CX291277

Overview
NameCX291277
Unique NameCX291277
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length520
Libraries
Library NameType
OF2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig3132 contig Ccv1_Contig3132:291..810. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX291277 vs. ExPASy Swiss-Prot
Match: ATPG3_IPOBA (ATP synthase subunit gamma, mitochondrial OS=Ipomoea batatas GN=ATPC PE=1 SV=2)

HSP 1 Score: 303.908 bits (777), Expect = 2.907e-82
Identity = 151/173 (87.28%), Postives = 168/173 (97.11%), Query Frame = 2
Query:    2 MKMVAASKLRAIQVKAENSRGLWQPFTALLGDTPTVDAKKNVIVTISSDKGLCGGINSTAVKISKSLHKLNSGPDKENKYVILGEKAKAILVRDSKKDIELIITELQKNPLNYTQVSVLADDILKNVEFDALRIIYSKFHSVVSFLPTMATVLSPELVEREAESGGKLGELDS 520
            MKMVAASKLRAIQ +AENSRGLWQPFTALLGDTP+VD KKNVI+TISSDKGLCGGINST+VK S+++HKLNSGP+KENKYVILGEKAKA LVRDSKKDIELIITELQKNPLNYTQVSV+ADDILKNVEFDALRI+++KF SVVSF+PTM+TVLSPE+VERE+ESGGKLG+LDS
Sbjct:   68 MKMVAASKLRAIQTRAENSRGLWQPFTALLGDTPSVDVKKNVIITISSDKGLCGGINSTSVKTSRNIHKLNSGPEKENKYVILGEKAKAQLVRDSKKDIELIITELQKNPLNYTQVSVVADDILKNVEFDALRIVFNKFQSVVSFVPTMSTVLSPEVVERESESGGKLGDLDS 240          
BLAST of CX291277 vs. ExPASy Swiss-Prot
Match: ATPG3_ARATH (ATP synthase subunit gamma, mitochondrial OS=Arabidopsis thaliana GN=ATPC PE=1 SV=1)

HSP 1 Score: 278.87 bits (712), Expect = 1.002e-74
Identity = 134/173 (77.46%), Postives = 161/173 (93.06%), Query Frame = 2
Query:    2 MKMVAASKLRAIQVKAENSRGLWQPFTALLGDTPTVDAKKNVIVTISSDKGLCGGINSTAVKISKSLHKLNSGPDKENKYVILGEKAKAILVRDSKKDIELIITELQKNPLNYTQVSVLADDILKNVEFDALRIIYSKFHSVVSFLPTMATVLSPELVEREAESGGKLGELDS 520
            MKMVAASKLRA+Q +AENSRGLWQPFTALLGD P++D KK+V+VT+SSDKGLCGGINST VK+S++L+KLN+GP+KE ++VI+GEKAKAI+ RDSK DI L +TEL KNPLNY QVSVLADDILKNVEFDALRI+Y+KFHSVV+FLPT++TVLSPE++E+E+E GGKLGELDS
Sbjct:   65 MKMVAASKLRAVQGRAENSRGLWQPFTALLGDNPSIDVKKSVVVTLSSDKGLCGGINSTVVKVSRALYKLNAGPEKEVQFVIVGEKAKAIMFRDSKNDIVLSVTELNKNPLNYAQVSVLADDILKNVEFDALRIVYNKFHSVVAFLPTVSTVLSPEIIEKESEIGGKLGELDS 237          
BLAST of CX291277 vs. ExPASy Swiss-Prot
Match: ATPG_ROSDO (ATP synthase gamma chain OS=Roseobacter denitrificans (strain ATCC 33942 / OCh 114) GN=atpG PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 1.521e-14
Identity = 55/188 (29.26%), Postives = 96/188 (51.06%), Query Frame = 2
Query:    2 MKMVAASKLRAIQVKAENSRGLWQPFTALLGD---------------TPTVDAKKNVIVTISSDKGLCGGINSTAVKISKSLHKLNSGPDKENKYVILGEKAKAILVRD--SKKDIELIITELQKNPLNYTQVSVLADDILKNV---EFDALRIIYSKFHSVVSFLPTMATVLSPELVEREAESGGKL 505
            M+MVAA+KLR  Q  AE SR   + F A++                 + T   K  +++ ++S++GLCGG N+   K++++  +   G  K+ K + +G+K +  L RD  S     + +TE+++  ++Y     +A D+L      EFD   I Y+KF +VVS +PT   ++  +  ++E E    L
Sbjct:   24 MQMVAAAKLRRAQEAAEQSRPYTERFNAVMAGLAASVGGSDSAPKLLSGTGSDKVQLLIVMTSERGLCGGFNTNIAKLARAHAQKLQGEGKDVKILTVGKKGRDQLKRDLGSLFIGHVDLTEIKR--VSYVDAQGIAKDVLNRFDVGEFDVATIFYAKFVNVVSQIPTAQQIIPAKFEQQEGEEASTL 209          
BLAST of CX291277 vs. ExPASy Swiss-Prot
Match: ATPG_BOVIN (ATP synthase subunit gamma, mitochondrial OS=Bos taurus GN=ATP5C1 PE=1 SV=3)

HSP 1 Score: 74.3294 bits (181), Expect = 3.747e-13
Identity = 56/177 (31.64%), Postives = 93/177 (52.54%), Query Frame = 2
Query:    2 MKMVAASKLRAIQVKAENSRGLWQPFTALL--GDTPTV-DAKKNVIVTISSDKGLCGGINSTAVKISKSLHKLNSGPDKENKYVILGEKAKAILVRDSKKDIELIITELQKNPLNYTQVSVLADDILKN-VEFDALRIIYSKFHSVVSFLPTMATVLSPELVEREAESGGKLGELDS 520
            MKMVAA+K    + + + +R       AL    D  T  D KK++I+ +SSD+GLCG I+S+  K  KS     +   KE K + +G+K ++IL R       +   E+ + P  +   SV+A ++L +  EFD   II+++F SV+S+      + S + +   AES     ++D+
Sbjct:   48 MKMVAAAKYARAERELKPARVYGVGSLALYEKADIKTPEDKKKHLIIGVSSDRGLCGAIHSSVAKQMKSEAANLAAAGKEVKIIGVGDKIRSILHRTHSDQFLVTFKEVGRRPPTFGDASVIALELLNSGYEFDEGSIIFNRFRSVISYKTEEKPIFSLDTIS-SAESMSIYDDIDA 223          
BLAST of CX291277 vs. ExPASy Swiss-Prot
Match: ATPG_METEP (ATP synthase gamma chain OS=Methylobacterium extorquens (strain PA1) GN=atpG PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 8.347e-13
Identity = 53/187 (28.34%), Postives = 85/187 (45.45%), Query Frame = 2
Query:    2 MKMVAASKLRAIQVKAENSRGLWQPFTALLGD---------------TPTVDAKKNVIVTISSDKGLCGGINSTAVKISKSLHKLNSGPDKENKYVILGEKAKAILVRDSKKDIELIITELQKNPLNYTQVSVLADDILKNVE---FDALRIIYSKFHSVVSFLPTMATVLSPELVEREAESGGKLG 508
            M+MVAA+KLR  Q  AEN R   +    +LG+               T T   + +++V  + D+GL G  NS+  ++++          K  K + +G+K   +L R  +  I          P++Y   + +ADDIL   E   FD   + YS+F SV+S +PT   ++  EL   E  +    G
Sbjct:   24 MQMVAAAKLRRAQNAAENGRPYAERMAQVLGNLAGNLIGGVGAPRLLTGTGQDRVHLLVVCTGDRGLAGAFNSSIARLARDHANRLMADGKTVKIITIGKKGLDVLRRQFRDQIIASRDIRGNKPVDYPFAAEIADDILARFEAGEFDVATLFYSEFRSVISQIPTAQKLIPAELPTAEGAAATGAG 210          
BLAST of CX291277 vs. ExPASy Swiss-Prot
Match: ATPG_DINSH (ATP synthase gamma chain OS=Dinoroseobacter shibae (strain DFL 12) GN=atpG PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 8.347e-13
Identity = 54/186 (29.03%), Postives = 95/186 (51.08%), Query Frame = 2
Query:    2 MKMVAASKLRAIQVKAENSRGLWQPFTALL-------GDTP--------TVDAKKNVIVTISSDKGLCGGINSTAVKISKSLHKLNSGPDKENKYVILGEKAKAILVRDSKKDIELIITELQKNPLNYTQVSVLADDILKNV---EFDALRIIYSKFHSVVSFLPTMATVLSPELVEREAESGGKL 505
            M+MVAA+KLR  Q  AE SR   + F A+L       GD+         T   + +++V +++++GLCGG NS+  K++++  +      K  K + +G+K +  L RD  K     +   +   ++Y   + +A D+L      EFD   I +++F SV+S +PT   ++ P   E +A++   L
Sbjct:   24 MQMVAAAKLRRAQDAAEASRPYTERFNAVLAGLAASVGDSDSGPRLLVGTGSDQTHLLVVMTAERGLCGGFNSSIAKLARAHAEKLVAQGKTVKILTVGKKGREQLKRDLSKHFIGHVDLSEVKRVSYDNAADIAADVLGRFDAGEFDVATIFFNRFQSVISQIPTAQQII-PASFEGDADADATL 208          
BLAST of CX291277 vs. ExPASy Swiss-Prot
Match: ATPG_METC4 (ATP synthase gamma chain OS=Methylobacterium chloromethanicum (strain CM4 / NCIMB 13688) GN=atpG PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.090e-12
Identity = 53/187 (28.34%), Postives = 85/187 (45.45%), Query Frame = 2
Query:    2 MKMVAASKLRAIQVKAENSRGLWQPFTALLGD---------------TPTVDAKKNVIVTISSDKGLCGGINSTAVKISKSLHKLNSGPDKENKYVILGEKAKAILVRDSKKDIELIITELQKNPLNYTQVSVLADDILKNVE---FDALRIIYSKFHSVVSFLPTMATVLSPELVEREAESGGKLG 508
            M+MVAA+KLR  Q  AEN R   +    +LG+               + T   + +++V  + D+GL G  NS+  ++++          K  K + +G+K   +L R  +  I          P++Y   + +ADDIL   E   FD   + YS+F SV+S +PT   ++  EL   E  S    G
Sbjct:   24 MQMVAAAKLRRAQNAAENGRPYAERMAQVLGNLAGNLIGGVGAPRLLSGTGQDRVHLLVVCTGDRGLAGAFNSSIARLARDHANRLMADGKTVKIITIGKKGLDVLRRQFRDQIIASRDIRGNKPVDYPFAAEIADDILARFEAGEFDVATLFYSEFRSVISQIPTAQKLIPAELPTAEGASATGAG 210          
BLAST of CX291277 vs. ExPASy Swiss-Prot
Match: ATPG_METPB (ATP synthase gamma chain OS=Methylobacterium populi (strain ATCC BAA-705 / NCIMB 13946 / BJ001) GN=atpG PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 3.172e-12
Identity = 50/184 (27.17%), Postives = 86/184 (46.74%), Query Frame = 2
Query:    2 MKMVAASKLRAIQVKAENSRGLWQPFTALLGD---------------TPTVDAKKNVIVTISSDKGLCGGINSTAVKISKSLHKLNSGPDKENKYVILGEKAKAILVRDSKKDIELIITELQKNPLNYTQVSVLADDILKNVE---FDALRIIYSKFHSVVSFLPTMATVLSPELVEREAESGG 499
            M+MVAA+KLR  Q  AEN R   +   ++L +               + T   + +++V  + D+GL G  NS+  ++++          K  K + +G+K   +L R  +  I          P++Y   + +ADDIL   E   FD   + YS+F SV+S +PT   ++  EL + +  + G
Sbjct:   24 MQMVAAAKLRRAQNAAENGRPYAEKMASVLANLAGNLIGGVGAPRLLSGTGQDRVHLLVVCTGDRGLAGAFNSSIARLARDHANRLMAEGKTVKIMTVGKKGLDVLRRQFRDQIIASRDIRGNKPVDYPFAAEIADDILARFEAGEFDVATLFYSEFRSVISQIPTAQKIIPAELPQTDGAAKG 207          
BLAST of CX291277 vs. ExPASy Swiss-Prot
Match: ATPG_METNO (ATP synthase gamma chain OS=Methylobacterium nodulans (strain ORS2060 / LMG 21967) GN=atpG PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 3.172e-12
Identity = 47/175 (26.86%), Postives = 87/175 (49.71%), Query Frame = 2
Query:    2 MKMVAASKLRAIQVKAENSRGLWQPFTALLGD-----TPTVDAKK----------NVIVTISSDKGLCGGINSTAVKISKSLHKLNSGPDKENKYVILGEKAKAILVRDSKKDIELIITELQKNPLNYTQVSVLADDILKNV---EFDALRIIYSKFHSVVSFLPTMATVLSPEL 472
            M+MVAA+KLR  Q  AEN+R   +   A+LG+     TP  +  +          +++V  ++++GLCG  NS+  ++++   +      K  K + +G+K   IL R+ +  I  +I       L +     + +++L      EFD   + YS+F SV++ +PT   ++  E+
Sbjct:   24 MQMVAAAKLRRAQNAAENARPYAERMAAVLGNLATNLTPGAETPRLLAGTGADRVHLLVVCTAERGLCGAFNSSIARLARDHARRLVAEGKTVKIICVGKKGYDILRREFRDQIVELIELRGVRQLGFENAEAVTENLLNRFEAGEFDIATLFYSRFRSVIAQVPTAQQIIPAEI 198          
BLAST of CX291277 vs. ExPASy Swiss-Prot
Match: ATPG_RHOCS (ATP synthase gamma chain OS=Rhodospirillum centenum (strain ATCC 51521 / SW) GN=atpG PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 5.410e-12
Identity = 52/184 (28.26%), Postives = 88/184 (47.83%), Query Frame = 2
Query:    2 MKMVAASKLRAIQVKAENSRGLWQPFTALLGD---------------TPTVDAKKNVIVTISSDKGLCGGINSTAVKISKSLHKLNSGPDKENKYVILGEKAKAILVRDSKKDIELIITELQKNPLNYTQVSVLADDILKNV---EFDALRIIYSKFHSVVSFLPTMATVL--SPELVEREAES 493
            MKMVAASKLR  Q +AE  R        +L                 T T   + +++V ++SD+GLCGG NST V+ ++   K  +G  +  K + +G K + +L R+    I     ++ +  L++     +   +L+     EFD   +IY+KF S ++ + T   V+  +P +    AE+
Sbjct:   24 MKMVAASKLRRAQEQAEAGRPFADRMARMLASLAANVSGATGGPRLMTGTGSDQVHLLVVVTSDRGLCGGFNSTIVREARRTIKRLTGEGRTVKLLCVGRKGRDLLRREYAGMIVHSFEDVGRRRLSFADADRITAKVLELFEAGEFDVATVIYNKFRSAITQVVTAQQVIPFAPAVATEPAET 207          
The following BLAST results are available for this feature:
BLAST of CX291277 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 27
Match NameE-valueIdentityDescription
ATPG3_IPOBA2.907e-8287.28ATP synthase subunit gamma, mitochondrial OS=Ipomo... [more]
ATPG3_ARATH1.002e-7477.46ATP synthase subunit gamma, mitochondrial OS=Arabi... [more]
ATPG_ROSDO1.521e-1429.26ATP synthase gamma chain OS=Roseobacter denitrific... [more]
ATPG_BOVIN3.747e-1331.64ATP synthase subunit gamma, mitochondrial OS=Bos t... [more]
ATPG_METEP8.347e-1328.34ATP synthase gamma chain OS=Methylobacterium extor... [more]
ATPG_DINSH8.347e-1329.03ATP synthase gamma chain OS=Dinoroseobacter shibae... [more]
ATPG_METC41.090e-1228.34ATP synthase gamma chain OS=Methylobacterium chlor... [more]
ATPG_METPB3.172e-1227.17ATP synthase gamma chain OS=Methylobacterium popul... [more]
ATPG_METNO3.172e-1226.86ATP synthase gamma chain OS=Methylobacterium nodul... [more]
ATPG_RHOCS5.410e-1228.26ATP synthase gamma chain OS=Rhodospirillum centenu... [more]

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Properties
Property NameValue
Genbank descriptionC03006B10SK OF2 Citrus clementina cDNA clone C03006B10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX291277 ID=CX291277; Name=CX291277; organism=Citrus clementina; type=EST; length=520bp
TATGAAGATGGTTGCAGCCTCAAAGTTAAGAGCAATTCAAGTTAAAGCTG
AAAATTCCCGTGGTCTGTGGCAGCCATTCACTGCACTTCTTGGTGACACT
CCCACTGTTGATGCTAAGAAGAATGTTATTGTGACCATCTCTTCTGACAA
AGGTCTATGTGGTGGAATTAACTCTACTGCAGTTAAGATAAGCAAGAGTT
TGCACAAGTTGAATTCTGGTCCCGACAAAGAAAACAAATACGTCATCTTG
GGAGAGAAGGCAAAGGCAATATTAGTACGTGACTCAAAGAAAGATATTGA
ACTCATCATAACTGAGTTACAGAAAAATCCTCTCAATTATACCCAGGTTT
CCGTTCTTGCAGATGATATCTTAAAGAATGTAGAATTTGATGCTTTGAGG
ATTATCTATAGCAAGTTCCATTCTGTGGTCTCCTTTCTGCCGACAATGGC
AACTGTATTATCGCCTGAGCTTGTGGAGAGAGAAGCCGAATCTGGGGGAA
AGCTTGGTGAGCTAGACTCC
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