CX291474

Overview
NameCX291474
Unique NameCX291474
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length745
Libraries
Library NameType
OF2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig363 contig Ccv1_Contig363:1..745. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX291474 vs. ExPASy Swiss-Prot
Match: LEUNG_ARATH (Transcriptional corepressor LEUNIG OS=Arabidopsis thaliana GN=LUG PE=1 SV=2)

HSP 1 Score: 242.662 bits (618), Expect = 1.619e-63
Identity = 124/241 (51.45%), Postives = 160/241 (66.39%), Query Frame = 3
Query:   24 RKRKGP-SSSGAANSGCTGNTVGXXXXXXXXXXXXXXXGDAVAMSGSMQHVSNVPKGLMMYGSDGTGGHASSTNQLDDMEHFGDIGSLDDNVESFLSQDDGDGRDLFGSLKRNPSEQATETSKAFSFNEVSSIRKSSSKVTCCHFSSDGKLLASAGHDKKVVVWNMENFQTECTPDDHNHIITDVRFRPNSTQLATSSFDKTVRIWDAAKPNFCLQTYTGHNNHVMSLDFHPKKDDLFCSC 743
            RKRK P SSSG ANS  T NT G               GD ++M  ++ H     K +MM+G++GTG   S +NQL DM+ F + GSLDDNVESFLSQ+DGD RD           +  + SK F+F EV+S+R S++KVTCCHFSSDGK+LASAGHDKK V+W  +  + + T ++H  +ITD+RF P+  +LATSSFDKTVR+WDA    + L+T+ GH++ V SLDFHP KDDL CSC
Sbjct:  524 RKRKQPVSSSGPANSSGTANTAGPSPSSAPSTPSTHTPGDVISMP-NLPHSGGSSKSMMMFGTEGTGTLTSPSNQLADMDRFVEDGSLDDNVESFLSQEDGDQRDAV--------TRCMDVSKGFTFTEVNSVRASTTKVTCCHFSSDGKMLASAGHDKKAVLWYTDTMKPKTTLEEHTAMITDIRFSPSQLRLATSSFDKTVRVWDADNKGYSLRTFMGHSSMVTSLDFHPIKDDLICSC 755          
BLAST of CX291474 vs. ExPASy Swiss-Prot
Match: YY46_ANASP (Uncharacterized WD repeat-containing protein alr3466 OS=Anabaena sp. (strain PCC 7120) GN=alr3466 PE=4 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.898e-12
Identity = 37/96 (38.54%), Postives = 53/96 (55.21%), Query Frame = 3
Query:  429 SSKVTCCHFSSDGKLLASAGHDKKVVVWNMENFQTECTPDDHNHIITDVRFRPNSTQLATSSFDKTVRIWDAAKPNFCLQTYTGHNNHVMSLDFHP 716
            +S V    F+ DG  LAS   D+ V +W + + +  CT   H   +  V F P+ + LA+ S DKTVR+WD +    CL T+ GH N V S+ F+P
Sbjct: 1200 TSWVNSVVFNPDGSTLASGSSDQTVRLWEINSSKCLCTFQGHTSWVNSVVFNPDGSMLASGSSDKTVRLWDISSSK-CLHTFQGHTNWVNSVAFNP 1294          

HSP 2 Score: 68.1662 bits (165), Expect = 5.465e-11
Identity = 39/109 (35.78%), Postives = 59/109 (54.13%), Query Frame = 3
Query:  387 KAFSFNEVSSIRKSSSKVTCCHFSSDGKLLASAGHDKKVVVWNMENFQTECTPDDHNHIITDVRFRPNSTQLATSSFDKTVRIWDAAKPNFCLQTYTGHNNHVMSLDFH 713
            +A +  E+ + +  +S V    FS DGK+LAS   D+ V +W++ + Q   T   H   +  V F PNS  LA+ S D+TVR+WD +    CL  + GH   V S+ F+
Sbjct:  892 EAATGKELLTCKGHNSWVNSVGFSQDGKMLASGSDDQTVRLWDISSGQCLKTFKGHTSRVRSVVFSPNSLMLASGSSDQTVRLWDISSGE-CLYIFQGHTGWVYSVAFN 999          

HSP 3 Score: 68.1662 bits (165), Expect = 5.465e-11
Identity = 38/124 (30.65%), Postives = 64/124 (51.61%), Query Frame = 3
Query:  345 SLKRNPSEQATETSKAFSFNEVSSIRKSSSKVTCCHFSSDGKLLASAGHDKKVVVWNMENFQTECTPDDHNHIITDVRFRPNSTQLATSSFDKTVRIWDAAKPNFCLQTYTGHNNHVMSLDFHP 716
            +L    S+Q     +  S   + + +  +S V    F+ DG +LAS   DK V +W++ + +   T   H + +  V F P+ + LA+ S D+TVR+W+ +    CL T+ GH + V S+ F P
Sbjct: 1214 TLASGSSDQTVRLWEINSSKCLCTFQGHTSWVNSVVFNPDGSMLASGSSDKTVRLWDISSSKCLHTFQGHTNWVNSVAFNPDGSMLASGSGDQTVRLWEISSSK-CLHTFQGHTSWVSSVTFSP 1336          
BLAST of CX291474 vs. ExPASy Swiss-Prot
Match: Y2800_ANASP (Uncharacterized WD repeat-containing protein alr2800 OS=Anabaena sp. (strain PCC 7120) GN=alr2800 PE=4 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 6.456e-12
Identity = 40/107 (37.38%), Postives = 59/107 (55.14%), Query Frame = 3
Query:  420 RKSSSKVTCCHFSSDGKLLASAGHDKKVVVWNMENFQTECTPDDHNHIITDVRFRPNSTQLATSSFDKTVRIWDAAKPNFCLQTYTGHNNHVMSLDFHPKKDDLFCS 740
            R  S+ V    FS DG++LAS G D+ V +W++ +     T   H H +  V F P+   LA++S DKT+++WD  +   CLQT TGH + V  + F P  + L  S
Sbjct:  681 RGHSNWVRFVVFSPDGEILASCGADENVKLWSVRDGVCIKTLTGHEHEVFSVAFHPDGETLASASGDKTIKLWD-IQDGTCLQTLTGHTDWVRCVAFSPDGNTLASS 786          

HSP 2 Score: 68.1662 bits (165), Expect = 5.465e-11
Identity = 38/128 (29.69%), Postives = 63/128 (49.22%), Query Frame = 3
Query:  363 SEQATETSKAFSFNEVSSIRKSSSK---VTCCHFSSDGKLLASAGHDKKVVVWNMENFQTECTPDDHNHIITDVRFRPNSTQLATSSFDKTVRIWDAAKPNFCLQTYTGHNNHVMSLDFHPKKDDLFC 737
            S  A  T K +  ++   +R   S    V    FS+DG+ LAS   D+ + +WN    +   T   H + +  + + P+S  L + S D+T+++WD  + + C++T  GH N V S+ F P    L C
Sbjct:  785 SSAADHTIKLWDVSQGKCLRTLKSHTGWVRSVAFSADGQTLASGSGDRTIKIWNYHTGECLKTYIGHTNSVYSIAYSPDSKILVSGSGDRTIKLWD-CQTHICIKTLHGHTNEVCSVAFSPDGQTLAC 911          
BLAST of CX291474 vs. ExPASy Swiss-Prot
Match: SWD3_SCHPO (Set1 complex component swd3 OS=Schizosaccharomyces pombe GN=swd3 PE=1 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.101e-11
Identity = 36/106 (33.96%), Postives = 59/106 (55.66%), Query Frame = 3
Query:  399 FNEVSSIRKSSSKVTCCHFSSDGKLLASAGHDKKVVVWNMENFQTECTPDDHNHIITDVRFRPNSTQLATSSFDKTVRIWDAAKPNFCLQTYTGHNNHVMSLDFHP 716
            F+E  ++      VTC   S + + +A++  D  + +W+   F+ ECT   H   I+ V++   S  LA++S DKT+RIWD  K    ++   GH N+V S+DF+P
Sbjct:   44 FSEYCTLFGHEKSVTCVSVSPNKRWIATSSSDGTIKIWSALTFRLECTLFGHYRGISQVKWATGSKYLASASDDKTIRIWDFEK-RCSVRCLKGHTNYVSSIDFNP 148          
BLAST of CX291474 vs. ExPASy Swiss-Prot
Match: LIS1_DICDI (Lissencephaly-1 homolog OS=Dictyostelium discoideum GN=lis1 PE=1 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.453e-11
Identity = 39/121 (32.23%), Postives = 64/121 (52.89%), Query Frame = 3
Query:  345 SLKRNPSEQATETSKAFSFNEVS-SIRKSSSKVTCCHFSSDGKLLASAGHDKKVVVWNMENFQTECTPDDHNHIITDVRFRPNSTQLATSSFDKTVRIWDAAKPNFCLQTYTGHNNHVMSL 704
            SL  + SE AT     F   E   +++  ++ V    F   G LLAS   D  + +W+ + +    T   H+H ++ VRF P+  QL +SS DKT+++W+AA   +C++T  GH + V  +
Sbjct:  119 SLMVSASEDATIKVWDFESGEFERTLKGHTNAVQDIDFDKTGNLLASCSADLTIKLWDFQTYDCVKTLHGHDHNVSCVRFTPSGDQLISSSRDKTIKVWEAA-TGYCIKTLVGHEDWVRKI 238          
BLAST of CX291474 vs. ExPASy Swiss-Prot
Match: WD51A_MOUSE (WD repeat-containing protein 51A OS=Mus musculus GN=Wdr51a PE=2 SV=2)

HSP 1 Score: 68.5514 bits (166), Expect = 4.185e-11
Identity = 36/101 (35.64%), Postives = 57/101 (56.44%), Query Frame = 3
Query:  414 SIRKSSSKVTCCHFSSDGKLLASAGHDKKVVVWNMENFQTECTPDDHNHIITDVRFRPNSTQLATSSFDKTVRIWDAAKPNFCLQTYTGHNNHVMSLDFHP 716
            S+ +  + V C  FS DG+L+ SA  DK V +W+  + +   +  +H   +T V F P+ T +A +  D TV++WD A+ +  LQ Y  H+  V +L FHP
Sbjct:  140 SLTQHINWVRCAKFSPDGRLIVSASDDKTVKLWDKTSRECIHSYCEHGGFVTYVDFHPSGTCIAAAGMDNTVKVWD-ARTHRLLQHYQLHSAAVNALSFHP 239          
BLAST of CX291474 vs. ExPASy Swiss-Prot
Match: WDR5B_HUMAN (WD repeat-containing protein 5B OS=Homo sapiens GN=WDR5B PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 7.138e-11
Identity = 33/93 (35.48%), Postives = 59/93 (63.44%), Query Frame = 3
Query:  438 VTCCHFSSDGKLLASAGHDKKVVVWNMENFQTECTPDDHNHIITDVRFRPNSTQLATSSFDKTVRIWDAAKPNFCLQTYTGHNNHVMSLDFHP 716
            V+   FS +G+ LAS+  D+ +++W   + + E T   HN  I+DV +  +S++L ++S DKT+++WD  +   CL+T  GH+N+V   +F+P
Sbjct:   44 VSSVKFSPNGEWLASSSADRLIIIWGAYDGKYEKTLYGHNLEISDVAWSSDSSRLVSASDDKTLKLWD-VRSGKCLKTLKGHSNYVFCCNFNP 135          
BLAST of CX291474 vs. ExPASy Swiss-Prot
Match: WDR5B_PONAB (WD repeat-containing protein 5B OS=Pongo abelii PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 9.322e-11
Identity = 33/93 (35.48%), Postives = 59/93 (63.44%), Query Frame = 3
Query:  438 VTCCHFSSDGKLLASAGHDKKVVVWNMENFQTECTPDDHNHIITDVRFRPNSTQLATSSFDKTVRIWDAAKPNFCLQTYTGHNNHVMSLDFHP 716
            V+   FS +G+ LAS+  D+ +++W   + + E T   HN  I+DV +  +S++L ++S DKT+++WD  +   CL+T  GH+N+V   +F+P
Sbjct:   44 VSSVKFSPNGEWLASSSADRLIIIWGAYDGKYERTLYGHNLEISDVAWSSDSSRLVSASDDKTLKLWD-MRSGKCLKTLKGHSNYVFCCNFNP 135          
BLAST of CX291474 vs. ExPASy Swiss-Prot
Match: WD51A_HUMAN (WD repeat-containing protein 51A OS=Homo sapiens GN=WDR51A PE=2 SV=2)

HSP 1 Score: 67.3958 bits (163), Expect = 9.322e-11
Identity = 35/101 (34.65%), Postives = 55/101 (54.46%), Query Frame = 3
Query:  414 SIRKSSSKVTCCHFSSDGKLLASAGHDKKVVVWNMENFQTECTPDDHNHIITDVRFRPNSTQLATSSFDKTVRIWDAAKPNFCLQTYTGHNNHVMSLDFHP 716
            S+ +  + V C  FS DG+L+ SA  DK V +W+  + +   +  +H   +T V F P+ T +A +  D TV++WD  + +  LQ Y  H+  V  L FHP
Sbjct:  140 SLSQHINWVRCAKFSPDGRLIVSASDDKTVKLWDKSSRECVHSYCEHGGFVTYVDFHPSGTCIAAAGMDNTVKVWD-VRTHRLLQHYQLHSAAVNGLSFHP 239          
BLAST of CX291474 vs. ExPASy Swiss-Prot
Match: WD51A_BOVIN (WD repeat-containing protein 51A OS=Bos taurus GN=WDR51A PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 9.322e-11
Identity = 35/101 (34.65%), Postives = 56/101 (55.45%), Query Frame = 3
Query:  414 SIRKSSSKVTCCHFSSDGKLLASAGHDKKVVVWNMENFQTECTPDDHNHIITDVRFRPNSTQLATSSFDKTVRIWDAAKPNFCLQTYTGHNNHVMSLDFHP 716
            S+ +  + V C  FS DG+L+ SA  DK V +W+  + +   +  +H   +T V F P+ T +A +  D TV++WD  + +  LQ Y  H+  V +L FHP
Sbjct:  140 SLSQHINWVRCAKFSPDGRLIVSASDDKTVKLWDKTSRECVHSYCEHGGFVTYVDFHPSGTCIAAAGMDNTVKVWD-VRTHRLLQHYQLHSAAVNALSFHP 239          
The following BLAST results are available for this feature:
BLAST of CX291474 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 11
Match NameE-valueIdentityDescription
LEUNG_ARATH1.619e-6351.45Transcriptional corepressor LEUNIG OS=Arabidopsis ... [more]
YY46_ANASP2.898e-1238.54Uncharacterized WD repeat-containing protein alr34... [more]
Y2800_ANASP6.456e-1237.38Uncharacterized WD repeat-containing protein alr28... [more]
SWD3_SCHPO1.101e-1133.96Set1 complex component swd3 OS=Schizosaccharomyces... [more]
LIS1_DICDI2.453e-1132.23Lissencephaly-1 homolog OS=Dictyostelium discoideu... [more]
WD51A_MOUSE4.185e-1135.64WD repeat-containing protein 51A OS=Mus musculus G... [more]
WDR5B_HUMAN7.138e-1135.48WD repeat-containing protein 5B OS=Homo sapiens GN... [more]
WDR5B_PONAB9.322e-1135.48WD repeat-containing protein 5B OS=Pongo abelii PE... [more]
WD51A_HUMAN9.322e-1134.65WD repeat-containing protein 51A OS=Homo sapiens G... [more]
WD51A_BOVIN9.322e-1134.65WD repeat-containing protein 51A OS=Bos taurus GN=... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC03009B02SK OF2 Citrus clementina cDNA clone C03009B02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX291474 ID=CX291474; Name=CX291474; organism=Citrus clementina; type=EST; length=745bp
GAGGCCGCACCCCAACAGAATACAGAAAAAGGAAAGGGCCCTCTTCTTCT
GGAGCTGCTAATAGTGGTTGCACTGGAAACACCGTTGGCCCTTCTCCAAA
TTCCCAACCATCTACCCCATCAACTCATACACCTGGTGATGCCGTAGCCA
TGTCAGGCAGTATGCAGCATGTTAGTAACGTGCCTAAAGGTTTGATGATG
TATGGTTCTGATGGAACAGGTGGTCATGCATCATCGACAAACCAGCTGGA
TGACATGGAACATTTTGGAGATATTGGCTCCTTAGATGATAATGTGGAAT
CTTTTCTCTCTCAAGATGATGGAGATGGAAGGGATCTGTTTGGCTCATTG
AAACGGAACCCTTCCGAACAAGCTACTGAAACTTCCAAAGCTTTCTCATT
CAACGAAGTTAGTTCAATACGTAAAAGTAGTAGCAAAGTTACCTGTTGTC
ATTTCTCTTCAGATGGAAAGTTATTGGCCAGTGCTGGGCATGACAAGAAG
GTTGTTGTTTGGAACATGGAAAATTTTCAAACTGAATGCACTCCAGATGA
TCACAATCATATAATTACTGATGTTCGCTTCAGACCAAATTCAACTCAGC
TAGCAACATCTTCATTTGATAAGACAGTGCGAATTTGGGATGCTGCTAAA
CCAAACTTTTGCTTGCAGACTTATACAGGGCATAACAATCACGTGATGTC
CCTTGACTTCCACCCTAAGAAAGATGACCTTTTCTGCTCATGTGA
back to top