CX291374

Overview
NameCX291374
Unique NameCX291374
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length699
Libraries
Library NameType
OF2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX291374_ssr127 microsatellite CX291374_ssr127:127..138. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig591 contig Ccv1_Contig591:26..723. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX291374 vs. ExPASy Swiss-Prot
Match: DER22_ARATH (Derlin-2.2 OS=Arabidopsis thaliana GN=DER2.2 PE=2 SV=1)

HSP 1 Score: 300.442 bits (768), Expect = 5.928e-81
Identity = 145/177 (81.92%), Postives = 158/177 (89.27%), Query Frame = 1
Query:  169 MAQAVEDWYKQMPIITRTYLTAAIVTTVGCSLDIISPFNLCLHPTLVVKHYQFWRLITNFLFFRKXXXXXXXXXXXXARYCKLLEENSFRGRTADFLYMLLFGATFLTGTVLIGGMIPYLSESFAKIIFLSNSLTLMMVYVWSKQNPFIHMSFLGLFTFTAAYLPWVLLGFSVFVGA 699
            MAQAVE+WYKQMPIITR+YLTAA++TTVGCSLDIISP+NL L+PTLVVK YQ+WRL+TNFL+FRK            ARYCKLLEENSFRG+TADFLYMLLFGA+ LTG VLIGGMIPYLS SFAKIIFLSNSLT MMVYVWSKQNP+IHMSFLGLFTFTAAYLPWVLLGFS+ VGA
Sbjct:    1 MAQAVEEWYKQMPIITRSYLTAAVITTVGCSLDIISPYNLYLNPTLVVKQYQYWRLVTNFLYFRKMDLDFMFHMFFLARYCKLLEENSFRGKTADFLYMLLFGASVLTGIVLIGGMIPYLSASFAKIIFLSNSLTFMMVYVWSKQNPYIHMSFLGLFTFTAAYLPWVLLGFSILVGA 177          
BLAST of CX291374 vs. ExPASy Swiss-Prot
Match: DER21_ARATH (Derlin-2.1 OS=Arabidopsis thaliana GN=DER2.1 PE=2 SV=2)

HSP 1 Score: 298.901 bits (764), Expect = 1.725e-80
Identity = 145/177 (81.92%), Postives = 157/177 (88.70%), Query Frame = 1
Query:  169 MAQAVEDWYKQMPIITRTYLTAAIVTTVGCSLDIISPFNLCLHPTLVVKHYQFWRLITNFLFFRKXXXXXXXXXXXXARYCKLLEENSFRGRTADFLYMLLFGATFLTGTVLIGGMIPYLSESFAKIIFLSNSLTLMMVYVWSKQNPFIHMSFLGLFTFTAAYLPWVLLGFSVFVGA 699
            MAQAVE+WYKQMPIITR+YLTAA+VTTVGCSL+IISP+NL L+PTLVVK YQFWRL+TNFL+FRK            ARYCKLLEENSFRG+T DFLYMLLFGAT LTG VLIGGMIPYLS SF+KIIFLSNSLT MMVYVWSKQNP+IHMSFLGLFTFTAAYLPWVLLGFS+ VGA
Sbjct:    1 MAQAVEEWYKQMPIITRSYLTAAVVTTVGCSLEIISPYNLYLNPTLVVKQYQFWRLVTNFLYFRKMDLDFLFHMFFLARYCKLLEENSFRGKTTDFLYMLLFGATVLTGIVLIGGMIPYLSVSFSKIIFLSNSLTFMMVYVWSKQNPYIHMSFLGLFTFTAAYLPWVLLGFSILVGA 177          
BLAST of CX291374 vs. ExPASy Swiss-Prot
Match: DERL2_ORYSJ (Derlin-2 OS=Oryza sativa subsp. japonica GN=DER2 PE=2 SV=1)

HSP 1 Score: 289.656 bits (740), Expect = 1.046e-77
Identity = 137/177 (77.40%), Postives = 156/177 (88.14%), Query Frame = 1
Query:  169 MAQAVEDWYKQMPIITRTYLTAAIVTTVGCSLDIISPFNLCLHPTLVVKHYQFWRLITNFLFFRKXXXXXXXXXXXXARYCKLLEENSFRGRTADFLYMLLFGATFLTGTVLIGGMIPYLSESFAKIIFLSNSLTLMMVYVWSKQNPFIHMSFLGLFTFTAAYLPWVLLGFSVFVGA 699
            MAQAVE+WY+QMPIITR+YLTAA+VTTVGC+L+IISP++L L+P LVV+HY+ WRL+TNFL+FRK            ARYCKLLEENSFRGRTADF YMLLFGAT LTG VLIGGMIPY+SE+FA+I+FLSNSLT MMVYVWSK NPFIHMSFLGLFTFTAAYLPWVLLGFS+ VG+
Sbjct:    1 MAQAVEEWYRQMPIITRSYLTAAVVTTVGCTLEIISPYHLYLNPKLVVQHYEIWRLVTNFLYFRKMDLDFLFHMFFLARYCKLLEENSFRGRTADFFYMLLFGATVLTGIVLIGGMIPYISETFARILFLSNSLTFMMVYVWSKHNPFIHMSFLGLFTFTAAYLPWVLLGFSILVGS 177          
BLAST of CX291374 vs. ExPASy Swiss-Prot
Match: DER22_MAIZE (Derlin-2.2 OS=Zea mays GN=DER2.2 PE=2 SV=1)

HSP 1 Score: 289.656 bits (740), Expect = 1.046e-77
Identity = 137/177 (77.40%), Postives = 156/177 (88.14%), Query Frame = 1
Query:  169 MAQAVEDWYKQMPIITRTYLTAAIVTTVGCSLDIISPFNLCLHPTLVVKHYQFWRLITNFLFFRKXXXXXXXXXXXXARYCKLLEENSFRGRTADFLYMLLFGATFLTGTVLIGGMIPYLSESFAKIIFLSNSLTLMMVYVWSKQNPFIHMSFLGLFTFTAAYLPWVLLGFSVFVGA 699
            MAQAVE+WY+QMPIITR+YLTAA+VTTVGC+L+IISP++L L+P LVV+HY+ WRL+TNFL+FRK            ARYCKLLEENSFRGRTADF YMLLFGAT LTG VLIGGMIPY+SE+FA+I+FLSNSLT MMVYVWSK NPFIHMSFLGLFTFTAAYLPWVLLGFS+ VG+
Sbjct:    1 MAQAVEEWYRQMPIITRSYLTAAVVTTVGCTLEIISPYHLYLNPKLVVQHYEIWRLVTNFLYFRKMDLDFLFHMFFLARYCKLLEENSFRGRTADFFYMLLFGATVLTGIVLIGGMIPYISETFARILFLSNSLTFMMVYVWSKHNPFIHMSFLGLFTFTAAYLPWVLLGFSILVGS 177          
BLAST of CX291374 vs. ExPASy Swiss-Prot
Match: DER21_MAIZE (Derlin-2.1 OS=Zea mays GN=DER2.1 PE=2 SV=2)

HSP 1 Score: 287.345 bits (734), Expect = 5.193e-77
Identity = 136/177 (76.84%), Postives = 155/177 (87.57%), Query Frame = 1
Query:  169 MAQAVEDWYKQMPIITRTYLTAAIVTTVGCSLDIISPFNLCLHPTLVVKHYQFWRLITNFLFFRKXXXXXXXXXXXXARYCKLLEENSFRGRTADFLYMLLFGATFLTGTVLIGGMIPYLSESFAKIIFLSNSLTLMMVYVWSKQNPFIHMSFLGLFTFTAAYLPWVLLGFSVFVGA 699
            MAQAVE+WY+QMPIITR+YLTAA+VTTVGC+L+IISP++L L+P LVV+HY+ WRL+TNFL+FRK            ARYCKLLEENSFRGRTADF YMLLFGAT LT  VLIGGMIPY+SE+FA+I+FLSNSLT MMVYVWSK NPFIHMSFLGLFTFTAAYLPWVLLGFS+ VG+
Sbjct:    1 MAQAVEEWYRQMPIITRSYLTAAVVTTVGCTLEIISPYHLYLNPKLVVQHYEIWRLVTNFLYFRKMDLDFLFHMFFLARYCKLLEENSFRGRTADFFYMLLFGATVLTSIVLIGGMIPYISETFARILFLSNSLTFMMVYVWSKHNPFIHMSFLGLFTFTAAYLPWVLLGFSILVGS 177          
BLAST of CX291374 vs. ExPASy Swiss-Prot
Match: DERL2_PONAB (Derlin-2 OS=Pongo abelii GN=DERL2 PE=2 SV=1)

HSP 1 Score: 167.548 bits (423), Expect = 5.997e-41
Identity = 77/168 (45.83%), Postives = 107/168 (63.69%), Query Frame = 1
Query:  193 YKQMPIITRTYLTAAIVTTVGCSLDIISPFNLCLHPTLVVKHYQFWRLITNFLFFRKXXXXXXXXXXXXARYCKLLEENSFRGRTADFLYMLLFGATFLTGTVLIGGMIPYLSESFAKIIFLSNSLTLMMVYVWSKQNPFIHMSFLGLFTFTAAYLPWVLLGFSVFVG 696
            Y Q+P ++R Y TA ++TT    L++I+PF L  +P L+ KH+Q WRLITNFLFF               RYC++LEE SFRGRTADF++M LFG   +T           L   F  ++FL  + T+M+VYVWS++NP++ M+F GL  F A +LPWVL+GFS+ +G
Sbjct:   10 YLQIPPVSRAYTTACVLTTAAVQLELITPFQLYFNPELIFKHFQIWRLITNFLFFGPVGFNFLFNMIFLYRYCRMLEEGSFRGRTADFVFMFLFGGFLMT-----------LFGLFVSLVFLGQAFTIMLVYVWSRRNPYVRMNFFGLLNFQAPFLPWVLMGFSLLLG 166          
BLAST of CX291374 vs. ExPASy Swiss-Prot
Match: DERL2_MOUSE (Derlin-2 OS=Mus musculus GN=Derl2 PE=2 SV=2)

HSP 1 Score: 167.548 bits (423), Expect = 5.997e-41
Identity = 77/168 (45.83%), Postives = 107/168 (63.69%), Query Frame = 1
Query:  193 YKQMPIITRTYLTAAIVTTVGCSLDIISPFNLCLHPTLVVKHYQFWRLITNFLFFRKXXXXXXXXXXXXARYCKLLEENSFRGRTADFLYMLLFGATFLTGTVLIGGMIPYLSESFAKIIFLSNSLTLMMVYVWSKQNPFIHMSFLGLFTFTAAYLPWVLLGFSVFVG 696
            Y Q+P ++R Y TA ++TT    L++I+PF L  +P L+ KH+Q WRLITNFLFF               RYC++LEE SFRGRTADF++M LFG   +T           L   F  ++FL  + T+M+VYVWS++NP++ M+F GL  F A +LPWVL+GFS+ +G
Sbjct:   10 YLQIPPVSRAYTTACVLTTAAVQLELITPFQLYFNPELIFKHFQIWRLITNFLFFGPVGFNFLFNMIFLYRYCRMLEEGSFRGRTADFVFMFLFGGFLMT-----------LFGLFVSLVFLGQAFTIMLVYVWSRRNPYVRMNFFGLLNFQAPFLPWVLMGFSLLLG 166          
BLAST of CX291374 vs. ExPASy Swiss-Prot
Match: DERL2_HUMAN (Derlin-2 OS=Homo sapiens GN=DERL2 PE=1 SV=1)

HSP 1 Score: 167.548 bits (423), Expect = 5.997e-41
Identity = 77/168 (45.83%), Postives = 107/168 (63.69%), Query Frame = 1
Query:  193 YKQMPIITRTYLTAAIVTTVGCSLDIISPFNLCLHPTLVVKHYQFWRLITNFLFFRKXXXXXXXXXXXXARYCKLLEENSFRGRTADFLYMLLFGATFLTGTVLIGGMIPYLSESFAKIIFLSNSLTLMMVYVWSKQNPFIHMSFLGLFTFTAAYLPWVLLGFSVFVG 696
            Y Q+P ++R Y TA ++TT    L++I+PF L  +P L+ KH+Q WRLITNFLFF               RYC++LEE SFRGRTADF++M LFG   +T           L   F  ++FL  + T+M+VYVWS++NP++ M+F GL  F A +LPWVL+GFS+ +G
Sbjct:   10 YLQIPPVSRAYTTACVLTTAAVQLELITPFQLYFNPELIFKHFQIWRLITNFLFFGPVGFNFLFNMIFLYRYCRMLEEGSFRGRTADFVFMFLFGGFLMT-----------LFGLFVSLVFLGQAFTIMLVYVWSRRNPYVRMNFFGLLNFQAPFLPWVLMGFSLLLG 166          
BLAST of CX291374 vs. ExPASy Swiss-Prot
Match: DERL2_DICDI (Probable derlin-2 homolog OS=Dictyostelium discoideum GN=derl2 PE=3 SV=1)

HSP 1 Score: 163.31 bits (412), Expect = 1.131e-39
Identity = 77/169 (45.56%), Postives = 112/169 (66.27%), Query Frame = 1
Query:  169 MAQAVEDWYKQMPIITRTYLTAAIVTTVGCSLDIISPFNLCLHPTLVVKHYQFWRLITNFLFFRKXXXXXXXXXXXXARYCKLLEENSFRGRTADFLYMLLFGATFLTGTVLIGGMIPYLSESFAKIIFLSNSLTLMMVYVWSKQNPFIHMSFLGLFTFTAAYLPWVLL 675
            MAQ  EDWYK +PI+T+ Y+T  +VT+V   L ++ P  L L+  LV   Y+FWRL TNF F+ +             R+ +LLEE+SFRGR+AD+L+M +FG+  L    LI     + ++   K++FL+ S+  M++YVWS++NP +H+SFLGLFTF+A YLPWV+L
Sbjct:    1 MAQPFEDWYKNLPIVTKIYMTGCVVTSVSVYLGLVGPLRLYLNFPLVFGKYEFWRLFTNFFFYDEIGMNFFFHMYFLVRHSRLLEESSFRGRSADYLFMWIFGSFLL----LIMDAFLFYTKIVTKVLFLAPSIAFMVIYVWSRRNPNMHISFLGLFTFSAPYLPWVIL 165          
BLAST of CX291374 vs. ExPASy Swiss-Prot
Match: DERL2_CAEEL (Derlin-2 OS=Caenorhabditis elegans GN=der-2 PE=2 SV=2)

HSP 1 Score: 155.606 bits (392), Expect = 2.358e-37
Identity = 75/167 (44.91%), Postives = 104/167 (62.28%), Query Frame = 1
Query:  196 KQMPIITRTYLTAAIVTTVGCSLDIISPFNLCLHPTLVVKHYQFWRLITNFLFFRKXXXXXXXXXXXXARYCKLLEENSFRGRTADFLYMLLFGATFLTGTVLIGGMIPYLSESFAKIIFLSNSLTLMMVYVWSKQNPFIHMSFLGLFTFTAAYLPWVLLGFSVFVG 696
            ++MP +TR Y  A ++ T    L+ ++PF+L  +  L+++ YQFWRLIT+F FF               RYC +LEE SFRGR ADF+YM LFGA  +            LS  F +I+FL  + T+M+VY+WS++NP I M+F G+ TFTA YLPWVLL FS+ +G
Sbjct:    9 EEMPPVTRFYTGACVLLTTAVHLEFVTPFHLYFNWELIIRKYQFWRLITSFCFFGSFGFSFLFNMIFTYRYCMMLEEGSFRGRRADFVYMFLFGAVLMI-----------LSGIFVQILFLGQAFTIMLVYIWSRRNPMIQMNFFGVLTFTAPYLPWVLLLFSLLLG 164          
The following BLAST results are available for this feature:
BLAST of CX291374 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 25
Match NameE-valueIdentityDescription
DER22_ARATH5.928e-8181.92Derlin-2.2 OS=Arabidopsis thaliana GN=DER2.2 PE=2 ... [more]
DER21_ARATH1.725e-8081.92Derlin-2.1 OS=Arabidopsis thaliana GN=DER2.1 PE=2 ... [more]
DERL2_ORYSJ1.046e-7777.40Derlin-2 OS=Oryza sativa subsp. japonica GN=DER2 P... [more]
DER22_MAIZE1.046e-7777.40Derlin-2.2 OS=Zea mays GN=DER2.2 PE=2 SV=1[more]
DER21_MAIZE5.193e-7776.84Derlin-2.1 OS=Zea mays GN=DER2.1 PE=2 SV=2[more]
DERL2_PONAB5.997e-4145.83Derlin-2 OS=Pongo abelii GN=DERL2 PE=2 SV=1[more]
DERL2_MOUSE5.997e-4145.83Derlin-2 OS=Mus musculus GN=Derl2 PE=2 SV=2[more]
DERL2_HUMAN5.997e-4145.83Derlin-2 OS=Homo sapiens GN=DERL2 PE=1 SV=1[more]
DERL2_DICDI1.131e-3945.56Probable derlin-2 homolog OS=Dictyostelium discoid... [more]
DERL2_CAEEL2.358e-3744.91Derlin-2 OS=Caenorhabditis elegans GN=der-2 PE=2 S... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC03007C05SK OF2 Citrus clementina cDNA clone C03007C05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX291374 ID=CX291374; Name=CX291374; organism=Citrus clementina; type=EST; length=699bp
AGGGAAGCTCTCTCCCGATCTATCTCCACAATCAAAACCCCCCCTTTTTT
TTTTTTCACCACTTCACTCAGAAATCTTTAAATTTTCAAAAAGAAAAAAA
AAATCAGCACACTTTCAGGGCTCTAGAGATAGATAGATAAACCATATAGT
CAAAAAAATTAAAAGAAAATGGCTCAAGCTGTTGAAGATTGGTACAAACA
GATGCCTATCATCACCCGCACGTATCTCACAGCCGCTATCGTCACCACCG
TCGGCTGCTCTCTCGATATAATATCTCCTTTTAATCTGTGCTTGCACCCA
ACGTTAGTGGTTAAGCATTATCAGTTTTGGCGCCTTATCACCAATTTTCT
CTTCTTCCGGAAAATGGATTTAGATTTTTTGTTCCATATGTTTTTTCTCG
CACGATACTGCAAGCTTCTTGAAGAGAATTCCTTCAGGGGAAGGACTGCA
GATTTCTTGTACATGCTTTTATTTGGAGCCACTTTTCTAACCGGCACTGT
TCTTATTGGGGGGATGATACCTTACTTGTCAGAATCATTTGCAAAAATCA
TTTTCCTTAGCAATTCATTGACACTCATGATGGTTTATGTATGGAGCAAA
CAAAATCCTTTCATCCACATGAGTTTTTTGGGCCTTTTTACATTTACAGC
AGCTTACTTACCATGGGTGCTCTTGGGATTCTCAGTCTTCGTTGGCGCT
back to top