CX291457

Overview
NameCX291457
Unique NameCX291457
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length385
Libraries
Library NameType
OF2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig11849 contig Ccv1_Contig11849:640..1024. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX291457 vs. ExPASy Swiss-Prot
Match: UBE4_ARATH (Probable ubiquitin conjugation factor E4 OS=Arabidopsis thaliana GN=PUB1 PE=1 SV=1)

HSP 1 Score: 235.728 bits (600), Expect = 5.506e-62
Identity = 112/127 (88.19%), Postives = 123/127 (96.85%), Query Frame = 3
Query:    3 FYDKFNIRHNIADLLEYLWQVPSHRNAWRQIAKEEEKGVYLNFLNFLINDSIYLLDESLNKILELKVIEAEMSNTAEWERRPAQERQERTRLFHSQENIITIDMKLANKDVSMLAFTSEQIAAPFLL 383
            FYDKFNIRHNIA+LLEYLWQVPSHRNAWR+IAK+EEKGVYLNFLNFL+NDSIYLLDESLNKILE+K IEA+MSNTAEWE+RP QERQERTRLFHSQENI+ IDMKLAN+DV+MLAFTSE+I APFLL
Sbjct:  694 FYDKFNIRHNIAELLEYLWQVPSHRNAWRRIAKDEEKGVYLNFLNFLVNDSIYLLDESLNKILEIKQIEADMSNTAEWEQRPTQERQERTRLFHSQENIVRIDMKLANEDVTMLAFTSEEITAPFLL 820          
BLAST of CX291457 vs. ExPASy Swiss-Prot
Match: UBE4B_MOUSE (Ubiquitin conjugation factor E4 B OS=Mus musculus GN=Ube4b PE=1 SV=2)

HSP 1 Score: 82.4185 bits (202), Expect = 7.791e-16
Identity = 39/126 (30.95%), Postives = 70/126 (55.56%), Query Frame = 3
Query:    3 FYDKFNIRHNIADLLEYLWQVPSHRNAWRQIAKEEEKGVYLNFLNFLINDSIYLLDESLNKILELKVIEAEMSNTAEWERRPAQERQERTRLFHSQENIITIDMKLANKDVSMLAFTSEQIAAPFL 380
            FYDKF IR++I+ + + LWQ  +H   + +     ++  ++ ++N LIND+ +LLDESL  +  +  ++ EM N  +W++ P  ++Q R       E +    + LA + V M    ++Q+  PFL
Sbjct:  857 FYDKFTIRYHISTIFKSLWQNIAHHGTFMEEFNSGKQ--FVRYINMLINDTTFLLDESLESLKRIHEVQEEMKNKEQWDQLPRDQQQARQSQLAQDERVSRSYLALATETVDMFHLLTKQVQKPFL 980          
BLAST of CX291457 vs. ExPASy Swiss-Prot
Match: UBE4B_HUMAN (Ubiquitin conjugation factor E4 B OS=Homo sapiens GN=UBE4B PE=1 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 7.791e-16
Identity = 39/126 (30.95%), Postives = 70/126 (55.56%), Query Frame = 3
Query:    3 FYDKFNIRHNIADLLEYLWQVPSHRNAWRQIAKEEEKGVYLNFLNFLINDSIYLLDESLNKILELKVIEAEMSNTAEWERRPAQERQERTRLFHSQENIITIDMKLANKDVSMLAFTSEQIAAPFL 380
            FYDKF IR++I+ + + LWQ  +H   + +     ++  ++ ++N LIND+ +LLDESL  +  +  ++ EM N  +W++ P  ++Q R       E +    + LA + V M    ++Q+  PFL
Sbjct:  986 FYDKFTIRYHISTIFKSLWQNIAHHGTFMEEFNSGKQ--FVRYINMLINDTTFLLDESLESLKRIHEVQEEMKNKEQWDQLPRDQQQARQSQLAQDERVSRSYLALATETVDMFHILTKQVQKPFL 1109          
BLAST of CX291457 vs. ExPASy Swiss-Prot
Match: UBE4A_RAT (Ubiquitin conjugation factor E4 A OS=Rattus norvegicus GN=Ube4a PE=2 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 7.546e-11
Identity = 36/133 (27.07%), Postives = 69/133 (51.88%), Query Frame = 3
Query:    3 FYDKFNIRHNIADLLEYLWQVPSHRNAWRQIAKEEEKGV-------YLNFLNFLINDSIYLLDESLNKILELKVIEAEMSNTAEWERRPAQERQERTRLFHSQENIITIDMKLANKDVSMLAFTSEQIAAPFL 380
            F  KFN R  +  +L Y+W   S+R + + +A    K +       +L FLN L+ND+I+LLDE++  + ++K+ + E  +  EWE    + R+E+         +      ++N+ +  L+F + +I + F+
Sbjct:  738 FEQKFNYRRPMYPILRYMWGTDSYRESIKDLADYASKNLEAMNPPLFLRFLNLLMNDAIFLLDEAIQYLSKIKIQQIE-KDRGEWESLTPEARREKEAGLQMFGQLARFHNIMSNETIGTLSFLTSEIKSLFV 869          
BLAST of CX291457 vs. ExPASy Swiss-Prot
Match: UBE4A_BOVIN (Ubiquitin conjugation factor E4 A OS=Bos taurus GN=UBE4A PE=2 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 9.855e-11
Identity = 35/133 (26.32%), Postives = 70/133 (52.63%), Query Frame = 3
Query:    3 FYDKFNIRHNIADLLEYLWQVPSHRNAWRQIAKEEEKGV-------YLNFLNFLINDSIYLLDESLNKILELKVIEAEMSNTAEWERRPAQERQERTRLFHSQENIITIDMKLANKDVSMLAFTSEQIAAPFL 380
            F  KFN R  +  +L+Y+W   ++R + + +A    K +       +L FLN L+ND+I+LLDE++  + ++K+ + E  +  EW+    + R+E+         +      ++N+ +  LAF + +I + F+
Sbjct:  738 FEQKFNYRRPMYPILKYMWGTDTYRESIKDLADYASKNLEAMNPPLFLRFLNLLMNDAIFLLDEAIQYLSKIKIQQIE-KDRGEWDNLTPEARREKEAGLQMFGQLARFHNIMSNETIGTLAFLTSEIKSLFV 869          
The following BLAST results are available for this feature:
BLAST of CX291457 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
UBE4_ARATH5.506e-6288.19Probable ubiquitin conjugation factor E4 OS=Arabid... [more]
UBE4B_MOUSE7.791e-1630.95Ubiquitin conjugation factor E4 B OS=Mus musculus ... [more]
UBE4B_HUMAN7.791e-1630.95Ubiquitin conjugation factor E4 B OS=Homo sapiens ... [more]
UBE4A_RAT7.546e-1127.07Ubiquitin conjugation factor E4 A OS=Rattus norveg... [more]
UBE4A_BOVIN9.855e-1126.32Ubiquitin conjugation factor E4 A OS=Bos taurus GN... [more]
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Properties
Property NameValue
Genbank descriptionC03008F10SK OF2 Citrus clementina cDNA clone C03008F10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX291457 ID=CX291457; Name=CX291457; organism=Citrus clementina; type=EST; length=385bp
AGTTCTATGACAAGTTTAATATCCGCCATAATATTGCCGATCTCCTTGAG
TACCTATGGCAGGTCCCAAGTCACCGAAATGCTTGGAGGCAGATTGCCAA
GGAAGAGGAAAAGGGTGTTTATCTGAATTTCTTAAATTTCCTGATCAATG
ATAGTATTTATCTTCTTGATGAAAGTCTCAACAAAATTCTTGAACTCAAA
GTGATTGAAGCTGAGATGTCAAATACAGCAGAATGGGAGCGTAGACCAGC
TCAAGAAAGACAGGAGAGAACTCGGCTTTTCCACTCGCAGGAGAATATTA
TAACAATTGATATGAAATTGGCTAACAAAGATGTCAGCATGCTGGCATTC
ACATCAGAGCAGATTGCGGCTCCTTTCCTACTCCC
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