CX291377

Overview
NameCX291377
Unique NameCX291377
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length652
Libraries
Library NameType
OF2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig359 contig Ccv1_Contig359:1..650. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of CX291377 vs. ExPASy Swiss-Prot
Match: UMP2_ARATH (Uncharacterized protein At2g27730, mitochondrial OS=Arabidopsis thaliana GN=At2g27730 PE=1 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 6.194e-26
Identity = 66/115 (57.39%), Postives = 87/115 (75.65%), Query Frame = 3 
Query:   78 MASRIAVRNFSRRFSSSGKVLSEEEKAAENVYIKKVEQEKLEKMARKGPKPEETPTASSGSGAEAKPTSATGASTEKVSTDQYRNYAVIAGIITGVSALGWYLKSSGKKE-QVQD 419
            MA+R A+R  SRRFSS GKVLSEEE+AAENV+IKK+EQEKL+K+AR+GP  +   +AS    A A   SA+  S  KVS D+ RNYAV+AG++  V ++GWYLK+ GKK+ +VQ+
Sbjct:    1 MATRNALRIVSRRFSS-GKVLSEEERAAENVFIKKMEQEKLQKLARQGPGEQAAGSASEAKVAGA-TASASAESGPKVSEDKNRNYAVVAGVVAIVGSIGWYLKAGGKKQPEVQE 113
The following BLAST results are available for this feature:
BLAST of CX291377 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
UMP2_ARATH6.194e-2657.39Uncharacterized protein At2g27730, mitochondrial O... [more]
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Properties
Property NameValue
Genbank descriptionC03007C08SK OF2 Citrus clementina cDNA clone C03007C08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX291377 ID=CX291377; Name=CX291377; organism=Citrus clementina; type=EST; length=652bp
CTCCCCATTTCATTTCTCCAACACACAAAGCCGAAAAGCTTCCTCCGTGT
ATCCAAAAGGGTTTTATGACCACCATCATGGCTTCAAGGATTGCTGTAAG
AAATTTTTCTCGAAGGTTCTCAAGCAGTGGCAAAGTACTGAGCGAGGAGG
AAAAAGCAGCTGAGAATGTCTACATAAAAAAAGTTGAGCAAGAGAAATTG
GAGAAGATGGCACGCAAGGGACCCAAACCGGAAGAGACACCTACTGCTAG
CTCAGGGTCAGGAGCTGAAGCCAAACCTACCTCAGCCACGGGAGCTTCAA
CTGAGAAAGTATCAACTGACCAGTACCGTAACTATGCAGTCATAGCTGGT
ATCATAACTGGTGTTAGTGCTCTCGGATGGTATCTCAAATCAAGCGGGAA
GAAAGAACAAGTCCAGGACTGAAGTCAATATGCTAGATATAGATAATGAG
GGCCATGGACGACATTCTATCTACGACAACTGCTCACTACTGAGTTCATA
CATTGCTTTGAAATAAACAGAACTTGGATTATTATTGACCCCGTTTTGTT
TGTATTATTTCTCTTTTGTTTCACCAGACACTGGTTGAATTCCAAAGTCT
GTCTTTGGTGTTACCAGATAAACCTTTTGTTAGTAAAAATTCTCTTATTT
CA
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