CX291308

Overview
NameCX291308
Unique NameCX291308
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length453
Libraries
Library NameType
OF2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig121 contig Ccv1_Contig121:568..1020. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX291308 vs. ExPASy Swiss-Prot
Match: OXC_ECOLI (Probable oxalyl-CoA decarboxylase OS=Escherichia coli (strain K12) GN=oxc PE=1 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 2.424e-35
Identity = 73/141 (51.77%), Postives = 97/141 (68.79%), Query Frame = 3
Query:   27 EPRCRLDAGTWGTMGVGLGYCIAAAIACPERLVVAVEGDSGFGFSAVEVETLVRYQLPVVVIVFNNGGVYGGDRRNPEEIAGPFKDDPAPTSFVPGAAYHKLMEAFRGKGYLVGTPEELKSALSESFAARKPAVINVTIDP 449
            +PR RLD GTWG MG+G+GY I A++      VVA+EGDS FGFS +E+ET+ RY LPV +++FNNGG+Y GD     +++G     P+PT  +  A Y KLM+AFRG GY V T +EL+ AL+    +RKP +INV IDP
Sbjct:  410 KPRRRLDCGTWGVMGIGMGYAIGASVTSGSP-VVAIEGDSAFGFSGMEIETICRYNLPVTIVIFNNGGIYRGD---GVDLSG--AGAPSPTDLLHHARYDKLMDAFRGVGYNVTTTDELRHALTTGIQSRKPTIINVVIDP 544          
BLAST of CX291308 vs. ExPASy Swiss-Prot
Match: OXC_ECO57 (Probable oxalyl-CoA decarboxylase OS=Escherichia coli O157:H7 GN=oxc PE=3 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 2.424e-35
Identity = 73/141 (51.77%), Postives = 97/141 (68.79%), Query Frame = 3
Query:   27 EPRCRLDAGTWGTMGVGLGYCIAAAIACPERLVVAVEGDSGFGFSAVEVETLVRYQLPVVVIVFNNGGVYGGDRRNPEEIAGPFKDDPAPTSFVPGAAYHKLMEAFRGKGYLVGTPEELKSALSESFAARKPAVINVTIDP 449
            +PR RLD GTWG MG+G+GY I A++      VVA+EGDS FGFS +E+ET+ RY LPV +++FNNGG+Y GD     +++G     P+PT  +  A Y KLM+AFRG GY V T +EL+ AL+    +RKP +INV IDP
Sbjct:  410 KPRRRLDCGTWGVMGIGMGYAIGASVTSGSP-VVAIEGDSAFGFSGMEIETICRYNLPVTIVIFNNGGIYRGD---GVDLSG--AGAPSPTDLLHHARYDKLMDAFRGVGYNVTTTDELRHALTTGIQSRKPTIINVVIDP 544          
BLAST of CX291308 vs. ExPASy Swiss-Prot
Match: OXC_OXAFO (Oxalyl-CoA decarboxylase OS=Oxalobacter formigenes GN=oxc PE=1 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 2.052e-34
Identity = 72/141 (51.06%), Postives = 95/141 (67.38%), Query Frame = 3
Query:   27 EPRCRLDAGTWGTMGVGLGYCIAAAIACPERLVVAVEGDSGFGFSAVEVETLVRYQLPVVVIVFNNGGVYGGDRRNPEEIAGPFKDDPAPTSFVPGAAYHKLMEAFRGKGYLVGTPEELKSALSESFAARKPAVINVTIDP 449
            +PR RLD+GTWG MG+G+GYC+AAA A   + V+AVEGDS FGFS +E+ET+ RY LPV VI+ NNGG+Y G+  +P+             + +    Y  +MEAF GKGY+  TP ELK+AL E+ A+ KP +IN  IDP
Sbjct:  415 KPRKRLDSGTWGVMGIGMGYCVAAA-AVTGKPVIAVEGDSAFGFSGMELETICRYNLPVTVIIMNNGGIYKGNEADPQ-------PGVISCTRLTRGRYDMMMEAFGGKGYVANTPAELKAALEEAVASGKPCLINAMIDP 547          
BLAST of CX291308 vs. ExPASy Swiss-Prot
Match: HACL1_HUMAN (2-hydroxyacyl-CoA lyase 1 OS=Homo sapiens GN=HACL1 PE=1 SV=2)

HSP 1 Score: 137.117 bits (344), Expect = 3.276e-32
Identity = 74/154 (48.05%), Postives = 101/154 (65.58%), Query Frame = 3
Query:   12 VLVQTEPRCRLDAGTWGTMGVGLGYCIAAAIACPERL----VVAVEGDSGFGFSAVEVETLVRYQLPVVVIVFNNGGVYGGDRRNPEEIAGPFKDDPA---PTSFVPGAAYHKLMEAFRGKGYLVGTPEELKSALSESFA-ARKPAVINVTIDP 449
            VL    PR RLDAGT+GTMGVGLG+ IAAA+   +R     ++ VEGDS FGFS +EVET+ RY LP++++V NN G+Y G   +  +    F+D  A   P   +P + Y ++M AF GKGY V TPEEL+ +L +S A   KP++IN+ I+P
Sbjct:  408 VLQNYLPRHRLDAGTFGTMGVGLGFAIAAAVVAKDRSPGQWIICVEGDSAFGFSGMEVETICRYNLPIILLVVNNNGIYQGFDTDTWKEMLKFQDATAVVPPMCLLPNSHYEQVMTAFGGKGYFVQTPEELQKSLRQSLADTTKPSLINIMIEP 561          
BLAST of CX291308 vs. ExPASy Swiss-Prot
Match: HACL1_RAT (2-hydroxyacyl-CoA lyase 1 OS=Rattus norvegicus GN=Hacl1 PE=1 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 8.921e-30
Identity = 71/154 (46.10%), Postives = 96/154 (62.34%), Query Frame = 3
Query:   12 VLVQTEPRCRLDAGTWGTMGVGLGYCIAAAIACPERL----VVAVEGDSGFGFSAVEVETLVRYQLPVVVIVFNNGGVYGGDRRNPEEIAGPFKDDPA---PTSFVPGAAYHKLMEAFRGKGYLVGTPEELKSALSESFA-ARKPAVINVTIDP 449
            VL    PR RLDAG++GTMGVGLG+ IAAA+   ER     V+ VEGDS FGFS +EVET+ RY LP++++V NN G+Y G   +       F+       P   +P + Y ++M AF GKGY V TPEEL+ +L ++     KP +IN+ I+P
Sbjct:  411 VLQNYLPRHRLDAGSFGTMGVGLGFAIAAAVVAKERSPGQRVICVEGDSAFGFSGMEVETICRYNLPIIILVVNNNGIYQGFDADTWGKILNFQGTATTIPPMCLLPNSHYEQVMTAFGGKGYFVQTPEELQDSLRQALKDTSKPCLINIMIEP 564          
BLAST of CX291308 vs. ExPASy Swiss-Prot
Match: HACL1_MOUSE (2-hydroxyacyl-CoA lyase 1 OS=Mus musculus GN=Hacl1 PE=1 SV=2)

HSP 1 Score: 128.642 bits (322), Expect = 1.165e-29
Identity = 68/148 (45.95%), Postives = 96/148 (64.86%), Query Frame = 3
Query:   30 PRCRLDAGTWGTMGVGLGYCIAAAIACPERL----VVAVEGDSGFGFSAVEVETLVRYQLPVVVIVFNNGGVYGGDRRNPEEIAGPFKDDPA---PTSFVPGAAYHKLMEAFRGKGYLVGTPEELKSALSESFA-ARKPAVINVTIDP 449
            PR RLDAG++GTMGVGLG+ IAAA+   +R     V+ VEGDS FGFS +EVET+ RY LP++++V NN G+Y G   +  E    F++      P   +P + Y ++M AF GKGY V TPEEL+ +L ++     KP ++N+ I+P
Sbjct:  417 PRHRLDAGSFGTMGVGLGFAIAAALVAKDRSPGQRVICVEGDSAFGFSGMEVETICRYNLPIILLVVNNNGIYQGFDADTWEKMLHFQEAATTVPPMCLLPNSHYEQVMTAFGGKGYFVRTPEELQHSLRQALQDTSKPCLLNIMIEP 564          
BLAST of CX291308 vs. ExPASy Swiss-Prot
Match: YGK4_SCHPO (Putative 2-hydroxyacyl-CoA lyase OS=Schizosaccharomyces pombe GN=SPBC725.04 PE=2 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 3.508e-26
Identity = 66/146 (45.21%), Postives = 89/146 (60.96%), Query Frame = 3
Query:   12 VLVQTEPRCRLDAGTWGTMGVGLGYCIAAAIACPERLVVAVEGDSGFGFSAVEVETLVRYQLPVVVIVFNNGGVYGGDRRNPEEIAGPFKDDPAPTSFVPGAAYHKLMEAFRGKGYLVGTPEELKSALSESFAARKPAVINVTIDP 449
            +L  T PR RLDAGT  TMGVG+GY IA+A A     +V VEGDS FGFSA+E+ET +R QL ++VIV NN GVY G   +  E        P  T+      Y ++ EA  GKG+ V   E+L+S+L +++     ++INV +DP
Sbjct:  404 LLEVTHPRGRLDAGTMSTMGVGMGYAIASAFAHSSDKIVVVEGDSAFGFSAMELETAIRNQLDLLVIVINNNGVYHGLDTDAYETLRDNHQLPT-TALGTSIRYDQICEACGGKGFFVKNEEDLRSSLRKAWQTSSVSLINVMVDP 548          
BLAST of CX291308 vs. ExPASy Swiss-Prot
Match: HACL1_DICDI (Probable 2-hydroxyacyl-CoA lyase 1 OS=Dictyostelium discoideum GN=hacl1 PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 2.970e-25
Identity = 66/150 (44.00%), Postives = 84/150 (56.00%), Query Frame = 3
Query:   21 QTEPRCRLDAGTWGTMGVGLGYCIAAAIACPERLVVAVEGDSGFGFSAVEVETLVRYQLPVVVIVFNNGGVYGG-----DRRNPEEIAGPFKDDPAPTSFVPGAAYHKLMEAFRGKGYLVGTPEELKSALSE--SFAARKPAVINVTIDP 449
            QT PR RLDAGT  TMGVG+GY +AA I  P+R VV ++GDS FGFSA+E+E  VRY+LP+V IV NN GVY G     D +            P PTS      Y  +M++F G GY + T   L     +  S     P ++N+ I P
Sbjct:  423 QTLPRSRLDAGTLATMGVGVGYSVAAQICFPDRSVVCIQGDSAFGFSAMEMEVAVRYKLPIVFIVLNNNGVYEGLESMSDPKYTSSTESASLHIP-PTSLSVDTKYELIMQSFGGTGYSISTISNLLDICKQIKSKQISLPTLLNIKIKP 571          
BLAST of CX291308 vs. ExPASy Swiss-Prot
Match: ILVG_MYCTU (Probable acetolactate synthase OS=Mycobacterium tuberculosis GN=ilvG PE=3 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 2.780e-23
Identity = 58/140 (41.43%), Postives = 84/140 (60.00%), Query Frame = 3
Query:   30 PRCRLDAGTWGTMGVGLGYCIAAAIACPERLVVAVEGDSGFGFSAVEVETLVRYQLPVVVIVFNNGGVYGGDRRNPEEIAGPFKDDPAPTSFVPGAAYHKLMEAFRGKGYLVGTPEELKSALSESFAARKPAVINVTIDP 449
            P C LD+G +G +G G GY +AA +A P+R VV ++GD  FGFS +E +TLVR+ + VV ++ NN G++G ++   E + G            PG  Y +++ A  G G LV  P EL+ AL  +FA+  PAV+NV  DP
Sbjct:  402 PGCWLDSGPFGCLGSGPGYALAAKLARPQRQVVLLQGDGAFGFSGMEWDTLVRHNVAVVSVIGNN-GIWGLEKHPMEALYG----YSVVAELRPGTRYDEVVRALGGHGELVSVPAELRPALERAFASGLPAVVNVLTDP 536          
BLAST of CX291308 vs. ExPASy Swiss-Prot
Match: ILVG_MYCBO (Probable acetolactate synthase OS=Mycobacterium bovis GN=ilvG PE=3 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 2.780e-23
Identity = 58/140 (41.43%), Postives = 84/140 (60.00%), Query Frame = 3
Query:   30 PRCRLDAGTWGTMGVGLGYCIAAAIACPERLVVAVEGDSGFGFSAVEVETLVRYQLPVVVIVFNNGGVYGGDRRNPEEIAGPFKDDPAPTSFVPGAAYHKLMEAFRGKGYLVGTPEELKSALSESFAARKPAVINVTIDP 449
            P C LD+G +G +G G GY +AA +A P+R VV ++GD  FGFS +E +TLVR+ + VV ++ NN G++G ++   E + G            PG  Y +++ A  G G LV  P EL+ AL  +FA+  PAV+NV  DP
Sbjct:  402 PGCWLDSGPFGCLGSGPGYALAAKLARPQRQVVLLQGDGAFGFSGMEWDTLVRHNVAVVSVIGNN-GIWGLEKHPMEALYG----YSVVAELRPGTRYDEVVRALGGHGELVSVPAELRPALERAFASGLPAVVNVLTDP 536          
The following BLAST results are available for this feature:
BLAST of CX291308 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 18
Match NameE-valueIdentityDescription
OXC_ECOLI2.424e-3551.77Probable oxalyl-CoA decarboxylase OS=Escherichia c... [more]
OXC_ECO572.424e-3551.77Probable oxalyl-CoA decarboxylase OS=Escherichia c... [more]
OXC_OXAFO2.052e-3451.06Oxalyl-CoA decarboxylase OS=Oxalobacter formigenes... [more]
HACL1_HUMAN3.276e-3248.052-hydroxyacyl-CoA lyase 1 OS=Homo sapiens GN=HACL1... [more]
HACL1_RAT8.921e-3046.102-hydroxyacyl-CoA lyase 1 OS=Rattus norvegicus GN=... [more]
HACL1_MOUSE1.165e-2945.952-hydroxyacyl-CoA lyase 1 OS=Mus musculus GN=Hacl1... [more]
YGK4_SCHPO3.508e-2645.21Putative 2-hydroxyacyl-CoA lyase OS=Schizosaccharo... [more]
HACL1_DICDI2.970e-2544.00Probable 2-hydroxyacyl-CoA lyase 1 OS=Dictyosteliu... [more]
ILVG_MYCTU2.780e-2341.43Probable acetolactate synthase OS=Mycobacterium tu... [more]
ILVG_MYCBO2.780e-2341.43Probable acetolactate synthase OS=Mycobacterium bo... [more]

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Properties
Property NameValue
Genbank descriptionC03006E08SK OF2 Citrus clementina cDNA clone C03006E08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX291308 ID=CX291308; Name=CX291308; organism=Citrus clementina; type=EST; length=453bp
ACGAGGGGGCAGTATTGGTTCAAACTGAGCCTCGTTGTAGGCTGGATGCA
GGGACTTGGGGGACCATGGGGGTTGGTTTAGGGTATTGCATTGCTGCTGC
AATAGCTTGCCCTGAACGGCTTGTGGTTGCTGTTGAAGGAGACTCTGGAT
TTGGGTTCAGTGCGGTTGAGGTTGAGACATTGGTTCGATATCAGTTGCCT
GTTGTCGTGATAGTTTTTAATAATGGTGGTGTGTATGGTGGAGATCGCAG
AAACCCTGAAGAAATTGCAGGGCCTTTCAAAGATGATCCTGCACCTACTT
CTTTTGTACCTGGTGCAGCTTATCATAAGCTCATGGAAGCTTTTAGGGGA
AAAGGATATTTAGTTGGGACACCAGAGGAACTCAAGTCAGCCCTTTCTGA
ATCGTTTGCTGCACGAAAGCCAGCTGTAATAAATGTTACTATTGATCCCT
ATG
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