.22%), Query Frame = 2
Query:    2 VHQLVNHWLRTHACIEPFILAAHRQLSAMHPIYKLLDPHMRYTLEINALARQNLINADGVIESCFTPGRYCMEMSAAXY-KNWRFDKEGLPANLIRRGMAVPDPTQPHGLKLLIEDYPYAANGLLIWSAIEDWVCTYVSHYYPNSSQICDDKELQSWY 472
            VHQLV+HWLRTHAC EP+I+AA+RQLS MHP+Y+LL PH R+T+EINA AR  LINA G+IE  F PG Y +E+S+  Y + WRFD E LP +LIRRGMAV +P     L+L IEDYPYA +GLL+W AI+ W  TYV HYYP ++ I DD+ELQ+W+
Sbjct:  581 VHQLVSHWLRTHACTEPYIIAANRQLSQMHPVYRLLHPHFRFTMEINAQARAMLINAGGIIEGSFVPGEYSLELSSVAYDQQWRFDMEALPEDLIRRGMAVRNPNGE--LELAIEDYPYANDGLLVWDAIKQWALTYVQHYYPCAADIVDDEELQAWW 736          
The following BLAST results are available for this feature:
BLAST of CX291267 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 57
Match NameE-valueIdentityDescription
LOX4_ARATH2.148e-7280.38Lipoxygenase 4, chloroplastic OS=Arabidopsis thali... [more]
LOX3_ARATH3.102e-7181.01Lipoxygenase 3, chloroplastic OS=Arabidopsis thali... [more]
LOX5_ORYSJ1.349e-6674.68Putative lipoxygenase 5 OS=Oryza sativa subsp. jap... [more]
LOX6_ORYSJ7.401e-6574.05Probable lipoxygenase 6 OS=Oryza sativa subsp. jap... [more]
LOX6_ARATH1.597e-5966.46Lipoxygenase 6, choloroplastic OS=Arabidopsis thal... [more]
LOX2_ARATH7.926e-5962.42Lipoxygenase 2, chloroplastic OS=Arabidopsis thali... [more]
LOX2_SOYBN3.117e-5562.18Seed lipoxygenase-2 OS=Glycine max GN=LOX1.2 PE=2 ... [more]
LOX4_ORYSJ4.071e-5558.33Probable lipoxygenase 4 OS=Oryza sativa subsp. jap... [more]
LOXX_SOYBN5.317e-5560.26Seed lipoxygenase OS=Glycine max GN=LOX1.4 PE=1 SV... [more]
LOX21_HORVU1.184e-5462.03Lipoxygenase 2.1, chloroplastic OS=Hordeum vulgare... [more]

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Properties
Property NameValue
Genbank descriptionC03006A11SK OF2 Citrus clementina cDNA clone C03006A11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX291267 ID=CX291267; Name=CX291267; organism=Citrus clementina; type=EST; length=472bp
GGTGCACCAACTTGTTAACCATTGGTTACGTACGCATGCATGCATCGAGC
CTTTTATTCTAGCAGCACATAGACAATTGAGTGCAATGCACCCAATTTAC
AAGCTTTTGGATCCACATATGAGATACACATTGGAGATTAATGCTCTAGC
TAGGCAAAATTTAATCAATGCCGATGGTGTGATCGAGTCTTGCTTCACTC
CTGGCCGCTACTGCATGGAAATGAGCGCCGCCNCGTACAAAAATTGGCGG
TTTGACAAGGAAGGCCTCCCCGCAAATCTCATCCGCAGAGGCATGGCAGT
ACCTGACCCAACACAGCCACATGGTTTGAAGTTGCTAATTGAGGACTACC
CATACGCAGCAAACGGACTTCTAATTTGGTCAGCAATTGAGGATTGGGTG
TGCACTTATGTGAGCCATTACTACCCAAATTCAAGCCAAATTTGTGACGA
CAAAGAGCTACAATCATGGTAC
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