CX291486

Overview
NameCX291486
Unique NameCX291486
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length673
Libraries
Library NameType
OF2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig364 contig Ccv1_Contig364:1..673. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX291486 vs. ExPASy Swiss-Prot
Match: PGLR_VITVI (Probable polygalacturonase OS=Vitis vinifera GN=GSVIVT00026920001 PE=1 SV=1)

HSP 1 Score: 260.381 bits (664), Expect = 6.288e-69
Identity = 130/221 (58.82%), Postives = 156/221 (70.59%), Query Frame = 2
Query:   14 ALLYVPPGVYLTGSFNLTSHMTLYLAKGAVIKATQDTWNWPLIAPLPSYXXXXXXXXXXYMSFIHGDGLQDVVITGENGTIDGQGAIWWNMWRQRTLPFTRPNLIEFMNSRSIIISNVIFQNSPFWNIHPVYCSNVVIRYVTILAPADSPNTDGIDPDSSSNVCIEDSYISTGDDLVAVKSGWDEYGIAYGHPSSGITIRRVTGSSPFSG-IAVGSETSGG 673
            A LYVP G +LTGSF+LTSH TL+L + AV+ A+QD   WP+I PLPSY          Y S I G  L DV+ITG+NGTIDGQG +WW  +    L +TRP LIE M S  I ISN+   NSP WN+HPVY  N++I+ +TILAP  SPNTDGI+PDS +N  IED YI +GDD VAVKSGWDEYGIAYG P+  + IRR+T  SP+S  IA+GSE SGG
Sbjct:   98 AQLYVPAGKWLTGSFSLTSHFTLFLHRDAVLLASQDISQWPVIKPLPSYGRGRDAAAGRYTSLIFGTNLTDVIITGDNGTIDGQGGLWWQRFHGGKLKYTRPYLIELMYSADIQISNLTLLNSPSWNVHPVYSRNILIQGITILAPVRSPNTDGINPDSCTNTRIEDCYIVSGDDCVAVKSGWDEYGIAYGMPTKQLVIRRLTCISPYSAVIALGSEMSGG 318          
BLAST of CX291486 vs. ExPASy Swiss-Prot
Match: ADPG2_ARATH (Polygalacturonase ADPG2 OS=Arabidopsis thaliana GN=ADPG2 PE=2 SV=2)

HSP 1 Score: 94.3597 bits (233), Expect = 5.968e-19
Identity = 54/153 (35.29%), Postives = 85/153 (55.56%), Query Frame = 2
Query:  212 DGLQDVVITG-ENGTIDGQGAIWW--NMWRQRTLPFTR-PNLIEFMNSRSIIISNVIFQNSPFWNIHPVYCSNVVIRYVTILAPADSPNTDGIDPDSSSNVCIEDSYISTGDDLVAVKSGWDEYGIAYGHPSSGITIRRVTGSSPFSGIAVGS 658
            DG+ ++ + G + G +DG G  WW  +  R +  P T+ P  + F NS+S+I+ N+  +N+    I    CSNV +  V + APADSPNTDGI   ++ N+ + +S I TGDD ++++SG           S  + I  +T   P  GI++GS
Sbjct:  153 DGVNNLSVDGGDTGVVDGNGETWWQNSCKRNKAKPCTKAPTALTFYNSKSLIVKNLKVRNAQQIQISIEKCSNVQVSNVVVTAPADSPNTDGIHITNTQNIRVSESIIGTGDDCISIESG-----------SQNVQINDIT-CGPGHGISIGS 293          
BLAST of CX291486 vs. ExPASy Swiss-Prot
Match: PGLR3_ARATH (Probable polygalacturonase At3g15720 OS=Arabidopsis thaliana GN=At3g15720 PE=1 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 9.529e-17
Identity = 53/134 (39.55%), Postives = 77/134 (57.46%), Query Frame = 2
Query:  218 LQDVVITGENGTIDGQGAIWWNMWRQRTLPFTRPNLIEFMNSRSIIISNVIFQNSPFWNIHPVYCSNVVIRYVTILAPADSPNTDGIDPDSSSNVCIEDSYISTGDDLVAVKSGWDEY---GIAYGHPSSGITI 610
            ++ +VI G+ G I+GQG+ WW          +RP  ++F +  ++ +S +   +SP  +IH   C+ V I  + I AP  SPNTDGID  +SSNV I+D  I+TGDD +A+ SG       GI  G P  GI+I
Sbjct:  112 IEGLVIEGD-GEINGQGSSWWEH------KGSRPTALKFRSCNNLRLSGLTHLDSPMAHIHISECNYVTISSLRINAPESSPNTDGIDVGASSNVVIQDCIIATGDDCIAINSGTSNIHISGIDCG-PGHGISI 237          
BLAST of CX291486 vs. ExPASy Swiss-Prot
Match: PGLR1_PECCC (Endo-polygalacturonase OS=Pectobacterium carotovorum subsp. carotovorum GN=peh PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 6.829e-15
Identity = 74/227 (32.60%), Postives = 106/227 (46.70%), Query Frame = 2
Query:   38 VYLTGSFNLTSHMTLYLAKGAVIKATQDTWNWPLIAPLPSYXXXXXXXXXXYMSFIHGDGLQDVVITGENGTIDGQGAI--------WWNMW---RQRTLPFTRPNLIEFMNSRSIIISNVIFQNSPFWNIHPVYCSN--VVIRYVTILAPADSPNTDGIDPDSSSNVCIEDSYISTGDDLVAVKS--GWDE-YGIAYGHPSSGITIRRVTGSSPFSGIAVGSETSG 670
            V+L+G  +L S ++L + KG  ++A  +  ++      PS             +FI      +  I G  GTIDGQG +        WW++    + + L    P LI+   S++  + NV   NSP  N H V+           TI  P+ + NTDGIDP SS N+ I  S ISTGDD VA+K+  G  E   I+  H   G      TG     G+++GSET G
Sbjct:   77 VFLSGPLSLPSGVSLLIDKGVTLRAVNNAKSFE---NAPSSCGVVDTNGKGCDAFITATSTTNSGIYGP-GTIDGQGGVKLQDKKVSWWDLAADAKVKKLKQNTPRLIQINKSKNFTLYNVSLINSP--NFHVVFSDGDGFTAWKTTIKTPSTARNTDGIDPMSSKNITIAHSNISTGDDNVAIKAYKGRSETRNISILHNEFG------TG----HGMSIGSETMG 287          
BLAST of CX291486 vs. ExPASy Swiss-Prot
Match: PGLR2_JUNAS (Polygalacturonase OS=Juniperus ashei GN=JNA2 PE=1 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 4.426e-14
Identity = 59/163 (36.20%), Postives = 81/163 (49.69%), Query Frame = 2
Query:  200 FIHGDGLQDVVITGENGTIDGQGAIWWNMWRQRTLPFT------RPNLIEFMNSRSIIISNVIFQNSPFWNIHPVYCSNVVIRYVTILAPADSPNTDGIDPDSSSNVCIEDSYISTGDDLVAVKSGWDEYGIAYGHPSSGITIRRVTGSSPFSGIAVGSETSG 670
            ++H   L D  + G  G IDGQG  WW+   +     T      RP  I+   S+S+ +  +   NSP +++    C  V I+ + I AP DSPNTDGID  +S    IE   I TGDD VAV +G           SS ITI+ +T   P  G+++GS   G
Sbjct:  140 WMHFARLTDFNLMG-TGVIDGQGNRWWSDQCKTINGRTVCNDKGRPTAIKIDFSKSVTVKELTLTNSPEFHLVFGECDGVKIQGIKIKAPRDSPNTDGIDIFASKRFEIEKCTIGTGDDCVAVGTG-----------SSNITIKDLT-CGPGHGMSIGSLGKG 289          
BLAST of CX291486 vs. ExPASy Swiss-Prot
Match: PGLR2_PECCC (Endo-polygalacturonase OS=Pectobacterium carotovorum subsp. carotovorum GN=pehA PE=1 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 7.550e-14
Identity = 71/227 (31.28%), Postives = 104/227 (45.81%), Query Frame = 2
Query:   38 VYLTGSFNLTSHMTLYLAKGAVIKATQDTWNWPLIAPLPSYXXXXXXXXXXYMSFIHGDGLQDVVITGENGTIDGQGAI--------WWNMW---RQRTLPFTRPNLIEFMNSRSIIISNVIFQNSPFWNIHPVYCSN--VVIRYVTILAPADSPNTDGIDPDSSSNVCIEDSYISTGDDLVAVKS---GWDEYGIAYGHPSSGITIRRVTGSSPFSGIAVGSETSG 670
            V+L+G  +L S ++L + KG  ++A  +  ++      PS             +FI      +  I G  GTIDGQG +        WW +    + + L    P LI+   S++  + NV   NSP  N H V+           TI  P+ + NTDGIDP SS N+ I  S I+TGDD VA+K+     +   I+  H   G      TG     G+++GSET G
Sbjct:   77 VFLSGPLSLPSGVSLLIDKGVTLRAVNNAKSFE---NAPSSCGVVDKNGKGCDAFITAVSTTNSGIYGP-GTIDGQGGVKLQDKKVSWWELAADAKVKKLKQNTPRLIQINKSKNFTLYNVSLINSP--NFHVVFSDGDGFTAWKTTIKTPSTARNTDGIDPMSSKNITIAYSNIATGDDNVAIKAYKGRAETRNISILHNDFG------TG----HGMSIGSETMG 287          
BLAST of CX291486 vs. ExPASy Swiss-Prot
Match: PGLR_RHIRD (Polygalacturonase OS=Rhizobium radiobacter GN=pgl PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 9.860e-14
Identity = 42/102 (41.18%), Postives = 55/102 (53.92%), Query Frame = 2
Query:  374 QNSPFWNIHPVYCSNVVIRYVTILAPADSPNTDGIDPDSSSNVCIEDSYISTGDDLVAVKSGWDEYGIAYGH--PSSGITIRRVTGSSPFSGIAVGSETSGG 673
            +N+  W IHP  C ++     TI+AP DSPNTDG +P+S  NV I     S GDD +AVK+G         H   + GIT+R         G+ +GSE SGG
Sbjct:   41 RNAASWTIHPQGCEDLTAAASTIIAPHDSPNTDGFNPESCRNVMISGVRFSVGDDCIAVKAGKRGPDGEDDHLAETRGITVRHCLMQPGHGGLVIGSEMSGG 142          
BLAST of CX291486 vs. ExPASy Swiss-Prot
Match: PGLR2_CHAOB (Polygalacturonase OS=Chamaecyparis obtusa PE=1 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 9.860e-14
Identity = 53/143 (37.06%), Postives = 73/143 (51.05%), Query Frame = 2
Query:  248 GTIDGQGAIWW----NMWRQRTL--PFTRPNLIEFMNSRSIIISNVIFQNSPFWNIHPVYCSNVVIRYVTILAPADSPNTDGIDPDSSSNVCIEDSYISTGDDLVAVKSGWDEYGIAYGHPSSGITIRRVTGSSPFSGIAVGS 658
            G IDGQG  WW     +   RT+     RP  I+   S+S+ +  +   NSP +++    C  V I+ + I AP DSPNTDGID  +S    IE   I TGDD +A+ +G           SS ITI+ +    P  GI++GS
Sbjct:  154 GVIDGQGQQWWAGQCKVVNGRTVCNDRNRPTAIKIDYSKSVTVKELTLMNSPEFHLVFGECEGVKIQGLKIKAPRDSPNTDGIDIFASKRFHIEKCVIGTGDDCIAIGTG-----------SSNITIKDLI-CGPGHGISIGS 284          
BLAST of CX291486 vs. ExPASy Swiss-Prot
Match: PGLR_SOLLC (Polygalacturonase-2 OS=Solanum lycopersicum GN=PG2 PE=1 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.288e-13
Identity = 50/156 (32.05%), Postives = 83/156 (53.21%), Query Frame = 2
Query:  212 DGLQDVVITGENGTIDGQGAIWW--NMWRQRTLPFT-RPNLIEFMNSRSIIISNVIFQNSPFWNIHPVYCSNVVIRYVTILAPADSPNTDGIDPDSSSNVCIEDSYISTGDDLVAVKSGWDEYGIAYGHPSSGITIRRVTGSSPFSGIAVGSETSG 670
            D +Q++V+ G  GTI+G G +WW  +    ++LP    P  + F N +++ ++N+  +N+   +I    C+NVV   + I A A SPNTDG+   ++  + I D+ I TGDD +++ SG           S  +    +T   P  GI++GS  SG
Sbjct:  161 DSVQNLVVGG-GGTINGNGQVWWPSSCKINKSLPCRDAPTALTFWNCKNLKVNNLKSKNAQQIHIKFESCTNVVASNLMINASAKSPNTDGVHVSNTQYIQISDTIIGTGDDCISIVSG-----------SQNVQATNIT-CGPGHGISIGSLGSG 303          
BLAST of CX291486 vs. ExPASy Swiss-Prot
Match: PGLR_MALDO (Polygalacturonase OS=Malus domestica PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.288e-13
Identity = 43/122 (35.25%), Postives = 69/122 (56.56%), Query Frame = 2
Query:  212 DGLQDVVITGENGTIDGQGAIWW-NMWRQRTLP---FTRPNLIEFMNSRSIIISNVIFQNSPFWNIHPVY--CSNVVIRYVTILAPADSPNTDGIDPDSSSNVCIEDSYISTGDDLVAVKSG 559
            D +Q++++ G  GTI+G G IWW N  + +  P      P  + F    ++++ N+  Q++    IH ++  C NV    +T+ AP DSPNTDGI   ++ N+ I  S I TGDD +++ SG
Sbjct:  182 DNVQNLLVVGP-GTINGNGNIWWKNSCKIKPQPPCGTYAPTAVTFNRCNNLVVKNLNIQDAQ--QIHVIFQNCINVQASCLTVTAPEDSPNTDGIHVTNTQNITISSSVIGTGDDCISIVSG 300          
The following BLAST results are available for this feature:
BLAST of CX291486 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 20
Match NameE-valueIdentityDescription
PGLR_VITVI6.288e-6958.82Probable polygalacturonase OS=Vitis vinifera GN=GS... [more]
ADPG2_ARATH5.968e-1935.29Polygalacturonase ADPG2 OS=Arabidopsis thaliana GN... [more]
PGLR3_ARATH9.529e-1739.55Probable polygalacturonase At3g15720 OS=Arabidopsi... [more]
PGLR1_PECCC6.829e-1532.60Endo-polygalacturonase OS=Pectobacterium carotovor... [more]
PGLR2_JUNAS4.426e-1436.20Polygalacturonase OS=Juniperus ashei GN=JNA2 PE=1 ... [more]
PGLR2_PECCC7.550e-1431.28Endo-polygalacturonase OS=Pectobacterium carotovor... [more]
PGLR_RHIRD9.860e-1441.18Polygalacturonase OS=Rhizobium radiobacter GN=pgl ... [more]
PGLR2_CHAOB9.860e-1437.06Polygalacturonase OS=Chamaecyparis obtusa PE=1 SV=... [more]
PGLR_SOLLC1.288e-1332.05Polygalacturonase-2 OS=Solanum lycopersicum GN=PG2... [more]
PGLR_MALDO1.288e-1335.25Polygalacturonase OS=Malus domestica PE=2 SV=1[more]

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Properties
Property NameValue
Genbank descriptionC03009E03SK OF2 Citrus clementina cDNA clone C03009E03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX291486 ID=CX291486; Name=CX291486; organism=Citrus clementina; type=EST; length=673bp
GGATTCGGCCGAGGCGCTTCTTTATGTTCCTCCTGGGGTGTACTTAACGG
GAAGCTTTAATCTTACCAGTCACATGACTCTTTATTTGGCTAAAGGTGCT
GTTATCAAGGCCACTCAGGATACTTGGAATTGGCCTTTAATTGCCCCTTT
GCCATCGTATGGAAGGGGAAGGGAGCGCCCTGGAGGAAGGTATATGAGTT
TTATTCATGGTGATGGACTTCAGGACGTGGTAATCACTGGTGAGAATGGA
ACAATCGATGGTCAGGGAGCCATCTGGTGGAACATGTGGAGGCAGAGAAC
TCTTCCTTTCACGAGACCAAATCTCATTGAATTTATGAATTCTAGGAGCA
TAATAATTTCCAATGTGATTTTCCAGAATTCACCCTTTTGGAACATTCAC
CCTGTTTATTGCAGCAATGTTGTTATCCGTTATGTAACCATCTTGGCTCC
AGCTGACTCTCCCAATACCGATGGGATTGATCCAGATTCAAGCTCGAATG
TCTGCATAGAGGACTCCTACATTTCAACAGGAGATGATCTTGTGGCGGTA
AAGAGTGGGTGGGATGAGTATGGGATAGCTTATGGTCACCCTAGCTCTGG
CATCACCATTAGGCGGGTAACAGGATCATCTCCATTTTCCGGAATTGCAG
TTGGGAGTGAAACCTCGGGTGGA
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