CX291458 | Citrus Genome Database

Overview


Name	CX291458
Unique Name	CX291458
Type	EST
Organism	Citrus clementina (Clementine)
Sequence length	408

Libraries


Library Name	Type
OF2	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

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BLAST of CX291458 vs. ExPASy Swiss-Prot
Match: IF2P_RAT (Eukaryotic translation initiation factor 5B OS=Rattus norvegicus GN=Eif5b PE=1 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 2.580e-35
Identity = 77/135 (57.04%), Postives = 97/135 (71.85%), Query Frame = 3

Query:    3 GV*VQASTLGSLEALLEFSKSDAVKIPVSGISIGPVHKKDVMRASVMLEKKKEYATILAFDVKVTPEARELAEELGVKIFIADIIYLLFDQFTAYINNLXXXXXXXXXXXXVFPCVLKILPNCVFYKKDPIALGV 407
            GV VQASTLGSLEALLEF K+   ++P +GI+IGPVHKKDVM+ASVMLE   +YA ILAFDV++  +A+E+A+ LGV+IF A+IIY LFD FT Y  +             VFPC +KILP  +F  +DPI +GV
Sbjct:  976 GVYVQASTLGSLEALLEFLKTS--EVPYAGINIGPVHKKDVMKASVMLEHDPQYAVILAFDVRIERDAQEMADSLGVRIFSAEIIYHLFDAFTKYRQDYKKQKQEEFKHIAVFPCKMKILPQYIFNSRDPIVIGV 1108

[Close]

BLAST of CX291458 vs. ExPASy Swiss-Prot
Match: IF2P_PONAB (Eukaryotic translation initiation factor 5B OS=Pongo abelii GN=EIF5B PE=2 SV=2)

HSP 1 Score: 147.132 bits (370), Expect = 2.580e-35
Identity = 77/135 (57.04%), Postives = 97/135 (71.85%), Query Frame = 3

Query:    3 GV*VQASTLGSLEALLEFSKSDAVKIPVSGISIGPVHKKDVMRASVMLEKKKEYATILAFDVKVTPEARELAEELGVKIFIADIIYLLFDQFTAYINNLXXXXXXXXXXXXVFPCVLKILPNCVFYKKDPIALGV 407
            GV VQASTLGSLEALLEF K+   ++P +GI+IGPVHKKDVM+ASVMLE   +YA ILAFDV++  +A+E+A+ LGV+IF A+IIY LFD FT Y  +             VFPC +KILP  +F  +DPI +GV
Sbjct:  980 GVYVQASTLGSLEALLEFLKTS--EVPYAGINIGPVHKKDVMKASVMLEHDPQYAVILAFDVRIERDAQEMADSLGVRIFSAEIIYHLFDAFTKYRQDYKKQKQEKFKHIAVFPCKMKILPQYIFNSRDPIVMGV 1112

[Close]

BLAST of CX291458 vs. ExPASy Swiss-Prot
Match: IF2P_MOUSE (Eukaryotic translation initiation factor 5B OS=Mus musculus GN=Eif5b PE=1 SV=2)

HSP 1 Score: 147.132 bits (370), Expect = 2.580e-35
Identity = 77/135 (57.04%), Postives = 97/135 (71.85%), Query Frame = 3

Query:    3 GV*VQASTLGSLEALLEFSKSDAVKIPVSGISIGPVHKKDVMRASVMLEKKKEYATILAFDVKVTPEARELAEELGVKIFIADIIYLLFDQFTAYINNLXXXXXXXXXXXXVFPCVLKILPNCVFYKKDPIALGV 407
            GV VQASTLGSLEALLEF K+   ++P +GI+IGPVHKKDVM+ASVMLE   +YA ILAFDV++  +A+E+A+ LGV+IF A+IIY LFD FT Y  +             VFPC +KILP  +F  +DPI +GV
Sbjct:  976 GVYVQASTLGSLEALLEFLKTS--EVPYAGINIGPVHKKDVMKASVMLEHDPQYAVILAFDVRIERDAQEMADSLGVRIFSAEIIYHLFDAFTKYRQDYKKQKQEEFKHIAVFPCKMKILPQYIFNSRDPIVIGV 1108

[Close]

BLAST of CX291458 vs. ExPASy Swiss-Prot
Match: IF2P_HUMAN (Eukaryotic translation initiation factor 5B OS=Homo sapiens GN=EIF5B PE=1 SV=4)

HSP 1 Score: 147.132 bits (370), Expect = 2.580e-35
Identity = 77/135 (57.04%), Postives = 97/135 (71.85%), Query Frame = 3

Query:    3 GV*VQASTLGSLEALLEFSKSDAVKIPVSGISIGPVHKKDVMRASVMLEKKKEYATILAFDVKVTPEARELAEELGVKIFIADIIYLLFDQFTAYINNLXXXXXXXXXXXXVFPCVLKILPNCVFYKKDPIALGV 407
            GV VQASTLGSLEALLEF K+   ++P +GI+IGPVHKKDVM+ASVMLE   +YA ILAFDV++  +A+E+A+ LGV+IF A+IIY LFD FT Y  +             VFPC +KILP  +F  +DPI +GV
Sbjct:  980 GVYVQASTLGSLEALLEFLKTS--EVPYAGINIGPVHKKDVMKASVMLEHDPQYAVILAFDVRIERDAQEMADSLGVRIFSAEIIYHLFDAFTKYRQDYKKQKQEEFKHIAVFPCKIKILPQYIFNSRDPIVMGV 1112

[Close]

BLAST of CX291458 vs. ExPASy Swiss-Prot
Match: IF2P_SCHPO (Eukaryotic translation initiation factor 5B OS=Schizosaccharomyces pombe GN=SPAC56F8.03 PE=1 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 2.852e-34
Identity = 80/135 (59.26%), Postives = 96/135 (71.11%), Query Frame = 3

Query:    3 GV*VQASTLGSLEALLEFSKSDAVKIPVSGISIGPVHKKDVMRASVMLEKKKEYATILAFDVKVTPEARELAEELGVKIFIADIIYLLFDQFTAYINNLXXXXXXXXXXXXVFPCVLKILPNCVFYKKDPIALGV 407
            GV VQASTLGSLEALLEF K   +KIPV+ ++IGPV+KKDVMR + MLEK KEYA +L FDVKV  +A +LAE+LGVKIF A++IY LFD FTA+   +            VFPCVLK +    F K+DPI LGV
Sbjct:  833 GVSVQASTLGSLEALLEFLKQ--MKIPVASVNIGPVYKKDVMRCATMLEKAKEYALMLCFDVKVDRDAEDLAEQLGVKIFSANVIYHLFDAFTAHQKKILEQKREESSDVAVFPCVLKTV--AAFNKRDPIILGV 963

[Close]

BLAST of CX291458 vs. ExPASy Swiss-Prot
Match: IF2P_YEAST (Eukaryotic translation initiation factor 5B OS=Saccharomyces cerevisiae GN=FUN12 PE=1 SV=2)

HSP 1 Score: 133.65 bits (335), Expect = 2.951e-31
Identity = 74/135 (54.81%), Postives = 91/135 (67.41%), Query Frame = 3

Query:    3 GV*VQASTLGSLEALLEFSKSDAVKIPVSGISIGPVHKKDVMRASVMLEKKKEYATILAFDVKVTPEARELAEELGVKIFIADIIYLLFDQFTAYINNLXXXXXXXXXXXXVFPCVLKILPNCVFYKKDPIALGV 407
            GV VQASTLGSLEALL+F K   +KIPV  I +GPV+K+DVM+AS MLEK  EYA +L FDVKV  EA + AE+ G+KIF AD+IY LFD FTAY   L            +FPCVL+ L   +  K+ P+ +GV
Sbjct:  754 GVVVQASTLGSLEALLDFLKD--MKIPVMSIGLGPVYKRDVMKASTMLEKAPEYAVMLCFDVKVDKEAEQYAEQEGIKIFNADVIYHLFDSFTAYQEKLLEERRKDFLDYAIFPCVLQTLQ--IINKRGPMIIGV 884

[Close]

BLAST of CX291458 vs. ExPASy Swiss-Prot
Match: IF2P_IGNH4 (Probable translation initiation factor IF-2 OS=Ignicoccus hospitalis (strain KIN4/I / DSM 18386 / JCM 14125) GN=infB PE=3 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 1.328e-23
Identity = 60/135 (44.44%), Postives = 84/135 (62.22%), Query Frame = 3

Query:    3 GV*VQASTLGSLEALLEFSKSDAVKIPVSGISIGPVHKKDVMRASVMLEKKKEYATILAFDVKVTPEARELAEELGVKIFIADIIYLLFDQFTAYINNLXXXXXXXXXXXXVFPCVLKILPNCVFYKKDPIALGV 407
            GV V+A TLG+LEAL++F K+    IPV    +GPV K+D++ A  +  K KEY  ILAF+VKV PEA+ELAE+ G+KIF  ++IY L ++F  ++  L            V P  ++ILP  VF + DP  +GV
Sbjct:  363 GVIVKADTLGTLEALVQFLKNRG--IPVRMARVGPVTKRDIVEAMTVKSKNKEYGVILAFNVKVLPEAKELAEKEGIKIFQHNVIYRLIEEFEEWLKALREEEKRKVLETLVRPGKIRILPGFVFRRSDPAIVGV 495

[Close]

BLAST of CX291458 vs. ExPASy Swiss-Prot
Match: IF2P_DICDI (Eukaryotic translation initiation factor 5B OS=Dictyostelium discoideum GN=eif5b PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 8.607e-23
Identity = 58/135 (42.96%), Postives = 83/135 (61.48%), Query Frame = 3

Query:    3 GV*VQASTLGSLEALLEFSKSDAVKIPVSGISIGPVHKKDVMRASVMLEKKKEYATILAFDVKVTPEARELAEELGVKIFIADIIYLLFDQFTAYINNLXXXXXXXXXXXXVFPCVLKILPNCVFYKKDPIALGV 407
            GV VQASTLGSLEA L F K   +KIPV+ ++IGPVHKK +M AS+ML+K  +YA +LAFDVK+   A + A E+ V++   + IYL  ++   +   +            V+PC+L++    VF   +PI +GV
Sbjct:  809 GVSVQASTLGSLEAFLNFLKK--IKIPVANVAIGPVHKKHIMNASIMLDKDPKYAILLAFDVKIEESAIQAANEMKVQVLSDETIYLFEEKLKKHFGAIKEKLRAETASICVWPCILEV--TNVFRNSNPILVGV 939

[Close]

BLAST of CX291458 vs. ExPASy Swiss-Prot
Match: IF2P_THEPD (Probable translation initiation factor IF-2 OS=Thermofilum pendens (strain Hrk 5) GN=infB PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 1.163e-19
Identity = 54/135 (40.00%), Postives = 81/135 (60.00%), Query Frame = 3

Query:    3 GV*VQASTLGSLEALLEFSKSDAVKIPVSGISIGPVHKKDVMRASVMLEKKKEYATILAFDVKVTPEARELAEELGVKIFIADIIYLLFDQFTAYINNLXXXXXXXXXXXXVFPCVLKILPNCVFYKKDPIALGV 407
            GV V+A TLG+LEAL+ + K   + I V+   IGPV K+DV++AS++ EK   YA ILAF+VK+ PEA++ A   G+ +F   I+Y L + +  ++                 P V++ILP  VF ++DPI +GV
Sbjct:  361 GVVVKADTLGTLEALVGYLKKQGIPIRVA--DIGPVVKRDVVQASMVKEKDPLYAAILAFNVKILPEAQDEAARHGIPVFQERIMYKLVENYQKWLQETRDAEVRKAFEKITPPAVVQILPGYVFRRRDPIIVGV 493

[Close]

BLAST of CX291458 vs. ExPASy Swiss-Prot
Match: IF2P_STAMF (Probable translation initiation factor IF-2 OS=Staphylothermus marinus (strain ATCC 43588 / DSM 3639 / F1) GN=infB PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 3.385e-19
Identity = 52/135 (38.52%), Postives = 76/135 (56.30%), Query Frame = 3

Query:    3 GV*VQASTLGSLEALLEFSKSDAVKIPVSGISIGPVHKKDVMRASVMLEKKKEYATILAFDVKVTPEARELAEELGVKIFIADIIYLLFDQFTAYINNLXXXXXXXXXXXXVFPCVLKILPNCVFYKKDPIALGV 407
            GV V+A TLG+LEA++E  K +   IPV    +GPV K DV+ ASV    + EY  I+AF+VK+ PEA E A    VKIF  ++IY L + +  ++  L            + P  ++ILP  +F + +P  +GV
Sbjct:  363 GVVVKADTLGTLEAVVEALKRE--NIPVRLADVGPVSKNDVLEASVSKNHRPEYGVIIAFNVKILPEAEEYAARENVKIFRHNVIYKLIEDYIGWVKQLREQEKIKELESLIRPGKIRILPGYIFRRSNPAIVGV 495

The following BLAST results are available for this feature:

BLAST of CX291458 vs. ExPASy Swiss-Prot

BLAST of CX291458 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 55


Match Name	E-value	Identity	Description
IF2P_RAT	2.580e-35	57.04	Eukaryotic translation initiation factor 5B OS=Rat...	[more]
IF2P_PONAB	2.580e-35	57.04	Eukaryotic translation initiation factor 5B OS=Pon...	[more]
IF2P_MOUSE	2.580e-35	57.04	Eukaryotic translation initiation factor 5B OS=Mus...	[more]
IF2P_HUMAN	2.580e-35	57.04	Eukaryotic translation initiation factor 5B OS=Hom...	[more]
IF2P_SCHPO	2.852e-34	59.26	Eukaryotic translation initiation factor 5B OS=Sch...	[more]
IF2P_YEAST	2.951e-31	54.81	Eukaryotic translation initiation factor 5B OS=Sac...	[more]
IF2P_IGNH4	1.328e-23	44.44	Probable translation initiation factor IF-2 OS=Ign...	[more]
IF2P_DICDI	8.607e-23	42.96	Eukaryotic translation initiation factor 5B OS=Dic...	[more]
IF2P_THEPD	1.163e-19	40.00	Probable translation initiation factor IF-2 OS=The...	[more]
IF2P_STAMF	3.385e-19	38.52	Probable translation initiation factor IF-2 OS=Sta...	[more]

Pages

Properties


Property Name	Value
Genbank description	C03008F11SK OF2 Citrus clementina cDNA clone C03008F11, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CX291458 ID=CX291458; Name=CX291458; organism=Citrus clementina; type=EST; length=408bp
AGGGTGTTTGAGTACAAGCATCTACCTTAGGCTCTTTGGAAGCATTGCTG
GAATTCTCGAAGTCCGATGCTGTTAAGATTCCTGTCAGTGGTATAAGCAT
AGGTCCTGTACATAAGAAAGATGTCATGAGGGCTAGTGTAATGCTTGAGA
AGAAAAAGGAGTATGCAACTATCTTGGCATTTGACGTCAAAGTTACACCG
GAGGCTCGGGAACTTGCAGAAGAACTGGGTGTAAAGATTTTCATTGCTGA
TATTATTTACCTTTTATTCGATCAATTCACAGCTTATATTAATAATCTCA
AGGAGGAGAAGAAGAGGGAAGCTGCTGATGAAGCTGTCTTCCCATGTGTT
CTCAAGATTTTACCAAACTGTGTTTTCTACAAGAAAGATCCAATCGCCTT
GGGGGTTG