CX291310

Overview
NameCX291310
Unique NameCX291310
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length535
Libraries
Library NameType
OF2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig5495 contig Ccv1_Contig5495:338..872. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX291310 vs. ExPASy Swiss-Prot
Match: ATPG3_IPOBA (ATP synthase subunit gamma, mitochondrial OS=Ipomoea batatas GN=ATPC PE=1 SV=2)

HSP 1 Score: 309.301 bits (791), Expect = 7.353e-84
Identity = 153/177 (86.44%), Postives = 171/177 (96.61%), Query Frame = 3
Query:    3 RGMKMVAASKLRAIQVKAENSRGLWQPFTALLGDTPTVDAKKNVIVTISSDKGLCGGINSTAVKISKSLHKLNSGPDKENKYVILGEKAKAILVRDSKKDIELIITELQKNPLNYTQVSVLADDILKNVEFDALRIIYSKFHSVVSFLPTMATVLSPELVEREAESGGKLGELDSYE 533
            + MKMVAASKLRAIQ +AENSRGLWQPFTALLGDTP+VD KKNVI+TISSDKGLCGGINST+VK S+++HKLNSGP+KENKYVILGEKAKA LVRDSKKDIELIITELQKNPLNYTQVSV+ADDILKNVEFDALRI+++KF SVVSF+PTM+TVLSPE+VERE+ESGGKLG+LDSYE
Sbjct:   66 KAMKMVAASKLRAIQTRAENSRGLWQPFTALLGDTPSVDVKKNVIITISSDKGLCGGINSTSVKTSRNIHKLNSGPEKENKYVILGEKAKAQLVRDSKKDIELIITELQKNPLNYTQVSVVADDILKNVEFDALRIVFNKFQSVVSFVPTMSTVLSPEVVERESESGGKLGDLDSYE 242          
BLAST of CX291310 vs. ExPASy Swiss-Prot
Match: ATPG3_ARATH (ATP synthase subunit gamma, mitochondrial OS=Arabidopsis thaliana GN=ATPC PE=1 SV=1)

HSP 1 Score: 284.263 bits (726), Expect = 2.533e-76
Identity = 136/177 (76.84%), Postives = 164/177 (92.66%), Query Frame = 3
Query:    3 RGMKMVAASKLRAIQVKAENSRGLWQPFTALLGDTPTVDAKKNVIVTISSDKGLCGGINSTAVKISKSLHKLNSGPDKENKYVILGEKAKAILVRDSKKDIELIITELQKNPLNYTQVSVLADDILKNVEFDALRIIYSKFHSVVSFLPTMATVLSPELVEREAESGGKLGELDSYE 533
            + MKMVAASKLRA+Q +AENSRGLWQPFTALLGD P++D KK+V+VT+SSDKGLCGGINST VK+S++L+KLN+GP+KE ++VI+GEKAKAI+ RDSK DI L +TEL KNPLNY QVSVLADDILKNVEFDALRI+Y+KFHSVV+FLPT++TVLSPE++E+E+E GGKLGELDSYE
Sbjct:   63 KAMKMVAASKLRAVQGRAENSRGLWQPFTALLGDNPSIDVKKSVVVTLSSDKGLCGGINSTVVKVSRALYKLNAGPEKEVQFVIVGEKAKAIMFRDSKNDIVLSVTELNKNPLNYAQVSVLADDILKNVEFDALRIVYNKFHSVVAFLPTVSTVLSPEIIEKESEIGGKLGELDSYE 239          
BLAST of CX291310 vs. ExPASy Swiss-Prot
Match: ATPG_ROSDO (ATP synthase gamma chain OS=Roseobacter denitrificans (strain ATCC 33942 / OCh 114) GN=atpG PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 7.255e-15
Identity = 56/197 (28.43%), Postives = 100/197 (50.76%), Query Frame = 3
Query:    3 RGMKMVAASKLRAIQVKAENSRGLWQPFTALLGD---------------TPTVDAKKNVIVTISSDKGLCGGINSTAVKISKSLHKLNSGPDKENKYVILGEKAKAILVRD--SKKDIELIITELQKNPLNYTQVSVLADDILKNV---EFDALRIIYSKFHSVVSFLPTMATVLSPELVEREAESGGKLGELDSYE 533
            + M+MVAA+KLR  Q  AE SR   + F A++                 + T   K  +++ ++S++GLCGG N+   K++++  +   G  K+ K + +G+K +  L RD  S     + +TE+++  ++Y     +A D+L      EFD   I Y+KF +VVS +PT   ++  +  ++E E    L + +  E
Sbjct:   22 KAMQMVAAAKLRRAQEAAEQSRPYTERFNAVMAGLAASVGGSDSAPKLLSGTGSDKVQLLIVMTSERGLCGGFNTNIAKLARAHAQKLQGEGKDVKILTVGKKGRDQLKRDLGSLFIGHVDLTEIKR--VSYVDAQGIAKDVLNRFDVGEFDVATIFYAKFVNVVSQIPTAQQIIPAKFEQQEGEEASTLFDYEPDE 216          
BLAST of CX291310 vs. ExPASy Swiss-Prot
Match: ATPG_BOVIN (ATP synthase subunit gamma, mitochondrial OS=Bos taurus GN=ATP5C1 PE=1 SV=3)

HSP 1 Score: 75.0998 bits (183), Expect = 2.334e-13
Identity = 56/179 (31.28%), Postives = 94/179 (52.51%), Query Frame = 3
Query:    3 RGMKMVAASKLRAIQVKAENSRGLWQPFTALL--GDTPTV-DAKKNVIVTISSDKGLCGGINSTAVKISKSLHKLNSGPDKENKYVILGEKAKAILVRDSKKDIELIITELQKNPLNYTQVSVLADDILKN-VEFDALRIIYSKFHSVVSFLPTMATVLSPELVEREAESGGKLGELDS 527
            + MKMVAA+K    + + + +R       AL    D  T  D KK++I+ +SSD+GLCG I+S+  K  KS     +   KE K + +G+K ++IL R       +   E+ + P  +   SV+A ++L +  EFD   II+++F SV+S+      + S + +   AES     ++D+
Sbjct:   46 KSMKMVAAAKYARAERELKPARVYGVGSLALYEKADIKTPEDKKKHLIIGVSSDRGLCGAIHSSVAKQMKSEAANLAAAGKEVKIIGVGDKIRSILHRTHSDQFLVTFKEVGRRPPTFGDASVIALELLNSGYEFDEGSIIFNRFRSVISYKTEEKPIFSLDTIS-SAESMSIYDDIDA 223          
BLAST of CX291310 vs. ExPASy Swiss-Prot
Match: ATPG_DINSH (ATP synthase gamma chain OS=Dinoroseobacter shibae (strain DFL 12) GN=atpG PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 3.048e-13
Identity = 55/195 (28.21%), Postives = 99/195 (50.77%), Query Frame = 3
Query:    3 RGMKMVAASKLRAIQVKAENSRGLWQPFTALL-------GDTP--------TVDAKKNVIVTISSDKGLCGGINSTAVKISKSLHKLNSGPDKENKYVILGEKAKAILVRDSKKDIELIITELQKNPLNYTQVSVLADDILKNV---EFDALRIIYSKFHSVVSFLPTMATVLSPELVEREAESGGKLGELDSYE 533
            + M+MVAA+KLR  Q  AE SR   + F A+L       GD+         T   + +++V +++++GLCGG NS+  K++++  +      K  K + +G+K +  L RD  K     +   +   ++Y   + +A D+L      EFD   I +++F SV+S +PT   ++ P   E +A++   L + +  E
Sbjct:   22 KAMQMVAAAKLRRAQDAAEASRPYTERFNAVLAGLAASVGDSDSGPRLLVGTGSDQTHLLVVMTAERGLCGGFNSSIAKLARAHAEKLVAQGKTVKILTVGKKGREQLKRDLSKHFIGHVDLSEVKRVSYDNAADIAADVLGRFDAGEFDVATIFFNRFQSVISQIPTAQQII-PASFEGDADADATLYDYEPSE 215          
BLAST of CX291310 vs. ExPASy Swiss-Prot
Match: ATPG_METEP (ATP synthase gamma chain OS=Methylobacterium extorquens (strain PA1) GN=atpG PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 5.199e-13
Identity = 53/189 (28.04%), Postives = 86/189 (45.50%), Query Frame = 3
Query:    3 RGMKMVAASKLRAIQVKAENSRGLWQPFTALLGD---------------TPTVDAKKNVIVTISSDKGLCGGINSTAVKISKSLHKLNSGPDKENKYVILGEKAKAILVRDSKKDIELIITELQKNPLNYTQVSVLADDILKNVE---FDALRIIYSKFHSVVSFLPTMATVLSPELVEREAESGGKLG 515
            + M+MVAA+KLR  Q  AEN R   +    +LG+               T T   + +++V  + D+GL G  NS+  ++++          K  K + +G+K   +L R  +  I          P++Y   + +ADDIL   E   FD   + YS+F SV+S +PT   ++  EL   E  +    G
Sbjct:   22 KAMQMVAAAKLRRAQNAAENGRPYAERMAQVLGNLAGNLIGGVGAPRLLTGTGQDRVHLLVVCTGDRGLAGAFNSSIARLARDHANRLMADGKTVKIITIGKKGLDVLRRQFRDQIIASRDIRGNKPVDYPFAAEIADDILARFEAGEFDVATLFYSEFRSVISQIPTAQKLIPAELPTAEGAAATGAG 210          
BLAST of CX291310 vs. ExPASy Swiss-Prot
Match: ATPG_METC4 (ATP synthase gamma chain OS=Methylobacterium chloromethanicum (strain CM4 / NCIMB 13688) GN=atpG PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 6.791e-13
Identity = 53/189 (28.04%), Postives = 86/189 (45.50%), Query Frame = 3
Query:    3 RGMKMVAASKLRAIQVKAENSRGLWQPFTALLGD---------------TPTVDAKKNVIVTISSDKGLCGGINSTAVKISKSLHKLNSGPDKENKYVILGEKAKAILVRDSKKDIELIITELQKNPLNYTQVSVLADDILKNVE---FDALRIIYSKFHSVVSFLPTMATVLSPELVEREAESGGKLG 515
            + M+MVAA+KLR  Q  AEN R   +    +LG+               + T   + +++V  + D+GL G  NS+  ++++          K  K + +G+K   +L R  +  I          P++Y   + +ADDIL   E   FD   + YS+F SV+S +PT   ++  EL   E  S    G
Sbjct:   22 KAMQMVAAAKLRRAQNAAENGRPYAERMAQVLGNLAGNLIGGVGAPRLLSGTGQDRVHLLVVCTGDRGLAGAFNSSIARLARDHANRLMADGKTVKIITIGKKGLDVLRRQFRDQIIASRDIRGNKPVDYPFAAEIADDILARFEAGEFDVATLFYSEFRSVISQIPTAQKLIPAELPTAEGASATGAG 210          
BLAST of CX291310 vs. ExPASy Swiss-Prot
Match: ATPG_METPB (ATP synthase gamma chain OS=Methylobacterium populi (strain ATCC BAA-705 / NCIMB 13946 / BJ001) GN=atpG PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.976e-12
Identity = 50/186 (26.88%), Postives = 87/186 (46.77%), Query Frame = 3
Query:    3 RGMKMVAASKLRAIQVKAENSRGLWQPFTALLGD---------------TPTVDAKKNVIVTISSDKGLCGGINSTAVKISKSLHKLNSGPDKENKYVILGEKAKAILVRDSKKDIELIITELQKNPLNYTQVSVLADDILKNVE---FDALRIIYSKFHSVVSFLPTMATVLSPELVEREAESGG 506
            + M+MVAA+KLR  Q  AEN R   +   ++L +               + T   + +++V  + D+GL G  NS+  ++++          K  K + +G+K   +L R  +  I          P++Y   + +ADDIL   E   FD   + YS+F SV+S +PT   ++  EL + +  + G
Sbjct:   22 KAMQMVAAAKLRRAQNAAENGRPYAEKMASVLANLAGNLIGGVGAPRLLSGTGQDRVHLLVVCTGDRGLAGAFNSSIARLARDHANRLMAEGKTVKIMTVGKKGLDVLRRQFRDQIIASRDIRGNKPVDYPFAAEIADDILARFEAGEFDVATLFYSEFRSVISQIPTAQKIIPAELPQTDGAAKG 207          
BLAST of CX291310 vs. ExPASy Swiss-Prot
Match: ATPG_METNO (ATP synthase gamma chain OS=Methylobacterium nodulans (strain ORS2060 / LMG 21967) GN=atpG PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.976e-12
Identity = 47/177 (26.55%), Postives = 88/177 (49.72%), Query Frame = 3
Query:    3 RGMKMVAASKLRAIQVKAENSRGLWQPFTALLGD-----TPTVDAKK----------NVIVTISSDKGLCGGINSTAVKISKSLHKLNSGPDKENKYVILGEKAKAILVRDSKKDIELIITELQKNPLNYTQVSVLADDILKNV---EFDALRIIYSKFHSVVSFLPTMATVLSPEL 479
            + M+MVAA+KLR  Q  AEN+R   +   A+LG+     TP  +  +          +++V  ++++GLCG  NS+  ++++   +      K  K + +G+K   IL R+ +  I  +I       L +     + +++L      EFD   + YS+F SV++ +PT   ++  E+
Sbjct:   22 KAMQMVAAAKLRRAQNAAENARPYAERMAAVLGNLATNLTPGAETPRLLAGTGADRVHLLVVCTAERGLCGAFNSSIARLARDHARRLVAEGKTVKIICVGKKGYDILRREFRDQIVELIELRGVRQLGFENAEAVTENLLNRFEAGEFDIATLFYSRFRSVIAQVPTAQQIIPAEI 198          
BLAST of CX291310 vs. ExPASy Swiss-Prot
Match: ATPG_RAT (ATP synthase subunit gamma, mitochondrial OS=Rattus norvegicus GN=Atp5c1 PE=1 SV=2)

HSP 1 Score: 71.2478 bits (173), Expect = 3.370e-12
Identity = 49/151 (32.45%), Postives = 80/151 (52.98%), Query Frame = 3
Query:    3 RGMKMVAASKLRAIQVKAENSRGLWQPFTALLGDTPTV---DAKKNVIVTISSDKGLCGGINSTAVKISKSLHKLNSGPDKENKYVILGEKAKAILVRDSKKDIELIITELQKNPLNYTQVSVLADDILKN-VEFDALRIIYSKFHSVVSF 443
            + MKMVAA+K    + + + +R       AL          D KK++I+ +SSD+GLCG I+S+  K  K+     +   KE   V +GEK K+IL R       +   ++ + P  +   SV+A ++L +  EFD   II+++F SV+S+
Sbjct:   21 KSMKMVAAAKYARAERELKPARVYGTGSLALYEKAEIKGPEDKKKHLIIGVSSDRGLCGAIHSSVAKQMKNDMAALTAAGKEVMIVGIGEKIKSILYRTHSDQFLVSFKDVGRKPPTFGDASVIALELLNSGYEFDEGSIIFNQFKSVISY 171          
The following BLAST results are available for this feature:
BLAST of CX291310 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 31
Match NameE-valueIdentityDescription
ATPG3_IPOBA7.353e-8486.44ATP synthase subunit gamma, mitochondrial OS=Ipomo... [more]
ATPG3_ARATH2.533e-7676.84ATP synthase subunit gamma, mitochondrial OS=Arabi... [more]
ATPG_ROSDO7.255e-1528.43ATP synthase gamma chain OS=Roseobacter denitrific... [more]
ATPG_BOVIN2.334e-1331.28ATP synthase subunit gamma, mitochondrial OS=Bos t... [more]
ATPG_DINSH3.048e-1328.21ATP synthase gamma chain OS=Dinoroseobacter shibae... [more]
ATPG_METEP5.199e-1328.04ATP synthase gamma chain OS=Methylobacterium extor... [more]
ATPG_METC46.791e-1328.04ATP synthase gamma chain OS=Methylobacterium chlor... [more]
ATPG_METPB1.976e-1226.88ATP synthase gamma chain OS=Methylobacterium popul... [more]
ATPG_METNO1.976e-1226.55ATP synthase gamma chain OS=Methylobacterium nodul... [more]
ATPG_RAT3.370e-1232.45ATP synthase subunit gamma, mitochondrial OS=Rattu... [more]

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Properties
Property NameValue
Genbank descriptionC03006E10SK OF2 Citrus clementina cDNA clone C03006E10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX291310 ID=CX291310; Name=CX291310; organism=Citrus clementina; type=EST; length=535bp
CACGAGGTATGAAGATGGTTGCAGCCTCAAAGTTAAGAGCAATTCAAGTT
AAAGCTGAAAATTCCCGTGGTCTGTGGCAGCCATTCACTGCACTTCTTGG
TGACACTCCCACTGTTGATGCTAAGAAGAATGTTATTGTGACCATCTCTT
CTGACAAAGGTCTATGTGGTGGAATTAACTCTACTGCAGTTAAGATAAGC
AAGAGTTTGCACAAGTTGAATTCTGGTCCCGACAAAGAAAACAAATACGT
CATCTTGGGAGAGAAGGCAAAGGCAATATTAGTACGTGACTCAAAGAAAG
ATATTGAACTCATCATAACTGAGTTACAGAAAAATCCTCTCAATTATACC
CAGGTTTCCGTTCTTGCAGATGATATCTTAAAGAATGTAGAATTTGATGC
TTTGAGGATTATCTATAGCAAGTTCCATTCTGTGGTCTCCTTTCTGCCGA
CAATGGCAACTGTATTATCGCCTGAGCTTGTGGAGAGAGAAGCCGAATCT
GGGGGAAAGCTTGGTGAGCTAGACTCCTATGAAAT
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