CX291297

Overview
NameCX291297
Unique NameCX291297
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length235
Libraries
Library NameType
OF2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig26 contig Ccv1_Contig26:1303..1537. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX291297 vs. ExPASy Swiss-Prot
Match: RUBB_BRANA (RuBisCO large subunit-binding protein subunit beta, chloroplastic OS=Brassica napus PE=2 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 4.246e-30
Identity = 68/77 (88.31%), Postives = 70/77 (90.91%), Query Frame = 1
Query:    4 GTRSTQDAVSKRVAHIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEG 234
            G  STQDAV KRV  I+ LIE AEQDYE+EKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEG
Sbjct:  388 GDGSTQDAVQKRVTQIKNLIEQAEQDYEKEKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEG 464          
BLAST of CX291297 vs. ExPASy Swiss-Prot
Match: RUBB_ARATH (RuBisCO large subunit-binding protein subunit beta, chloroplastic OS=Arabidopsis thaliana GN=At1g55490 PE=1 SV=3)

HSP 1 Score: 129.798 bits (325), Expect = 4.246e-30
Identity = 68/77 (88.31%), Postives = 70/77 (90.91%), Query Frame = 1
Query:    4 GTRSTQDAVSKRVAHIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEG 234
            G  STQDAV KRV  I+ LIE AEQDYE+EKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEG
Sbjct:  388 GDGSTQDAVKKRVTQIKNLIEQAEQDYEKEKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEG 464          
BLAST of CX291297 vs. ExPASy Swiss-Prot
Match: RUBB_SECCE (RuBisCO large subunit-binding protein subunit beta, chloroplastic (Fragment) OS=Secale cereale GN=CPN60 PE=2 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 4.695e-29
Identity = 66/77 (85.71%), Postives = 71/77 (92.21%), Query Frame = 1
Query:    4 GTRSTQDAVSKRVAHIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEG 234
            G  STQ+ V+KRVA I+ LIE AEQDYE+EKLNERIAKL+GGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEG
Sbjct:  287 GDGSTQEEVTKRVAQIKNLIEAAEQDYEKEKLNERIAKLAGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEG 363          
BLAST of CX291297 vs. ExPASy Swiss-Prot
Match: RUBB_PEA (RuBisCO large subunit-binding protein subunit beta, chloroplastic OS=Pisum sativum PE=1 SV=2)

HSP 1 Score: 122.479 bits (306), Expect = 6.779e-28
Identity = 64/77 (83.12%), Postives = 71/77 (92.21%), Query Frame = 1
Query:    4 GTRSTQDAVSKRVAHIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEG 234
            G  STQ+AV+KRV+ I+  IE AEQ+YE+EKL+ERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEG
Sbjct:  382 GDGSTQEAVNKRVSQIKNQIEAAEQEYEKEKLSERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEG 458          
BLAST of CX291297 vs. ExPASy Swiss-Prot
Match: RUBC_CHLRE (RuBisCO large subunit-binding protein subunit beta-2 (Fragment) OS=Chlamydomonas reinhardtii PE=2 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 5.371e-25
Identity = 59/77 (76.62%), Postives = 63/77 (81.82%), Query Frame = 1
Query:    4 GTRSTQDAVSKRVAHIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEG 234
            G   TQ  V  RV  IR L    EQ+YE+EKLNERIA+LSGGVA+IQVGAQTETELKEKKLRVEDALNATKAAVEEG
Sbjct:   49 GDGRTQQQVEGRVKQIRNLAAETEQEYEKEKLNERIARLSGGVAIIQVGAQTETELKEKKLRVEDALNATKAAVEEG 125          
BLAST of CX291297 vs. ExPASy Swiss-Prot
Match: RUBB_CHLRE (RuBisCO large subunit-binding protein subunit beta-1 (Fragment) OS=Chlamydomonas reinhardtii PE=2 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 7.756e-24
Identity = 58/77 (75.32%), Postives = 63/77 (81.82%), Query Frame = 1
Query:    4 GTRSTQDAVSKRVAHIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEG 234
            G  ST   V+ RV  IR L    +QDYEREKL ERIA+LSGGVA+IQVGAQTETELKEKKLRVEDALNAT+AAVEEG
Sbjct:  218 GDGSTAADVAARVKQIRNLQMQTDQDYEREKLQERIARLSGGVAIIQVGAQTETELKEKKLRVEDALNATRAAVEEG 294          
BLAST of CX291297 vs. ExPASy Swiss-Prot
Match: CH601_SYNPW (60 kDa chaperonin 1 OS=Synechococcus sp. (strain WH7803) GN=groL1 PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 1.013e-23
Identity = 53/76 (69.74%), Postives = 68/76 (89.47%), Query Frame = 1
Query:    7 TRSTQDAVSKRVAHIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEG 234
            +  ++DAV++RVA IR  +EN++ +Y+REKLNERIAKL+GGVAVI+VGA TETELK +KLR+EDALNAT+AAVEEG
Sbjct:  333 SEDSRDAVAERVASIRRELENSDSEYDREKLNERIAKLAGGVAVIKVGAPTETELKNRKLRIEDALNATRAAVEEG 408          
BLAST of CX291297 vs. ExPASy Swiss-Prot
Match: CH602_SYNJB (60 kDa chaperonin 2 OS=Synechococcus sp. GN=groL2 PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 6.566e-23
Identity = 53/74 (71.62%), Postives = 64/74 (86.49%), Query Frame = 1
Query:   13 STQDAVSKRVAHIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEG 234
            ST+ AV KRVA IR  +E  + +Y+REKL ERIAKL+GGVAVI+VGA TETELK++KLR+EDALNAT+AAVEEG
Sbjct:  336 STKAAVEKRVAQIRKQLETTDSEYDREKLQERIAKLAGGVAVIKVGAATETELKDRKLRIEDALNATRAAVEEG 409          
BLAST of CX291297 vs. ExPASy Swiss-Prot
Match: CH601_SYNJA (60 kDa chaperonin 1 OS=Synechococcus sp. (strain JA-3-3Ab) GN=groL1 PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 6.566e-23
Identity = 53/74 (71.62%), Postives = 64/74 (86.49%), Query Frame = 1
Query:   13 STQDAVSKRVAHIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEG 234
            ST+ AV KRVA IR  +E  + +Y+REKL ERIAKL+GGVAVI+VGA TETELK++KLR+EDALNAT+AAVEEG
Sbjct:  336 STKAAVEKRVAQIRKQLETTDSEYDREKLQERIAKLAGGVAVIKVGAATETELKDRKLRIEDALNATRAAVEEG 409          
BLAST of CX291297 vs. ExPASy Swiss-Prot
Match: CH60_CARHZ (60 kDa chaperonin OS=Carboxydothermus hydrogenoformans (strain Z-2901 / DSM 6008) GN=groL PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 8.575e-23
Identity = 51/77 (66.23%), Postives = 64/77 (83.12%), Query Frame = 1
Query:    4 GTRSTQDAVSKRVAHIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEG 234
            G + + +A+ KR+A I+  IE    D++REKL ER+AKL+GGVAVIQVGA TETE+KEKKLR+EDALNAT+AAVEEG
Sbjct:  333 GGQGSPEAIEKRIAQIKKQIEETTSDFDREKLQERLAKLAGGVAVIQVGAATETEMKEKKLRIEDALNATRAAVEEG 409          
The following BLAST results are available for this feature:
BLAST of CX291297 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RUBB_BRANA4.246e-3088.31RuBisCO large subunit-binding protein subunit beta... [more]
RUBB_ARATH4.246e-3088.31RuBisCO large subunit-binding protein subunit beta... [more]
RUBB_SECCE4.695e-2985.71RuBisCO large subunit-binding protein subunit beta... [more]
RUBB_PEA6.779e-2883.12RuBisCO large subunit-binding protein subunit beta... [more]
RUBC_CHLRE5.371e-2576.62RuBisCO large subunit-binding protein subunit beta... [more]
RUBB_CHLRE7.756e-2475.32RuBisCO large subunit-binding protein subunit beta... [more]
CH601_SYNPW1.013e-2369.7460 kDa chaperonin 1 OS=Synechococcus sp. (strain W... [more]
CH602_SYNJB6.566e-2371.6260 kDa chaperonin 2 OS=Synechococcus sp. GN=groL2 ... [more]
CH601_SYNJA6.566e-2371.6260 kDa chaperonin 1 OS=Synechococcus sp. (strain J... [more]
CH60_CARHZ8.575e-2366.2360 kDa chaperonin OS=Carboxydothermus hydrogenofor... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC03006D09SK OF2 Citrus clementina cDNA clone C03006D09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX291297 ID=CX291297; Name=CX291297; organism=Citrus clementina; type=EST; length=235bp
TTCGGCACGAGGAGCACCCAGGATGCAGTGAGCAAACGAGTGGCGCACAT
CAGAACTCTAATTGAGAACGCTGAGCAAGACTATGAAAGGGAGAAGCTTA
ATGAAAGAATTGCTAAACTGTCAGGTGGTGTTGCTGTCATACAGGTTGGA
GCTCAAACTGAGACAGAGCTTAAAGAGAAGAAGTTGAGAGTCGAAGATGC
TCTTAATGCAACAAAGGCTGCAGTTGAGGAAGGTA
back to top