CX291359

Overview
NameCX291359
Unique NameCX291359
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length687
Libraries
Library NameType
OF2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig4725 contig Ccv1_Contig4725:82..768. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX291359 vs. ExPASy Swiss-Prot
Match: CCR4B_ARATH (Carbon catabolite repressor protein 4 homolog 2 OS=Arabidopsis thaliana GN=CCR4-2 PE=2 SV=2)

HSP 1 Score: 347.821 bits (891), Expect = 3.103e-95
Identity = 168/225 (74.67%), Postives = 193/225 (85.78%), Query Frame = 2
Query:    2 PAAVT-RSGGETWFEVGRSKTYTPSADDIGHVLKFECVVVDAETKLPVGHPNTLLTSRVIPAPSPSPRRLFPVNGSDMNMMGHIDSDGRISSTGTFSVLSYNILSDVYATSESYSYCPSWALSWAYRRQNLLREIIGYRADIVCLQEVQNDHFEEFFAPELDKHGYQALYKRKTNEVYNGNPHTIDGCATFFRRDRFSHVKKYEVEFIKAAQSLTDAILPVPRRR 673
            P+ +T ++GGET  EVG  KTYTP+ADDI HVLKFECVV +AETK  VGHP+T+LTSRVIPAPSPSPR+L PVNG+D   MGH+D D RI S G+F+VLSYNILSD  A+S+ YSYCP WALSW YRRQNLLREI+GYRAD+VCLQEVQ+DHF E FAPELDKHGYQALYKRKTNEV +G+   IDGCATFFRRDRFSHVKKY+VEF KAAQSLTDA++P  ++R
Sbjct:  158 PSNITQKNGGETLVEVGGCKTYTPTADDISHVLKFECVVANAETKQIVGHPSTILTSRVIPAPSPSPRKLIPVNGADG--MGHLDQDARIQSAGSFTVLSYNILSDTSASSDLYSYCPPWALSWPYRRQNLLREIVGYRADVVCLQEVQSDHFHEIFAPELDKHGYQALYKRKTNEVLSGSTSAIDGCATFFRRDRFSHVKKYDVEFNKAAQSLTDALIPQAQKR 380          
BLAST of CX291359 vs. ExPASy Swiss-Prot
Match: CCR4A_ARATH (Carbon catabolite repressor protein 4 homolog 1 OS=Arabidopsis thaliana GN=CCR4-1 PE=2 SV=1)

HSP 1 Score: 347.821 bits (891), Expect = 3.103e-95
Identity = 171/227 (75.33%), Postives = 197/227 (86.78%), Query Frame = 2
Query:    2 PAAVTR---SGGETWFEVGRSKTYTPSADDIGHVLKFECVVVDAETKLPVGHPNTLLTSRVIPAPSPSPRRLFPVNGSDMNMMGHIDSDGRISSTGTFSVLSYNILSDVYATSESYSYCPSWALSWAYRRQNLLREIIGYRADIVCLQEVQNDHFEEFFAPELDKHGYQALYKRKTNEVYNGNPHTIDGCATFFRRDRFSHVKKYEVEFIKAAQSLTDAILPVPRRR 673
            P+A+T+   +GGET  EVGRSKTYTP ADDI HVLKFECVVV+AETK  VG   T+LTSRVIPAPSPSPRRL  ++G+D+   GH+DS+GR  S GTF+VLSYNILSD YA+S+ YSYCP+WAL+W YRRQNLLREI+ YRADIVCLQEVQNDHFEEFF PELDKHGYQ L+KRKTNEV+ GN +TIDGCATFFRRDRFSHVKKYEVEF KAAQSLT+AI+PV +++
Sbjct:  153 PSAITQKTGAGGETLVEVGRSKTYTPMADDICHVLKFECVVVNAETKQNVGLSCTILTSRVIPAPSPSPRRLISISGTDVT--GHLDSNGRPLSMGTFTVLSYNILSDTYASSDIYSYCPTWALAWTYRRQNLLREIVKYRADIVCLQEVQNDHFEEFFLPELDKHGYQGLFKRKTNEVFIGNTNTIDGCATFFRRDRFSHVKKYEVEFNKAAQSLTEAIIPVSQKK 377          
BLAST of CX291359 vs. ExPASy Swiss-Prot
Match: CCR4_YEAST (Glucose-repressible alcohol dehydrogenase transcriptional effector OS=Saccharomyces cerevisiae GN=CCR4 PE=1 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 6.821e-26
Identity = 52/115 (45.22%), Postives = 77/115 (66.96%), Query Frame = 2
Query:  281 TFSVLSYNILSDVYATSESYSYCPSWALSWAYRRQNLLREIIGYRADIVCLQEVQNDHFEEFFAPELDKHGYQALY--KRKTNEVYNGNPHTIDGCATFFRRDRFSHVKKYEVEF 619
            TF+VLSYN L   YAT + Y Y PSWALSW YRR  L  +++ Y +D++CLQEV++  FEE++ P LDKHGY  ++  K +   +++ +   +DGC  FF+RD+F  + K  ++F
Sbjct:  504 TFTVLSYNTLCQHYATPKMYRYTPSWALSWDYRRNKLKEQLLSYDSDLLCLQEVESKTFEEYWVPLLDKHGYTGIFHAKARAKTMHSKDSKKVDGCCIFFKRDQFKLITKDAMDF 618          
BLAST of CX291359 vs. ExPASy Swiss-Prot
Match: CNOT6_XENLA (CCR4-NOT transcription complex subunit 6 OS=Xenopus laevis GN=cnot6 PE=2 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 4.421e-25
Identity = 59/164 (35.98%), Postives = 89/164 (54.27%), Query Frame = 2
Query:  152 NTLLTSRVIPAPSPSPRRLFPVNGSDMNMMGHIDSDGRISSTGTFSVLSYNILSDVYATSESYSYCPSWALSWAYRRQNLLREIIGYRADIVCLQEVQNDHFEEFFAPELDKHGYQALY--KRKTNEVYNGNPHTIDGCATFFRRDRFSHVKKYEVEFIKAAQS 637
            N LL +  +    P PR    +   D           R   T  FSV+ YN+L D YAT + Y YCPSWAL+W YR++ +++EI+   ADI+ LQEV+ + +  FF  EL + GY   +  K +   +       +DGCA FF+ ++F+ V+K+ VEF + A +
Sbjct:  151 NYLLDNLSVSTEQPPPRSWIMLQEPD-----------RTRPTALFSVMCYNVLCDKYATRQLYGYCPSWALNWDYRKKAIIQEILSCNADIISLQEVETEQYYSFFLVELKERGYNGFFSPKSRARTMSEQERKHVDGCAIFFKTEKFTLVQKHTVEFNQLAMA 303          
BLAST of CX291359 vs. ExPASy Swiss-Prot
Match: CNOT6_HUMAN (CCR4-NOT transcription complex subunit 6 OS=Homo sapiens GN=CNOT6 PE=1 SV=2)

HSP 1 Score: 114.39 bits (285), Expect = 5.774e-25
Identity = 59/160 (36.88%), Postives = 88/160 (55.00%), Query Frame = 2
Query:  164 TSRVIPAPSPSPRRLFPVNGSDMNMMGHIDSDGRISSTGTFSVLSYNILSDVYATSESYSYCPSWALSWAYRRQNLLREIIGYRADIVCLQEVQNDHFEEFFAPELDKHGYQALY--KRKTNEVYNGNPHTIDGCATFFRRDRFSHVKKYEVEFIKAAQS 637
            T++ I    P PR    +   D           R   T  FSV+ YN+L D YAT + Y YCPSWAL+W YR++ +++EI+   ADIV LQEV+ + +  FF  EL + GY   +  K +   +       +DGCA FF+ ++F+ V+K+ VEF + A +
Sbjct:  160 TAKRITTEQPPPRSWIMLQEPD-----------RTRPTALFSVMCYNVLCDKYATRQLYGYCPSWALNWDYRKKAIIQEILSCNADIVSLQEVETEQYYSFFLVELKERGYNGFFSPKSRARTMSEQERKHVDGCAIFFKTEKFTLVQKHTVEFNQLAMA 308          
BLAST of CX291359 vs. ExPASy Swiss-Prot
Match: CNOT6_RAT (CCR4-NOT transcription complex subunit 6 OS=Rattus norvegicus GN=Cnot6 PE=2 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 7.541e-25
Identity = 58/160 (36.25%), Postives = 88/160 (55.00%), Query Frame = 2
Query:  164 TSRVIPAPSPSPRRLFPVNGSDMNMMGHIDSDGRISSTGTFSVLSYNILSDVYATSESYSYCPSWALSWAYRRQNLLREIIGYRADIVCLQEVQNDHFEEFFAPELDKHGYQALY--KRKTNEVYNGNPHTIDGCATFFRRDRFSHVKKYEVEFIKAAQS 637
            T++ I    P PR    +   D           R   T  FSV+ YN+L D YAT + Y YCPSWAL+W YR++ +++EI+   ADI+ LQEV+ + +  FF  EL + GY   +  K +   +       +DGCA FF+ ++F+ V+K+ VEF + A +
Sbjct:  160 TAKRISTEQPPPRSWIMLQEPD-----------RTRPTALFSVMCYNVLCDKYATRQLYGYCPSWALNWDYRKKAIIQEILSCNADIISLQEVETEQYYSFFLVELKERGYNGFFSPKSRARTMSEQERKHVDGCAIFFKTEKFTLVQKHTVEFNQLAMA 308          
BLAST of CX291359 vs. ExPASy Swiss-Prot
Match: CNOT6_MOUSE (CCR4-NOT transcription complex subunit 6 OS=Mus musculus GN=Cnot6 PE=1 SV=2)

HSP 1 Score: 114.005 bits (284), Expect = 7.541e-25
Identity = 58/160 (36.25%), Postives = 88/160 (55.00%), Query Frame = 2
Query:  164 TSRVIPAPSPSPRRLFPVNGSDMNMMGHIDSDGRISSTGTFSVLSYNILSDVYATSESYSYCPSWALSWAYRRQNLLREIIGYRADIVCLQEVQNDHFEEFFAPELDKHGYQALY--KRKTNEVYNGNPHTIDGCATFFRRDRFSHVKKYEVEFIKAAQS 637
            T++ I    P PR    +   D           R   T  FSV+ YN+L D YAT + Y YCPSWAL+W YR++ +++EI+   ADI+ LQEV+ + +  FF  EL + GY   +  K +   +       +DGCA FF+ ++F+ V+K+ VEF + A +
Sbjct:  160 TAKRISTEQPPPRSWIMLQEPD-----------RTRPTALFSVMCYNVLCDKYATRQLYGYCPSWALNWDYRKKAIIQEILSCNADIISLQEVETEQYYSFFLVELKERGYNGFFSPKSRARTMSEQERKHVDGCAIFFKTEKFTLVQKHTVEFNQLAMA 308          
BLAST of CX291359 vs. ExPASy Swiss-Prot
Match: CCR4_USTMA (Glucose-repressible alcohol dehydrogenase transcriptional effector OS=Ustilago maydis GN=CCR4 PE=3 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 1.680e-24
Identity = 56/158 (35.44%), Postives = 93/158 (58.86%), Query Frame = 2
Query:  179 PAPSPSPRRLFPVNGSDMNMMGHIDSDGRISSTGTFSVLSYNILSDVYATSESYSYCPSWALSWAYRRQNLLREIIGYRADIVCLQEVQNDHFEEFFAPELDKHGYQALY--KRKTNEVYNGNPHTIDGCATFFRRDRFSHVKKYEVEFIKAAQSLTD 646
            P P P P R + +   D+  +   D     ++  +F+VLSYNIL D YAT++ Y Y PSWAL+W YR++ +L+E++ Y ADI CLQEV  + +E++F   L +  Y+ ++  K +   + +     +DGCA F++ +++  ++K  VEF + A    D
Sbjct:  270 PVPLPPPEREWIMIDPDLPDLD-ADKHANDATQESFNVLSYNILFDRYATAQMYGYTPSWALAWDYRKEFILQEVMSYSADICCLQEVGVEQYEDYFLHHLSQQDYEGVFYPKSRARTMRDDERRRVDGCAIFYKSNKYQLIEKQLVEFNQIALQRPD 426          
BLAST of CX291359 vs. ExPASy Swiss-Prot
Match: CNO6L_MOUSE (CCR4-NOT transcription complex subunit 6-like OS=Mus musculus GN=Cnot6l PE=1 SV=2)

HSP 1 Score: 112.079 bits (279), Expect = 2.866e-24
Identity = 50/130 (38.46%), Postives = 80/130 (61.54%), Query Frame = 2
Query:  263 RISSTGTFSVLSYNILSDVYATSESYSYCPSWALSWAYRRQNLLREIIGYRADIVCLQEVQNDHFEEFFAPELDKHGYQALYKRKTNEVYNGNPHT--IDGCATFFRRDRFSHVKKYEVEFIKAAQSLTD 646
            +I  + +F+V+ YN+L D YAT + Y YCPSWAL+W YR++ ++ EI+ + ADI+ LQEV+ + +   F P L   GY   +  K+            +DGCA FF+ ++F+ V+K+ VEF + A + +D
Sbjct:  182 QILPSASFTVMCYNVLCDKYATRQLYGYCPSWALNWEYRKKGIMEEIVNWDADIISLQEVETEQYFTLFLPALKDRGYDGFFSPKSRAKIMSEQERKHVDGCAIFFKTEKFTLVQKHTVEFNQVAMANSD 311          
BLAST of CX291359 vs. ExPASy Swiss-Prot
Match: CN6LA_XENLA (CCR4-NOT transcription complex subunit 6-like-A OS=Xenopus laevis GN=cnot6l-A PE=2 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 3.743e-24
Identity = 51/121 (42.15%), Postives = 78/121 (64.46%), Query Frame = 2
Query:  281 TFSVLSYNILSDVYATSESYSYCPSWALSWAYRRQNLLREIIGYRADIVCLQEVQNDHFEEFFAPELDKHGYQALY--KRKTNEVYNGNPHTIDGCATFFRRDRFSHVKKYEVEFIKAAQS 637
            +F+V+ YN+L D YAT + Y YCPSWAL+W YR++ ++ EII   ADI+ LQEV+ + +   F P L++ GY   +  K +   + +     +DGCA FFR ++FS V+K+ VEF + A +
Sbjct:  183 SFTVMCYNVLCDKYATRQLYGYCPSWALNWEYRKKGIMDEIISCDADIISLQEVETEQYFTLFMPALEERGYDGFFSPKSRAKIMSDQEKKHVDGCAIFFRTEKFSLVQKHTVEFNQIAMA 303          
The following BLAST results are available for this feature:
BLAST of CX291359 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 49
Match NameE-valueIdentityDescription
CCR4B_ARATH3.103e-9574.67Carbon catabolite repressor protein 4 homolog 2 OS... [more]
CCR4A_ARATH3.103e-9575.33Carbon catabolite repressor protein 4 homolog 1 OS... [more]
CCR4_YEAST6.821e-2645.22Glucose-repressible alcohol dehydrogenase transcri... [more]
CNOT6_XENLA4.421e-2535.98CCR4-NOT transcription complex subunit 6 OS=Xenopu... [more]
CNOT6_HUMAN5.774e-2536.88CCR4-NOT transcription complex subunit 6 OS=Homo s... [more]
CNOT6_RAT7.541e-2536.25CCR4-NOT transcription complex subunit 6 OS=Rattus... [more]
CNOT6_MOUSE7.541e-2536.25CCR4-NOT transcription complex subunit 6 OS=Mus mu... [more]
CCR4_USTMA1.680e-2435.44Glucose-repressible alcohol dehydrogenase transcri... [more]
CNO6L_MOUSE2.866e-2438.46CCR4-NOT transcription complex subunit 6-like OS=M... [more]
CN6LA_XENLA3.743e-2442.15CCR4-NOT transcription complex subunit 6-like-A OS... [more]

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Properties
Property NameValue
Genbank descriptionC03007B01SK OF2 Citrus clementina cDNA clone C03007B01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX291359 ID=CX291359; Name=CX291359; organism=Citrus clementina; type=EST; length=687bp
TCCTGCTGCAGTTACGCGGAGTGGAGGTGAAACTTGGTTTGAAGTTGGAC
GATCAAAAACATACACTCCATCAGCCGATGATATTGGCCATGTCCTGAAG
TTTGAGTGTGTCGTAGTAGATGCAGAAACCAAACTCCCCGTGGGGCATCC
CAACACTCTGTTGACTTCCCGAGTCATTCCTGCCCCTTCTCCTAGTCCTC
GTCGCTTGTTCCCGGTCAATGGATCTGACATGAACATGATGGGGCATATC
GATTCTGATGGCCGTATTTCAAGCACTGGAACTTTTTCTGTGCTCTCATA
CAATATTTTGTCTGATGTGTACGCAACAAGCGAATCATATAGTTACTGCC
CTTCATGGGCTCTATCGTGGGCATATCGCAGACAGAATTTGTTGCGGGAA
ATTATTGGCTACCGTGCTGATATAGTTTGTCTTCAGGAGGTTCAAAATGA
TCACTTTGAGGAATTTTTTGCCCCTGAGCTCGACAAACATGGCTATCAAG
CTCTCTATAAGAGAAAAACAAATGAGGTTTACAATGGAAACCCCCATACA
ATCGATGGCTGTGCAACATTTTTCCGTAGAGATAGATTTTCACATGTCAA
AAAATATGAGGTTGAATTTATTAAGGCTGCTCAGTCTTTGACTGATGCTA
TACTTCCAGTGCCCAGAAGAAGATGCTTTGAATCGAT
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