CX291551

Overview
NameCX291551
Unique NameCX291551
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length710
Libraries
Library NameType
OF2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX291551_ssr18 microsatellite CX291551_ssr18:18..27. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of CX291551 vs. ExPASy Swiss-Prot
Match: MYB4_ORYSJ (Myb-related protein Myb4 OS=Oryza sativa subsp. japonica GN=MYB4 PE=2 SV=2)

HSP 1 Score: 222.631 bits (566), Expect = 1.610e-57
Identity = 97/111 (87.39%), Postives = 108/111 (97.30%), Query Frame = 3
Query:  147 MVRAPCCEKMGLKKGPWTPEEDQILINYVKLYGHGNWRALPKQAGLLRCGKSCRLRWINYLRPDIKRGNFTREEEDTIINLHEMLGNRWSAIAARLPGRTDNEIKNVWHTH 479
            M RAPCCEKMGLKKGPWTPEED++L+ +++ +GHGNWRALPKQAGLLRCGKSCRLRWINYLRPDIKRGNF++EEEDTII+LHE+LGNRWSAIAARLPGRTDNEIKNVWHTH
Sbjct:    1 MGRAPCCEKMGLKKGPWTPEEDKVLVAHIQRHGHGNWRALPKQAGLLRCGKSCRLRWINYLRPDIKRGNFSKEEEDTIIHLHELLGNRWSAIAARLPGRTDNEIKNVWHTH 111          
BLAST of CX291551 vs. ExPASy Swiss-Prot
Match: MYB1_MAIZE (Myb-related protein Zm1 OS=Zea mays PE=2 SV=1)

HSP 1 Score: 191.045 bits (484), Expect = 5.192e-48
Identity = 84/109 (77.06%), Postives = 95/109 (87.16%), Query Frame = 3
Query:  153 RAPCCEKMGLKKGPWTPEEDQILINYVKLYGHGNWRALPKQAGLLRCGKSCRLRWINYLRPDIKRGNFTREEEDTIINLHEMLGNRWSAIAARLPGRTDNEIKNVWHTH 479
            RAPCC K+GL +G WTP+ED  LI Y++ +GH NWRALPKQAGLLRCGKSCRLRWINYLRPD+KRGNFT EEE+ II LH +LGN+WS IAA LPGRTDNEIKNVW+TH
Sbjct:    5 RAPCCAKVGLNRGSWTPQEDMRLIAYIQKHGHTNWRALPKQAGLLRCGKSCRLRWINYLRPDLKRGNFTDEEEEAIIRLHGLLGNKWSKIAACLPGRTDNEIKNVWNTH 113          
BLAST of CX291551 vs. ExPASy Swiss-Prot
Match: MYB5_ARATH (Transcription repressor MYB5 OS=Arabidopsis thaliana GN=MYB5 PE=1 SV=1)

HSP 1 Score: 186.808 bits (473), Expect = 9.791e-47
Identity = 86/152 (56.58%), Postives = 107/152 (70.39%), Query Frame = 3
Query:  132 CGGPKMVR---APCCEKMGLKKGPWTPEEDQILINYVKLYGHGNWRALPKQAGLLRCGKSCRLRWINYLRPDIKRGNFTREEEDTIINLHEMLGNRWSAIAARLPGRTDNEIKNVWHTHXXXXXXXXXXXEPVINNHSNANHVTARSEICSG 578
            CGG K V     PCC KMG+K+GPWT EED+IL++++K  G G WR+LPK+AGLLRCGKSCRLRW+NYLRP +KRG  T +EED I+ LH +LGNRWS IA R+PGRTDNEIKN W+TH           +P  +   +AN++    E  SG
Sbjct:    4 CGGKKPVSKKTTPCCTKMGMKRGPWTVEEDEILVSFIKKEGEGRWRSLPKRAGLLRCGKSCRLRWMNYLRPSVKRGGITSDEEDLILRLHRLLGNRWSLIAGRIPGRTDNEIKNYWNTH-LRKKLLRQGIDPQTHKPLDANNIHKPEEEVSG 154          
BLAST of CX291551 vs. ExPASy Swiss-Prot
Match: MYBP_MAIZE (Myb-related protein P OS=Zea mays GN=P PE=2 SV=1)

HSP 1 Score: 184.111 bits (466), Expect = 6.347e-46
Identity = 80/111 (72.07%), Postives = 93/111 (83.78%), Query Frame = 3
Query:  147 MVRAPCCEKMGLKKGPWTPEEDQILINYVKLYGHGNWRALPKQAGLLRCGKSCRLRWINYLRPDIKRGNFTREEEDTIINLHEMLGNRWSAIAARLPGRTDNEIKNVWHTH 479
            M R PCCEK+GLK+G WT EEDQ+L NY+  +G G+WR+LPK AGLLRCGKSCRLRWINYLR D+KRGN ++EEED II LH  LGNRWS IA+ LPGRTDNEIKN W++H
Sbjct:    1 MGRTPCCEKVGLKRGRWTAEEDQLLANYIAEHGEGSWRSLPKNAGLLRCGKSCRLRWINYLRADVKRGNISKEEEDIIIKLHATLGNRWSLIASHLPGRTDNEIKNYWNSH 111          
BLAST of CX291551 vs. ExPASy Swiss-Prot
Match: MYB30_ANTMA (Myb-related protein 330 OS=Antirrhinum majus GN=MYB330 PE=2 SV=1)

HSP 1 Score: 182.57 bits (462), Expect = 1.847e-45
Identity = 80/111 (72.07%), Postives = 91/111 (81.98%), Query Frame = 3
Query:  147 MVRAPCCEKMGLKKGPWTPEEDQILINYVKLYGHGNWRALPKQAGLLRCGKSCRLRWINYLRPDIKRGNFTREEEDTIINLHEMLGNRWSAIAARLPGRTDNEIKNVWHTH 479
            M R+PCCEK    KG WT EEDQ LINY++ +G G WR+LPK AGLLRCGKSCRLRWINYLRPD+KRGNFT EE++ II LH +LGN+WS IA  LPGRTDNEIKN W+TH
Sbjct:    1 MGRSPCCEKAHTNKGAWTKEEDQRLINYIRAHGEGCWRSLPKAAGLLRCGKSCRLRWINYLRPDLKRGNFTEEEDEIIIKLHSLLGNKWSLIAGALPGRTDNEIKNYWNTH 111          
BLAST of CX291551 vs. ExPASy Swiss-Prot
Match: MYB4_ARATH (Transcription repressor MYB4 OS=Arabidopsis thaliana GN=MYB4 PE=1 SV=1)

HSP 1 Score: 181.415 bits (459), Expect = 4.114e-45
Identity = 79/111 (71.17%), Postives = 91/111 (81.98%), Query Frame = 3
Query:  147 MVRAPCCEKMGLKKGPWTPEEDQILINYVKLYGHGNWRALPKQAGLLRCGKSCRLRWINYLRPDIKRGNFTREEEDTIINLHEMLGNRWSAIAARLPGRTDNEIKNVWHTH 479
            M R+PCCEK    KG WT EED+ L+ Y+K +G G WR+LPK AGLLRCGKSCRLRWINYLRPD+KRGNFT EE++ II LH +LGN+WS IA RLPGRTDNEIKN W+TH
Sbjct:    1 MGRSPCCEKAHTNKGAWTKEEDERLVAYIKAHGEGCWRSLPKAAGLLRCGKSCRLRWINYLRPDLKRGNFTEEEDELIIKLHSLLGNKWSLIAGRLPGRTDNEIKNYWNTH 111          
BLAST of CX291551 vs. ExPASy Swiss-Prot
Match: MYB3_ARATH (Transcription factor MYB3 OS=Arabidopsis thaliana GN=MYB3 PE=1 SV=1)

HSP 1 Score: 180.644 bits (457), Expect = 7.017e-45
Identity = 76/111 (68.47%), Postives = 93/111 (83.78%), Query Frame = 3
Query:  147 MVRAPCCEKMGLKKGPWTPEEDQILINYVKLYGHGNWRALPKQAGLLRCGKSCRLRWINYLRPDIKRGNFTREEEDTIINLHEMLGNRWSAIAARLPGRTDNEIKNVWHTH 479
            M R+PCCEK  + KG WT EEDQ+L++Y++ +G G WR+LP+ AGL RCGKSCRLRW+NYLRPD+KRGNFT EE++ II LH +LGN+WS IA RLPGRTDNEIKN W+TH
Sbjct:    1 MGRSPCCEKAHMNKGAWTKEEDQLLVDYIRKHGEGCWRSLPRAAGLQRCGKSCRLRWMNYLRPDLKRGNFTEEEDELIIKLHSLLGNKWSLIAGRLPGRTDNEIKNYWNTH 111          
BLAST of CX291551 vs. ExPASy Swiss-Prot
Match: MYB38_MAIZE (Myb-related protein Zm38 OS=Zea mays PE=2 SV=1)

HSP 1 Score: 180.259 bits (456), Expect = 9.164e-45
Identity = 77/111 (69.37%), Postives = 92/111 (82.88%), Query Frame = 3
Query:  147 MVRAPCCEKMGLKKGPWTPEEDQILINYVKLYGHGNWRALPKQAGLLRCGKSCRLRWINYLRPDIKRGNFTREEEDTIINLHEMLGNRWSAIAARLPGRTDNEIKNVWHTH 479
            M R+PCCEK    +G WT EED+ L+ Y++ +G G WR+LPK AGLLRCGKSCRLRWINYLRPD+KRGNFT +E+D I+ LH +LGN+WS IAARLPGRTDNEIKN W+TH
Sbjct:    1 MGRSPCCEKAHTNRGAWTKEEDERLVAYIRAHGEGCWRSLPKAAGLLRCGKSCRLRWINYLRPDLKRGNFTADEDDLIVKLHSLLGNKWSLIAARLPGRTDNEIKNYWNTH 111          
BLAST of CX291551 vs. ExPASy Swiss-Prot
Match: MYB12_ARATH (Transcription factor MYB12 OS=Arabidopsis thaliana GN=MYB12 PE=2 SV=1)

HSP 1 Score: 179.874 bits (455), Expect = 1.197e-44
Identity = 78/111 (70.27%), Postives = 91/111 (81.98%), Query Frame = 3
Query:  147 MVRAPCCEKMGLKKGPWTPEEDQILINYVKLYGHGNWRALPKQAGLLRCGKSCRLRWINYLRPDIKRGNFTREEEDTIINLHEMLGNRWSAIAARLPGRTDNEIKNVWHTH 479
            M RAPCCEK+G+K+G WT EEDQIL NY++  G G+WR+LPK AGL RCGKSCRLRWINYLR D+KRGN T EEE+ ++ LH  LGNRWS IA  LPGRTDNEIKN W++H
Sbjct:    1 MGRAPCCEKVGIKRGRWTAEEDQILSNYIQSNGEGSWRSLPKNAGLKRCGKSCRLRWINYLRSDLKRGNITPEEEELVVKLHSTLGNRWSLIAGHLPGRTDNEIKNYWNSH 111          
BLAST of CX291551 vs. ExPASy Swiss-Prot
Match: MYB6_ARATH (Transcription repressor MYB6 OS=Arabidopsis thaliana GN=MYB6 PE=1 SV=1)

HSP 1 Score: 179.489 bits (454), Expect = 1.563e-44
Identity = 78/111 (70.27%), Postives = 91/111 (81.98%), Query Frame = 3
Query:  147 MVRAPCCEKMGLKKGPWTPEEDQILINYVKLYGHGNWRALPKQAGLLRCGKSCRLRWINYLRPDIKRGNFTREEEDTIINLHEMLGNRWSAIAARLPGRTDNEIKNVWHTH 479
            M R+PCCEK    KG WT EEDQ L++Y++ +G G WR+LPK AGLLRCGKSCRLRWINYLRPD+KRGNFT +E+  II LH +LGN+WS IA RLPGRTDNEIKN W+TH
Sbjct:    1 MGRSPCCEKAHTNKGAWTKEEDQRLVDYIRNHGEGCWRSLPKSAGLLRCGKSCRLRWINYLRPDLKRGNFTDDEDQIIIKLHSLLGNKWSLIAGRLPGRTDNEIKNYWNTH 111          
The following BLAST results are available for this feature:
BLAST of CX291551 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 73
Match NameE-valueIdentityDescription
MYB4_ORYSJ1.610e-5787.39Myb-related protein Myb4 OS=Oryza sativa subsp. ja... [more]
MYB1_MAIZE5.192e-4877.06Myb-related protein Zm1 OS=Zea mays PE=2 SV=1[more]
MYB5_ARATH9.791e-4756.58Transcription repressor MYB5 OS=Arabidopsis thalia... [more]
MYBP_MAIZE6.347e-4672.07Myb-related protein P OS=Zea mays GN=P PE=2 SV=1[more]
MYB30_ANTMA1.847e-4572.07Myb-related protein 330 OS=Antirrhinum majus GN=MY... [more]
MYB4_ARATH4.114e-4571.17Transcription repressor MYB4 OS=Arabidopsis thalia... [more]
MYB3_ARATH7.017e-4568.47Transcription factor MYB3 OS=Arabidopsis thaliana ... [more]
MYB38_MAIZE9.164e-4569.37Myb-related protein Zm38 OS=Zea mays PE=2 SV=1[more]
MYB12_ARATH1.197e-4470.27Transcription factor MYB12 OS=Arabidopsis thaliana... [more]
MYB6_ARATH1.563e-4470.27Transcription repressor MYB6 OS=Arabidopsis thalia... [more]

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Properties
Property NameValue
Genbank descriptionC03010E07SK OF2 Citrus clementina cDNA clone C03010E07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX291551 ID=CX291551; Name=CX291551; organism=Citrus clementina; type=EST; length=710bp
TTTGTGTGCCCTCATTTTATATATATATCTACACCTTGATGGCCTAGCTG
AGCTCACATTGTATTCGTGCTTTGAGATCAAACAATTTGATCAGAGAGAA
TTAAAAAGATACATAGCAAAGTTAAATATACTGCGGTGGTCCAAAAATGG
TGAGAGCTCCATGCTGCGAGAAGATGGGATTGAAGAAAGGTCCATGGACT
CCTGAAGAAGATCAAATTTTAATCAATTACGTTAAACTTTATGGCCATGG
CAACTGGCGGGCACTTCCCAAACAAGCAGGTTTATTAAGATGTGGAAAGA
GTTGCCGGCTCCGGTGGATAAATTACTTGCGGCCGGATATTAAACGGGGA
AATTTCACCAGAGAAGAAGAGGACACTATCATCAACCTACATGAAATGCT
CGGAAATAGATGGTCAGCAATCGCAGCAAGACTACCGGGAAGAACGGACA
ACGAAATTAAAAATGTTTGGCACACCCACTTGAAAAAGCGTCTCAAGCAA
AAGCAACAACAAGAGCCCGTGATTAATAATCATAGTAACGCTAATCATGT
TACGGCGAGATCCGAGATCTGCAGCGGCGCCAGTACTCCCGATCGGCAAG
ACTCGACTACTACTTCAAGCGACATGTCGTCCGTCACCTCCTCCGCGGCT
AATAACGCTTGCGTGAAAACAGAGCCGTCGTCGTCCGAAAACATCACGAC
AGCTTGGTTG
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