CX291433

Overview
NameCX291433
Unique NameCX291433
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length695
Libraries
Library NameType
OF2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX291433_ssr403 microsatellite CX291433_ssr403:403..414. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of CX291433 vs. ExPASy Swiss-Prot
Match: COMT1_POPTM (Caffeic acid 3-O-methyltransferase 1 OS=Populus tremuloides GN=OMT1 PE=1 SV=1)

HSP 1 Score: 288.5 bits (737), Expect = 2.292e-77
Identity = 142/231 (61.47%), Postives = 172/231 (74.46%), Query Frame = 3
Query:    6 LLEIMAKVSPTQ-LSSSEIASQLPTNNKKAPIILDRMLRLLASYSFLACNLVSNKDGSVQRLYGLTPVSKYFVPNKDGVSLAPTLLIIQDKISMDSWSCAKDALLEGSVPFMKAHNEMDGFAAAAKDERINNLFNQSMHNHTTIVMKEILEIYKGFEGLNQLVDVAGGLGANLKSVVSKYPQLRGINFDLPHVLKHAPSCPGVEHVGGDMFVEVPKGQAIFMKWILHDWSD 695
            LLEIMAK  P   LS+SEIAS LPT N  AP++LDR+LRLLASYS L C+L    DG V+RLYGL PV K+   N+DGVS++P  L+ QDK+ M+SW   KDA+L+G +PF KA+  M  F     D R N +FN+ M +H+TI MK+ILE YKGFEGL  LVDV GG GA + ++VSKYP ++GINFDLPHV++ APS PGVEHVGGDMFV VPK  A+FMKWI HDWSD
Sbjct:   44 LLEIMAKAGPGAFLSTSEIASHLPTKNPDAPVMLDRILRLLASYSILTCSLKDLPDGKVERLYGLAPVCKFLTKNEDGVSVSPLCLMNQDKVLMESWYYLKDAILDGGIPFNKAYG-MTAFEYHGTDPRFNKVFNKGMSDHSTITMKKILETYKGFEGLTSLVDVGGGTGAVVNTIVSKYPSIKGINFDLPHVIEDAPSYPGVEHVGGDMFVSVPKADAVFMKWICHDWSD 273          
BLAST of CX291433 vs. ExPASy Swiss-Prot
Match: COMT1_POPKI (Caffeic acid 3-O-methyltransferase 1 OS=Populus kitakamiensis GN=HOMT1 PE=3 SV=1)

HSP 1 Score: 287.73 bits (735), Expect = 3.910e-77
Identity = 142/231 (61.47%), Postives = 171/231 (74.03%), Query Frame = 3
Query:    6 LLEIMAKVSPTQ-LSSSEIASQLPTNNKKAPIILDRMLRLLASYSFLACNLVSNKDGSVQRLYGLTPVSKYFVPNKDGVSLAPTLLIIQDKISMDSWSCAKDALLEGSVPFMKAHNEMDGFAAAAKDERINNLFNQSMHNHTTIVMKEILEIYKGFEGLNQLVDVAGGLGANLKSVVSKYPQLRGINFDLPHVLKHAPSCPGVEHVGGDMFVEVPKGQAIFMKWILHDWSD 695
            LLEIMAK  P   LS+SEIAS LPT N  AP++LDR+LRLLASYS L C+L    DG V+RLYGL PV K+   N+DGVS++P  L+ QDK+ M+SW   KDA+LEG +PF KA+  M  F     D R N +FN+ M +H+TI MK+ILE YKGFEGL  LVDV GG GA + ++VSKYP ++GINFDLPHV++ APS PGVEHVGGDMFV VP   A+FMKWI HDWSD
Sbjct:   44 LLEIMAKAGPGAFLSTSEIASHLPTKNPDAPVMLDRILRLLASYSILTCSLKDLPDGKVERLYGLAPVCKFLTKNEDGVSVSPLCLMNQDKVLMESWYYLKDAILEGGIPFNKAYG-MTAFEYHGTDPRFNKVFNKGMSDHSTITMKKILETYKGFEGLTSLVDVGGGTGAVVNTIVSKYPSIKGINFDLPHVIEDAPSYPGVEHVGGDMFVSVPNADAVFMKWICHDWSD 273          
BLAST of CX291433 vs. ExPASy Swiss-Prot
Match: COMT1_CATRO (Caffeic acid 3-O-methyltransferase OS=Catharanthus roseus GN=COMT1 PE=2 SV=1)

HSP 1 Score: 286.574 bits (732), Expect = 8.711e-77
Identity = 140/231 (60.61%), Postives = 172/231 (74.46%), Query Frame = 3
Query:    6 LLEIMAKVSP-TQLSSSEIASQLPTNNKKAPIILDRMLRLLASYSFLACNLVSNKDGSVQRLYGLTPVSKYFVPNKDGVSLAPTLLIIQDKISMDSWSCAKDALLEGSVPFMKAHNEMDGFAAAAKDERINNLFNQSMHNHTTIVMKEILEIYKGFEGLNQLVDVAGGLGANLKSVVSKYPQLRGINFDLPHVLKHAPSCPGVEHVGGDMFVEVPKGQAIFMKWILHDWSD 695
            LLE++ K  P   +S SE+A+QLPT N  AP++LDR+LRLLASYS L C L    DG ++RLY L PV K+   N+DGVS+A  LL+ QDK+ M+SW   KDA+LEG +PF KA+  M  F    KD R N +FNQ M NH+TI+MK+ILEIY+GF+GL  +VDV GG GA L  +VSKYP ++GINFDLPHV++ APS PGV+HVGGDMFV VPKG AIFMKWI HDWSD
Sbjct:   44 LLELIKKSGPGAYVSPSELAAQLPTQNPDAPVMLDRILRLLASYSVLNCTLKDLPDGGIERLYSLAPVCKFLTKNEDGVSMAALLLMNQDKVLMESWYHLKDAVLEGGIPFNKAYG-MTAFEYHGKDPRFNKVFNQGMSNHSTIIMKKILEIYQGFQGLKTVVDVGGGTGATLNMIVSKYPSIKGINFDLPHVIEDAPSYPGVDHVGGDMFVSVPKGDAIFMKWICHDWSD 273          
BLAST of CX291433 vs. ExPASy Swiss-Prot
Match: COMT1_COFCA (Caffeic acid 3-O-methyltransferase OS=Coffea canephora PE=2 SV=1)

HSP 1 Score: 286.189 bits (731), Expect = 1.138e-76
Identity = 140/231 (60.61%), Postives = 174/231 (75.32%), Query Frame = 3
Query:    6 LLEIMAKVSP-TQLSSSEIASQLPTNNKKAPIILDRMLRLLASYSFLACNLVSNKDGSVQRLYGLTPVSKYFVPNKDGVSLAPTLLIIQDKISMDSWSCAKDALLEGSVPFMKAHNEMDGFAAAAKDERINNLFNQSMHNHTTIVMKEILEIYKGFEGLNQLVDVAGGLGANLKSVVSKYPQLRGINFDLPHVLKHAPSCPGVEHVGGDMFVEVPKGQAIFMKWILHDWSD 695
            LLE++AK  P   +S SE+A+QLPT+N +API+LDR+LRLLA+YS L C L +  DG V+RLYGL PV K+   N DGVS+AP LL+ QDK+ M+SW   KDA+L+G +PF KA+  M  F     D R N +FNQ M NH+TI MK+ILE+Y+GFEGL  +VDV GG GA L  ++SKYP ++GINF+LPHV++ APS  GVEHVGGDMFV VPKG AIFMKWI HDWSD
Sbjct:   31 LLELIAKAGPGAYVSPSELAAQLPTHNPEAPIMLDRILRLLATYSVLDCKLNNLADGGVERLYGLAPVCKFLTKNADGVSMAPLLLMNQDKVLMESWYHLKDAVLDGGIPFNKAYG-MTAFEYHGTDPRFNKVFNQGMSNHSTITMKKILEVYRGFEGLKTVVDVGGGTGATLNMIISKYPTIKGINFELPHVVEDAPSHSGVEHVGGDMFVSVPKGDAIFMKWICHDWSD 260          
BLAST of CX291433 vs. ExPASy Swiss-Prot
Match: COMT1_EUCGL (Caffeic acid 3-O-methyltransferase (Fragment) OS=Eucalyptus globulus GN=COMT1 PE=3 SV=1)

HSP 1 Score: 284.263 bits (726), Expect = 4.323e-76
Identity = 137/231 (59.31%), Postives = 170/231 (73.59%), Query Frame = 3
Query:    6 LLEIMAKVSP-TQLSSSEIASQLPTNNKKAPIILDRMLRLLASYSFLACNLVSNKDGSVQRLYGLTPVSKYFVPNKDGVSLAPTLLIIQDKISMDSWSCAKDALLEGSVPFMKAHNEMDGFAAAAKDERINNLFNQSMHNHTTIVMKEILEIYKGFEGLNQLVDVAGGLGANLKSVVSKYPQLRGINFDLPHVLKHAPSCPGVEHVGGDMFVEVPKGQAIFMKWILHDWSD 695
            LLEIMA+  P   L+  E+ASQLPT N  AP++LDR+ RLLASYS L C L    +G V+RLYGL P+ K+ V N+DGVSLAP  LI QD++ ++SW   KDA+LEG +PF KAH  M  F     D R N +FN++M +H+TI+MK+ILE Y GFEGL  +VDV GG GA L  +V+KYP ++GINFDLPHV++ APS PGVEHVGGDMFV +P G A+FMKWI HDWSD
Sbjct:   26 LLEIMARAGPGAYLTPGEVASQLPTQNPDAPVMLDRIFRLLASYSVLTCTLCDLPEGKVERLYGLAPLCKFLVKNEDGVSLAPLRLIDQDRVFLESWYYMKDAILEGGIPFHKAHG-MTAFDYPGTDPRFNKIFNRAMSDHSTIMMKKILETYNGFEGLKTVVDVGGGTGAILNMIVAKYPSIKGINFDLPHVIEDAPSYPGVEHVGGDMFVNIPNGDAVFMKWICHDWSD 255          
BLAST of CX291433 vs. ExPASy Swiss-Prot
Match: COMT1_PRUDU (Caffeic acid 3-O-methyltransferase OS=Prunus dulcis GN=COMT1 PE=2 SV=1)

HSP 1 Score: 283.108 bits (723), Expect = 9.631e-76
Identity = 142/231 (61.47%), Postives = 171/231 (74.03%), Query Frame = 3
Query:    6 LLEIMAKVSP-TQLSSSEIASQLPTNNKKAPIILDRMLRLLASYSFLACNLVSNKDGSVQRLYGLTPVSKYFVPNKDGVSLAPTLLIIQDKISMDSWSCAKDALLEGSVPFMKAHNEMDGFAAAAKDERINNLFNQSMHNHTTIVMKEILEIYKGFEGLNQLVDVAGGLGANLKSVVSKYPQLRGINFDLPHVLKHAPSCPGVEHVGGDMFVEVPKGQAIFMKWILHDWSD 695
            LLEIMAK  P   LS ++IASQLPT N  AP++LDRMLRLLASYS L  +L +  DG V+RLYGL PV K+   N++GVS+AP  L+ QDK+ ++SW   KDA+LEG +PF KA+  M  F     D R N +FN+ M +H+TI MK+ILE YKGFEGL  +VDV GG GA L  +VSKYP ++GINFDLPHV++ AP  PGVEHVGGDMFV VPKG AIFMKWI HDWSD
Sbjct:   44 LLEIMAKAGPGVFLSPTDIASQLPTKNPDAPVMLDRMLRLLASYSILTYSLRTLADGKVERLYGLGPVCKFLTKNEEGVSIAPLCLMNQDKVLLESWYHLKDAVLEGGIPFNKAYG-MTAFEYHGTDPRFNKVFNRGMADHSTITMKKILETYKGFEGLTSVVDVGGGTGAVLNMIVSKYPSIKGINFDLPHVIEDAPQYPGVEHVGGDMFVSVPKGDAIFMKWICHDWSD 273          
BLAST of CX291433 vs. ExPASy Swiss-Prot
Match: COMT1_EUCGU (Caffeic acid 3-O-methyltransferase OS=Eucalyptus gunnii GN=OMT PE=2 SV=1)

HSP 1 Score: 283.108 bits (723), Expect = 9.631e-76
Identity = 141/231 (61.04%), Postives = 170/231 (73.59%), Query Frame = 3
Query:    6 LLEIMAKVSPTQ-LSSSEIASQLPTNNKKAPIILDRMLRLLASYSFLACNLVSNKDGSVQRLYGLTPVSKYFVPNKDGVSLAPTLLIIQDKISMDSWSCAKDALLEGSVPFMKAHNEMDGFAAAAKDERINNLFNQSMHNHTTIVMKEILEIYKGFEGLNQLVDVAGGLGANLKSVVSKYPQLRGINFDLPHVLKHAPSCPGVEHVGGDMFVEVPKGQAIFMKWILHDWSD 695
            LLEIMAK  P   LS  E+A+QLPT N +AP++LDR+ RLLASYS L C L +  DG V+RLYGL PV K+ V N+DGVS+A   L+ QDKI M+SW   KDA+LEG +PF KA+  M  F     D R N +FN+ M +H+TI MK+ILE YKGFEGL  +VDV GG GA L  +V+KYP ++GINFDLPHV++ AP  PGV+HVGGDMFV VPKG AIFMKWI HDWSD
Sbjct:   45 LLEIMAKAGPGAFLSPGEVAAQLPTQNPEAPVMLDRIFRLLASYSVLTCTLRNLPDGKVERLYGLAPVCKFLVKNEDGVSIAALNLMNQDKILMESWYYLKDAVLEGGIPFNKAYG-MTAFEYHGTDPRFNKIFNRGMSDHSTITMKKILETYKGFEGLETVVDVGGGTGAVLSMIVAKYPSMKGINFDLPHVIEDAPPLPGVKHVGGDMFVSVPKGDAIFMKWICHDWSD 274          
BLAST of CX291433 vs. ExPASy Swiss-Prot
Match: OMT1_ARATH (Quercetin 3-O-methyltransferase 1 OS=Arabidopsis thaliana GN=OMT1 PE=1 SV=1)

HSP 1 Score: 282.337 bits (721), Expect = 1.643e-75
Identity = 140/230 (60.87%), Postives = 170/230 (73.91%), Query Frame = 3
Query:    6 LLEIMAKVSPTQLSSSEIASQLPTNNKKAPIILDRMLRLLASYSFLACNLVSNKDGSVQRLYGLTPVSKYFVPNKDGVSLAPTLLIIQDKISMDSWSCAKDALLEGSVPFMKAHNEMDGFAAAAKDERINNLFNQSMHNHTTIVMKEILEIYKGFEGLNQLVDVAGGLGANLKSVVSKYPQLRGINFDLPHVLKHAPSCPGVEHVGGDMFVEVPKGQAIFMKWILHDWSD 695
            LLEIMAK + + +S +EIAS+LPT N +AP++LDR+LRLL SYS L C+        V+R+YGL PV KY   N+DGVS+A   L+ QDK+ M+SW   KDA+L+G +PF KA+  M  F     D R N +FN  M NH+TI MK+ILE YKGFEGL  LVDV GG+GA LK +VSKYP L+GINFDLPHV++ APS PG+EHVGGDMFV VPKG AIFMKWI HDWSD
Sbjct:   44 LLEIMAK-NGSPMSPTEIASKLPTKNPEAPVMLDRILRLLTSYSVLTCSNRKLSGDGVERIYGLGPVCKYLTKNEDGVSIAALCLMNQDKVLMESWYHLKDAILDGGIPFNKAYG-MSAFEYHGTDPRFNKVFNNGMSNHSTITMKKILETYKGFEGLTSLVDVGGGIGATLKMIVSKYPNLKGINFDLPHVIEDAPSHPGIEHVGGDMFVSVPKGDAIFMKWICHDWSD 271          
BLAST of CX291433 vs. ExPASy Swiss-Prot
Match: COMT1_MEDSA (Caffeic acid 3-O-methyltransferase OS=Medicago sativa PE=1 SV=1)

HSP 1 Score: 281.182 bits (718), Expect = 3.660e-75
Identity = 138/231 (59.74%), Postives = 171/231 (74.03%), Query Frame = 3
Query:    6 LLEIMAKVSP-TQLSSSEIASQLPTNNKKAPIILDRMLRLLASYSFLACNLVSNKDGSVQRLYGLTPVSKYFVPNKDGVSLAPTLLIIQDKISMDSWSCAKDALLEGSVPFMKAHNEMDGFAAAAKDERINNLFNQSMHNHTTIVMKEILEIYKGFEGLNQLVDVAGGLGANLKSVVSKYPQLRGINFDLPHVLKHAPSCPGVEHVGGDMFVEVPKGQAIFMKWILHDWSD 695
            LLEI+AK  P  Q+S  EIASQLPT N  AP++LDRMLRLLA Y  L C++ + +DG VQRLYGL  V+KY V N+DGVS++   L+ QDK+ M+SW   KDA+L+G +PF KA+  M  F     D R N +FN+ M +H+TI MK+ILE Y GFEGL  LVDV GG GA + ++VSKYP ++GINFDLPHV++ APS PGVEHVGGDMFV +PK  A+FMKWI HDWSD
Sbjct:   44 LLEIIAKAGPGAQISPIEIASQLPTTNPDAPVMLDRMLRLLACYIILTCSVRTQQDGKVQRLYGLATVAKYLVKNEDGVSISALNLMNQDKVLMESWYHLKDAVLDGGIPFNKAYG-MTAFEYHGTDPRFNKVFNKGMSDHSTITMKKILETYTGFEGLKSLVDVGGGTGAVINTIVSKYPTIKGINFDLPHVIEDAPSYPGVEHVGGDMFVSIPKADAVFMKWICHDWSD 273          
BLAST of CX291433 vs. ExPASy Swiss-Prot
Match: COMT1_CLABR (Caffeic acid 3-O-methyltransferase OS=Clarkia breweri GN=COMT PE=1 SV=1)

HSP 1 Score: 279.256 bits (713), Expect = 1.391e-74
Identity = 138/234 (58.97%), Postives = 170/234 (72.65%), Query Frame = 3
Query:    6 LLEIMAKVSP----TQLSSSEIASQLPTNNKKAPIILDRMLRLLASYSFLACNLVSNKDGSVQRLYGLTPVSKYFVPNKDGVSLAPTLLIIQDKISMDSWSCAKDALLEGSVPFMKAHNEMDGFAAAAKDERINNLFNQSMHNHTTIVMKEILEIYKGFEGLNQLVDVAGGLGANLKSVVSKYPQLRGINFDLPHVLKHAPSCPGVEHVGGDMFVEVPKGQAIFMKWILHDWSD 695
            +LEIMAK  P      +S +EIA+QLPT N  AP++LDR+LRLLASYS + C+L    DG V+RLYGL PV K+   N+DGVSLAP  L+ QDK+ M+SW   KDA+L+G +PF KA+  M  F     D R N +FN+ M +H+TI MK+I E+Y GFE LN +VDV GG GA L  +V+KYP ++GINFDLPHV++ AP  PGVEHVGGDMFV VPKG AIFMKWI HDWSD
Sbjct:   46 VLEIMAKSIPHGSGAYISPAEIAAQLPTTNPDAPVMLDRVLRLLASYSVVTCSLRELPDGKVERLYGLAPVCKFLTKNEDGVSLAPLCLMNQDKVLMESWYYLKDAILDGGIPFNKAYG-MTAFEYHGTDPRFNKVFNRGMSDHSTITMKKIFEMYTGFEALNTIVDVGGGTGAVLSMIVAKYPSIKGINFDLPHVIEDAPIYPGVEHVGGDMFVSVPKGDAIFMKWICHDWSD 278          
The following BLAST results are available for this feature:
BLAST of CX291433 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 37
Match NameE-valueIdentityDescription
COMT1_POPTM2.292e-7761.47Caffeic acid 3-O-methyltransferase 1 OS=Populus tr... [more]
COMT1_POPKI3.910e-7761.47Caffeic acid 3-O-methyltransferase 1 OS=Populus ki... [more]
COMT1_CATRO8.711e-7760.61Caffeic acid 3-O-methyltransferase OS=Catharanthus... [more]
COMT1_COFCA1.138e-7660.61Caffeic acid 3-O-methyltransferase OS=Coffea canep... [more]
COMT1_EUCGL4.323e-7659.31Caffeic acid 3-O-methyltransferase (Fragment) OS=E... [more]
COMT1_PRUDU9.631e-7661.47Caffeic acid 3-O-methyltransferase OS=Prunus dulci... [more]
COMT1_EUCGU9.631e-7661.04Caffeic acid 3-O-methyltransferase OS=Eucalyptus g... [more]
OMT1_ARATH1.643e-7560.87Quercetin 3-O-methyltransferase 1 OS=Arabidopsis t... [more]
COMT1_MEDSA3.660e-7559.74Caffeic acid 3-O-methyltransferase OS=Medicago sat... [more]
COMT1_CLABR1.391e-7458.97Caffeic acid 3-O-methyltransferase OS=Clarkia brew... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC03007H04SK OF2 Citrus clementina cDNA clone C03007H04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX291433 ID=CX291433; Name=CX291433; organism=Citrus clementina; type=EST; length=695bp
AGGGTTTGTTGGAGATAATGGCGAAAGTTAGCCCAACTCAACTCTCGTCT
TCAGAGATTGCCTCTCAGCTGCCCACAAATAACAAAAAAGCCCCAATAAT
ACTGGACAGAATGCTACGCCTCCTAGCCAGTTACTCTTTTCTCGCATGTA
ATCTTGTCTCGAACAAAGACGGAAGTGTTCAGAGATTATACGGCTTGACA
CCAGTTTCCAAATATTTTGTTCCAAATAAAGATGGAGTTTCTCTTGCTCC
CACTCTGCTCATAATTCAGGACAAAATTAGTATGGATTCTTGGTCCTGCG
CGAAGGATGCTTTATTGGAAGGGTCAGTACCATTTATGAAGGCACATAAT
GAAATGGATGGATTTGCGGCTGCCGCCAAAGATGAAAGAATAAATAACCT
CTTCAATCAATCAATGCACAATCACACAACTATAGTCATGAAGGAAATTC
TTGAGATCTACAAGGGATTTGAAGGGCTGAACCAATTGGTGGATGTTGCC
GGTGGCTTAGGTGCAAATCTTAAATCAGTTGTTTCTAAATATCCACAATT
AAGGGGGATTAACTTTGATTTACCTCATGTCCTCAAACATGCACCCTCTT
GTCCAGGTGTGGAGCATGTTGGAGGTGATATGTTTGTTGAAGTTCCTAAA
GGACAAGCTATTTTCATGAAGTGGATACTACATGACTGGAGCGAT
back to top