CX291444

Overview
NameCX291444
Unique NameCX291444
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length480
Libraries
Library NameType
OF2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14777 contig Ccv1_Contig14777:134..613. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX291444 vs. ExPASy Swiss-Prot
Match: UPTG1_SOLTU (Alpha-1,4-glucan-protein synthase [UDP-forming] 1 OS=Solanum tuberosum GN=UPTG1 PE=1 SV=2)

HSP 1 Score: 314.309 bits (804), Expect = 1.762e-85
Identity = 147/159 (92.45%), Postives = 151/159 (94.97%), Query Frame = 3
Query:    3 AVPLLKDESDIVIPTIRNLDFLEQWRPFFQAYHLIIVQDGDPSKTIKVPEGFDYELYNRNDINRILGPKASCISFKDSACRCFGYMVSKKKYVYTIDDDCFVAKDPSGKEINALEQHIRNLLSPSTPFFFNTLYDPYRDGADFVRGYPFSLREGVPTAV 479
            A PLLKDE DIVIPTIRNLDFLE WRPFFQ YHLIIVQDGDPSK IKVPEGFDYELYNRNDINRILGPKASCISFKDSACRCFGYMVSKKKY+YTIDDDCFVAKDPSGK+INALEQHI+NLL PSTP FFNTLYDPYRDGADFVRGYPFS+REG PTAV
Sbjct:    4 ATPLLKDELDIVIPTIRNLDFLEMWRPFFQPYHLIIVQDGDPSKIIKVPEGFDYELYNRNDINRILGPKASCISFKDSACRCFGYMVSKKKYIYTIDDDCFVAKDPSGKDINALEQHIKNLLCPSTPHFFNTLYDPYRDGADFVRGYPFSMREGAPTAV 162          
BLAST of CX291444 vs. ExPASy Swiss-Prot
Match: UPTG_PEA (Alpha-1,4-glucan-protein synthase [UDP-forming] OS=Pisum sativum GN=UPTG PE=1 SV=1)

HSP 1 Score: 313.538 bits (802), Expect = 3.006e-85
Identity = 146/157 (92.99%), Postives = 151/157 (96.18%), Query Frame = 3
Query:    9 PLLKDESDIVIPTIRNLDFLEQWRPFFQAYHLIIVQDGDPSKTIKVPEGFDYELYNRNDINRILGPKASCISFKDSACRCFGYMVSKKKYVYTIDDDCFVAKDPSGKEINALEQHIRNLLSPSTPFFFNTLYDPYRDGADFVRGYPFSLREGVPTAV 479
            PLLKDE DIVIPTIRNLDFLE WRPFF+ YHLIIVQDGDPSK IKVPEGFDYELYNRNDINRILGPKASCISFKDSACRCFGYMVSKKKY+YTIDDDCFVAKDP+G EINALEQHI+NLLSPSTPFFFNTLYDPYR+G DFVRGYPFSLREGVPTAV
Sbjct:    9 PLLKDELDIVIPTIRNLDFLEMWRPFFEQYHLIIVQDGDPSKVIKVPEGFDYELYNRNDINRILGPKASCISFKDSACRCFGYMVSKKKYIYTIDDDCFVAKDPTGHEINALEQHIKNLLSPSTPFFFNTLYDPYREGTDFVRGYPFSLREGVPTAV 165          
BLAST of CX291444 vs. ExPASy Swiss-Prot
Match: UPTG_MAIZE (Alpha-1,4-glucan-protein synthase [UDP-forming] OS=Zea mays GN=UPTG PE=1 SV=2)

HSP 1 Score: 311.612 bits (797), Expect = 1.142e-84
Identity = 146/159 (91.82%), Postives = 152/159 (95.60%), Query Frame = 3
Query:    3 AVPLLKDESDIVIPTIRNLDFLEQWRPFFQAYHLIIVQDGDPSKTIKVPEGFDYELYNRNDINRILGPKASCISFKDSACRCFGYMVSKKKYVYTIDDDCFVAKDPSGKEINALEQHIRNLLSPSTPFFFNTLYDPYRDGADFVRGYPFSLREGVPTAV 479
            + PLLKDE DIVIPTIRNLDFLE WR FFQ YHLIIVQDGDP+KTIKVPEGFDYELYNRNDINRILGPKASCISFKDSACRCFGYMVSKKKY+YTIDDDCFVAKDPSGK+INALEQHI+NLLSPSTPFFFNTLYDPYR+GADFVRGYPFSLREG  TAV
Sbjct:   14 STPLLKDELDIVIPTIRNLDFLEMWRAFFQPYHLIIVQDGDPTKTIKVPEGFDYELYNRNDINRILGPKASCISFKDSACRCFGYMVSKKKYIYTIDDDCFVAKDPSGKDINALEQHIKNLLSPSTPFFFNTLYDPYREGADFVRGYPFSLREGAHTAV 172          
BLAST of CX291444 vs. ExPASy Swiss-Prot
Match: UPTG2_SOLTU (Alpha-1,4-glucan-protein synthase [UDP-forming] 2 OS=Solanum tuberosum GN=UPTG2 PE=1 SV=1)

HSP 1 Score: 306.22 bits (783), Expect = 4.799e-83
Identity = 143/157 (91.08%), Postives = 148/157 (94.27%), Query Frame = 3
Query:    9 PLLKDESDIVIPTIRNLDFLEQWRPFFQAYHLIIVQDGDPSKTIKVPEGFDYELYNRNDINRILGPKASCISFKDSACRCFGYMVSKKKYVYTIDDDCFVAKDPSGKEINALEQHIRNLLSPSTPFFFNTLYDPYRDGADFVRGYPFSLREGVPTAV 479
            PLLKDE DIVIPTIRNLDFLE WRPFFQ YHLIIVQDGDPSK I VPEGFDYELYNRNDINRILGPKASCISFKDSACRCFGYMVSKKKY+YTIDDDCFVAKDPSGK+INALEQHI+NLL PSTP FFNTLYDPYR+GADFVRGYPFS+REG  TAV
Sbjct:   10 PLLKDELDIVIPTIRNLDFLEMWRPFFQPYHLIIVQDGDPSKIINVPEGFDYELYNRNDINRILGPKASCISFKDSACRCFGYMVSKKKYIYTIDDDCFVAKDPSGKDINALEQHIKNLLCPSTPHFFNTLYDPYREGADFVRGYPFSMREGAATAV 166          
The following BLAST results are available for this feature:
BLAST of CX291444 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
UPTG1_SOLTU1.762e-8592.45Alpha-1,4-glucan-protein synthase [UDP-forming] 1 ... [more]
UPTG_PEA3.006e-8592.99Alpha-1,4-glucan-protein synthase [UDP-forming] OS... [more]
UPTG_MAIZE1.142e-8491.82Alpha-1,4-glucan-protein synthase [UDP-forming] OS... [more]
UPTG2_SOLTU4.799e-8391.08Alpha-1,4-glucan-protein synthase [UDP-forming] 2 ... [more]
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Properties
Property NameValue
Genbank descriptionC03008B10SK OF2 Citrus clementina cDNA clone C03008B10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX291444 ID=CX291444; Name=CX291444; organism=Citrus clementina; type=EST; length=480bp
CGGCTGTGCCGCTGCTGAAAGACGAGTCGGACATCGTGATCCCCACGATC
CGAAACTTGGACTTCTTGGAGCAGTGGAGGCCGTTTTTTCAGGCCTATCA
TTTGATCATCGTTCAGGATGGTGACCCTTCGAAGACCATCAAAGTCCCTG
AGGGATTTGACTACGAGCTCTATAATCGTAACGATATTAACCGGATTCTG
GGTCCCAAGGCTTCTTGCATATCCTTCAAGGACTCTGCCTGCAGGTGCTT
TGGCTACATGGTGTCCAAGAAGAAGTATGTTTACACCATTGATGACGATT
GCTTTGTTGCTAAAGACCCATCTGGCAAAGAAATTAATGCACTGGAGCAG
CACATAAGGAACCTGCTGAGTCCATCCACCCCATTTTTCTTTAACACTCT
GTACGACCCATACCGTGATGGAGCTGACTTCGTTCGCGGATATCCGTTCA
GTCTTCGTGAGGGTGTCCCCACTGCTGTTT
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