CX291464

Overview
NameCX291464
Unique NameCX291464
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length707
Libraries
Library NameType
OF2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX291464 vs. ExPASy Swiss-Prot
Match: NU1C_CITSI (NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic OS=Citrus sinensis GN=ndhA PE=3 SV=1)

HSP 1 Score: 198.749 bits (504), Expect = 2.288e-52
Identity = 100/105 (95.24%), Postives = 102/105 (97.14%), Query Frame = 2
Query:  356 LSNSLSTVDIVVAQSKYGFWGWNLWRQPIGFIVFLISSLAECERLPFDLPEAEEELVAGYQTEYSGIKFGLFYVASYLNLLVSSLFVTVLYLGGSNLSIHTYLFL 670
            LSNSLSTVDIV AQSKYGFWGWNLWRQPIGFIVFLISSLAECERLPFDLPEAEEELVAGYQTEYSGIKFGLFYVASYLNLLVSSLFVTVLYLGGSNLSI  Y+F+
Sbjct:  185 LSNSLSTVDIVGAQSKYGFWGWNLWRQPIGFIVFLISSLAECERLPFDLPEAEEELVAGYQTEYSGIKFGLFYVASYLNLLVSSLFVTVLYLGGSNLSI-PYIFV 288          

HSP 2 Score: 28.4906 bits (62), Expect = 2.288e-52
Identity = 12/12 (100.00%), Postives = 12/12 (100.00%), Query Frame = 1
Query:  655 YIFVPGLVEINK 690
            YIFVPGLVEINK
Sbjct:  285 YIFVPGLVEINK 296          
BLAST of CX291464 vs. ExPASy Swiss-Prot
Match: NU1C_TOBAC (NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic OS=Nicotiana tabacum GN=ndhA PE=3 SV=3)

HSP 1 Score: 196.052 bits (497), Expect = 1.601e-49
Identity = 98/105 (93.33%), Postives = 101/105 (96.19%), Query Frame = 2
Query:  356 LSNSLSTVDIVVAQSKYGFWGWNLWRQPIGFIVFLISSLAECERLPFDLPEAEEELVAGYQTEYSGIKFGLFYVASYLNLLVSSLFVTVLYLGGSNLSIHTYLFL 670
            LSNSLSTVDIV AQSKYGFWGWNLWRQPIGFIVFLISSLAECERLPFDLPEAEEELVAGYQTEYSGIKFGLFY+ASYLNLLVSSLFVTVLYLGG NLSI  Y+F+
Sbjct:  189 LSNSLSTVDIVEAQSKYGFWGWNLWRQPIGFIVFLISSLAECERLPFDLPEAEEELVAGYQTEYSGIKFGLFYIASYLNLLVSSLFVTVLYLGGWNLSI-PYIFV 292          
BLAST of CX291464 vs. ExPASy Swiss-Prot
Match: NU1C_SOLLC (NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic OS=Solanum lycopersicum GN=ndhA PE=3 SV=1)

HSP 1 Score: 196.052 bits (497), Expect = 1.601e-49
Identity = 98/105 (93.33%), Postives = 101/105 (96.19%), Query Frame = 2
Query:  356 LSNSLSTVDIVVAQSKYGFWGWNLWRQPIGFIVFLISSLAECERLPFDLPEAEEELVAGYQTEYSGIKFGLFYVASYLNLLVSSLFVTVLYLGGSNLSIHTYLFL 670
            LSNSLSTVDIV AQSKYGFWGWNLWRQPIGFIVFLISSLAECERLPFDLPEAEEELVAGYQTEYSGIKFGLFY+ASYLNLLVSSLFVTVLYLGG NLSI  Y+F+
Sbjct:  185 LSNSLSTVDIVEAQSKYGFWGWNLWRQPIGFIVFLISSLAECERLPFDLPEAEEELVAGYQTEYSGIKFGLFYIASYLNLLVSSLFVTVLYLGGWNLSI-PYIFV 288          
BLAST of CX291464 vs. ExPASy Swiss-Prot
Match: NU1C_NICSY (NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic OS=Nicotiana sylvestris GN=ndhA PE=3 SV=1)

HSP 1 Score: 196.052 bits (497), Expect = 1.601e-49
Identity = 98/105 (93.33%), Postives = 101/105 (96.19%), Query Frame = 2
Query:  356 LSNSLSTVDIVVAQSKYGFWGWNLWRQPIGFIVFLISSLAECERLPFDLPEAEEELVAGYQTEYSGIKFGLFYVASYLNLLVSSLFVTVLYLGGSNLSIHTYLFL 670
            LSNSLSTVDIV AQSKYGFWGWNLWRQPIGFIVFLISSLAECERLPFDLPEAEEELVAGYQTEYSGIKFGLFY+ASYLNLLVSSLFVTVLYLGG NLSI  Y+F+
Sbjct:  185 LSNSLSTVDIVEAQSKYGFWGWNLWRQPIGFIVFLISSLAECERLPFDLPEAEEELVAGYQTEYSGIKFGLFYIASYLNLLVSSLFVTVLYLGGWNLSI-PYIFV 288          
BLAST of CX291464 vs. ExPASy Swiss-Prot
Match: NU1C_PHAVU (NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic OS=Phaseolus vulgaris GN=ndhA PE=3 SV=1)

HSP 1 Score: 195.667 bits (496), Expect = 2.091e-49
Identity = 96/105 (91.43%), Postives = 102/105 (97.14%), Query Frame = 2
Query:  356 LSNSLSTVDIVVAQSKYGFWGWNLWRQPIGFIVFLISSLAECERLPFDLPEAEEELVAGYQTEYSGIKFGLFYVASYLNLLVSSLFVTVLYLGGSNLSIHTYLFL 670
            LSNSLSTVDIV AQSKYGFWGWNLWRQP+GF+VFLISSLAECERLPFDLPEAEEEL+AGYQTEYSGIKFGLFYVASYLNLLVSSLFVTVLYLGGSN+SI  Y+F+
Sbjct:  185 LSNSLSTVDIVDAQSKYGFWGWNLWRQPMGFLVFLISSLAECERLPFDLPEAEEELIAGYQTEYSGIKFGLFYVASYLNLLVSSLFVTVLYLGGSNISI-PYIFV 288          
BLAST of CX291464 vs. ExPASy Swiss-Prot
Match: NU1C_JASNU (NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic OS=Jasminum nudiflorum GN=ndhA PE=3 SV=1)

HSP 1 Score: 195.667 bits (496), Expect = 2.091e-49
Identity = 99/105 (94.29%), Postives = 100/105 (95.24%), Query Frame = 2
Query:  356 LSNSLSTVDIVVAQSKYGFWGWNLWRQPIGFIVFLISSLAECERLPFDLPEAEEELVAGYQTEYSGIKFGLFYVASYLNLLVSSLFVTVLYLGGSNLSIHTYLFL 670
            LSNS STVDIV AQSKYGFWGWNLWRQPIGFIVFLISSLAECERLPFDLPEAEEELVAGYQTEYSGIKFGLFYVASYLNLLVSSLFVTVLYLGG NLSI  YLF+
Sbjct:  186 LSNSFSTVDIVEAQSKYGFWGWNLWRQPIGFIVFLISSLAECERLPFDLPEAEEELVAGYQTEYSGIKFGLFYVASYLNLLVSSLFVTVLYLGGWNLSI-PYLFV 289          
BLAST of CX291464 vs. ExPASy Swiss-Prot
Match: NU1C_PLAOC (NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic OS=Platanus occidentalis GN=ndhA PE=3 SV=1)

HSP 1 Score: 194.897 bits (494), Expect = 3.566e-49
Identity = 98/105 (93.33%), Postives = 100/105 (95.24%), Query Frame = 2
Query:  356 LSNSLSTVDIVVAQSKYGFWGWNLWRQPIGFIVFLISSLAECERLPFDLPEAEEELVAGYQTEYSGIKFGLFYVASYLNLLVSSLFVTVLYLGGSNLSIHTYLFL 670
            LSNSLSTVDIV AQSKYGFWGWNLWRQPIGF VFLISSLAECERLPFDLPEAEEELVAGYQTEYSGIKFGLFYVASYLNLLVSSLFVTVLYLGG NLSI  Y+F+
Sbjct:  185 LSNSLSTVDIVEAQSKYGFWGWNLWRQPIGFAVFLISSLAECERLPFDLPEAEEELVAGYQTEYSGIKFGLFYVASYLNLLVSSLFVTVLYLGGWNLSI-PYIFI 288          
BLAST of CX291464 vs. ExPASy Swiss-Prot
Match: NU1C_LOTJA (NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic OS=Lotus japonicus GN=ndhA PE=3 SV=1)

HSP 1 Score: 194.897 bits (494), Expect = 3.566e-49
Identity = 94/99 (94.95%), Postives = 98/99 (98.99%), Query Frame = 2
Query:  356 LSNSLSTVDIVVAQSKYGFWGWNLWRQPIGFIVFLISSLAECERLPFDLPEAEEELVAGYQTEYSGIKFGLFYVASYLNLLVSSLFVTVLYLGGSNLSI 652
            LSNSLSTVDIV AQSKYGFWGWNLWRQP+GF+VFLISSLAECERLPFDLPEAEEELVAGYQTEYSGIKFGLFYVASYLNLL+SSLFVTVLYLGGSN+SI
Sbjct:  185 LSNSLSTVDIVDAQSKYGFWGWNLWRQPMGFVVFLISSLAECERLPFDLPEAEEELVAGYQTEYSGIKFGLFYVASYLNLLISSLFVTVLYLGGSNISI 283          
BLAST of CX291464 vs. ExPASy Swiss-Prot
Match: NU1C_SOLTU (NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic OS=Solanum tuberosum GN=ndhA PE=3 SV=1)

HSP 1 Score: 193.741 bits (491), Expect = 7.945e-49
Identity = 97/105 (92.38%), Postives = 100/105 (95.24%), Query Frame = 2
Query:  356 LSNSLSTVDIVVAQSKYGFWGWNLWRQPIGFIVFLISSLAECERLPFDLPEAEEELVAGYQTEYSGIKFGLFYVASYLNLLVSSLFVTVLYLGGSNLSIHTYLFL 670
            LSNS STVDIV AQSKYGFWGWNLWRQPIGFIVFLISSLAECERLPFDLPEAEEELVAGYQTEYSGIKFGLFY+ASYLNLLVSSLFVTVLYLGG NLSI  Y+F+
Sbjct:  185 LSNSSSTVDIVEAQSKYGFWGWNLWRQPIGFIVFLISSLAECERLPFDLPEAEEELVAGYQTEYSGIKFGLFYIASYLNLLVSSLFVTVLYLGGWNLSI-PYIFV 288          
BLAST of CX291464 vs. ExPASy Swiss-Prot
Match: NU1C_SOLBU (NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic OS=Solanum bulbocastanum GN=ndhA PE=3 SV=1)

HSP 1 Score: 193.741 bits (491), Expect = 7.945e-49
Identity = 97/105 (92.38%), Postives = 100/105 (95.24%), Query Frame = 2
Query:  356 LSNSLSTVDIVVAQSKYGFWGWNLWRQPIGFIVFLISSLAECERLPFDLPEAEEELVAGYQTEYSGIKFGLFYVASYLNLLVSSLFVTVLYLGGSNLSIHTYLFL 670
            LSNS STVDIV AQSKYGFWGWNLWRQPIGFIVFLISSLAECERLPFDLPEAEEELVAGYQTEYSGIKFGLFY+ASYLNLLVSSLFVTVLYLGG NLSI  Y+F+
Sbjct:  185 LSNSSSTVDIVEAQSKYGFWGWNLWRQPIGFIVFLISSLAECERLPFDLPEAEEELVAGYQTEYSGIKFGLFYIASYLNLLVSSLFVTVLYLGGWNLSI-PYIFV 288          
The following BLAST results are available for this feature:
BLAST of CX291464 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
NU1C_CITSI2.288e-5295.24NAD(P)H-quinone oxidoreductase subunit 1, chloropl... [more]
NU1C_TOBAC1.601e-4993.33NAD(P)H-quinone oxidoreductase subunit 1, chloropl... [more]
NU1C_SOLLC1.601e-4993.33NAD(P)H-quinone oxidoreductase subunit 1, chloropl... [more]
NU1C_NICSY1.601e-4993.33NAD(P)H-quinone oxidoreductase subunit 1, chloropl... [more]
NU1C_PHAVU2.091e-4991.43NAD(P)H-quinone oxidoreductase subunit 1, chloropl... [more]
NU1C_JASNU2.091e-4994.29NAD(P)H-quinone oxidoreductase subunit 1, chloropl... [more]
NU1C_PLAOC3.566e-4993.33NAD(P)H-quinone oxidoreductase subunit 1, chloropl... [more]
NU1C_LOTJA3.566e-4994.95NAD(P)H-quinone oxidoreductase subunit 1, chloropl... [more]
NU1C_SOLTU7.945e-4992.38NAD(P)H-quinone oxidoreductase subunit 1, chloropl... [more]
NU1C_SOLBU7.945e-4992.38NAD(P)H-quinone oxidoreductase subunit 1, chloropl... [more]

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Properties
Property NameValue
Genbank descriptionC03008G11SK OF2 Citrus clementina cDNA clone C03008G11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX291464 ID=CX291464; Name=CX291464; organism=Citrus clementina; type=EST; length=707bp
GTAATCGAAAATAAAAGGATGGGTTGAACTATCGAGTGATATTTCTACAA
GAGTATTTTATTGAAGGGTTGATTAAGTTATTACTCAACACAGAAAATTT
GAAATTCGTAAAGGATGAGATTAATTCAGAAATACTGTTTTTTTATCCTT
AGAGCAGACAGAATTCCAGTGGTATAATTGGGGATCCTCCGCTAGATTTT
GACTTTATCCATCCTATAACCATATCAAAATCAAAATAACTAATACCGGT
CCGGTCCTTACATTTATTTGTGGCCCTGAGGAGCCGTATGAGGTGAAAAT
CTCATGTACGGTTTTGTAATAGCGATGGAAACCGTAATGTTACCACCGAC
TATGATTATCTAACAGTTTAAGTACAGTTGATATAGTTGTGGCGCAATCA
AAATATGGTTTTTGGGGGTGGAATTTGTGGCGTCAACCTATAGGGTTTAT
CGTTTTTCTAATTTCTTCCCTAGCGGAATGCGAGAGATTACCTTTTGATT
TACCAGAAGCGGAAGAAGAATTAGTAGCCGGTTATCAAACCGAATATTCA
GGAATCAAATTTGGTTTATTTTACGTTGCTTCCTATCTAAATCTACTAGT
TTCCTCATTATTTGTAACAGTTCTTTACTTGGGAGGTTCGAATCTTTCCA
TTCATACATATTTGTTCCTGGGCTGGTTGAAATAAATAAGCGGATGGAAT
CTTTGGA
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