CX291299

Overview
NameCX291299
Unique NameCX291299
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length506
Libraries
Library NameType
OF2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CX291299 vs. ExPASy Swiss-Prot
Match: GAR2_SCHPO (Protein gar2 OS=Schizosaccharomyces pombe GN=gar2 PE=1 SV=2)

HSP 1 Score: 67.3958 bits (163), Expect = 4.312e-11
Identity = 40/135 (29.63%), Postives = 72/135 (53.33%), Query Frame = 3 
Query:    3 AVKRALALDGS-EMDGLFLKI----------QPYKATKAKRTSDFTPKIVEGYNRIYIGNLSWDITEEDLKKLFSDC-KISSLRFGTNKETGEFRGYAHVDFSDSLSLSMALKLDQEVVRGRPVKISCAVPPKKG 371
            A K A+A +G+ E+DG  + +          QPY     +R  +F  ++ E  + +++GNLS++ TE+DL   F  C  I S+R  T+ ++G  +G+ +V FSD  S    ++++   + GRP ++  + P   G
Sbjct:  316 AAKAAVAANGTKEIDGRMVNLDLSNPRPANPQPYAQ---QRAGNFGDQLSEPSDTVFVGNLSFNATEDDLSTAFGGCGDIQSIRLPTDPQSGRLKGFGYVTFSDIDSAKKCVEMNGHFIAGRPCRLDFSTPRTGG 447
The following BLAST results are available for this feature:
BLAST of CX291299 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
GAR2_SCHPO4.312e-1129.63Protein gar2 OS=Schizosaccharomyces pombe GN=gar2 ... [more]
back to top
Properties
Property NameValue
Genbank descriptionC03006D11SK OF2 Citrus clementina cDNA clone C03006D11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX291299 ID=CX291299; Name=CX291299; organism=Citrus clementina; type=EST; length=506bp
GCGCAGTGAAACGAGCCTTGGCTCTGGATGGATCTGAGATGGATGGACTT
TTCCTAAAAATTCAGCCCTACAAGGCCACTAAAGCCAAAAGGACATCTGA
TTTTACCCCAAAAATTGTGGAGGGCTATAACAGAATCTACATTGGGAACT
TGTCATGGGATATAACCGAGGAGGATCTGAAGAAACTTTTCTCAGATTGC
AAAATATCATCCTTGCGATTTGGAACCAACAAAGAAACTGGGGAATTCCG
AGGTTATGCCCATGTGGATTTTTCCGACAGTCTATCTTTGTCAATGGCAC
TGAAGTTGGATCAAGAGGTTGTGCGCGGAAGACCTGTCAAGATTAGTTGT
GCAGTGCCACCTAAGAAAGGAATAAACTCAAAATCAAGATCTCTGCCTTC
TAATAAGAGGGCGACTAGTAAAGTTACTGACAGTGCTGGCTTGGGGACTA
GTAACGATGCTGATAATTCTGGTGCAGTTACTAGTAATGTTGCTGCTAAT
GCTGGC
back to top