CX291554

Overview
NameCX291554
Unique NameCX291554
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length589
Libraries
Library NameType
OF2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX291554 vs. ExPASy Swiss-Prot
Match: RS173_ARATH (40S ribosomal protein S17-3 OS=Arabidopsis thaliana GN=RPS17C PE=2 SV=3)

HSP 1 Score: 150.599 bits (379), Expect = 5.419e-36
Identity = 82/128 (64.06%), Postives = 96/128 (75.00%), Query Frame = 2
Query:   98 MGRVRTKTVKKSSRQVIDRHYSRMTLNFHTN*KILEEADIIPSKRLRNTIAGFSFHLMKRILKGPVRGISLMLP*DYRELLMYYASDESFIMIENIMVDPKTSHMIVALGMLVISVIELLEAQITCLP 481
            MGRVRTKTVKKSSRQVI+++YSRMTL+FHTN KILEE  IIPSKRLRN IAGFS HLMKRI KGPVRGISL L  + RE  M +  DES I I+++ VD +T  M+ +LGM  I+ I  +E Q    P
Sbjct:    1 MGRVRTKTVKKSSRQVIEKYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKRIQKGPVRGISLKLQEEERERRMDFVPDESAIKIDDVKVDKETLEMLASLGMSDIAGISQVETQQAMAP 128          
BLAST of CX291554 vs. ExPASy Swiss-Prot
Match: RS172_ARATH (40S ribosomal protein S17-2 OS=Arabidopsis thaliana GN=RPS17B PE=2 SV=3)

HSP 1 Score: 147.902 bits (372), Expect = 3.512e-35
Identity = 82/128 (64.06%), Postives = 93/128 (72.66%), Query Frame = 2
Query:   98 MGRVRTKTVKKSSRQVIDRHYSRMTLNFHTN*KILEEADIIPSKRLRNTIAGFSFHLMKRILKGPVRGISLMLP*DYRELLMYYASDESFIMIENIMVDPKTSHMIVALGMLVISVIELLEAQITCLP 481
            MGRVRTKTVKKSSRQVI+++YSRMTL+FHTN KILEE  IIPSKRLRN IAGFS HLMKRI KGPVRGISL L  + RE  M +  DES I  + I VD +T  M+ +LGM   S I  +E Q    P
Sbjct:    1 MGRVRTKTVKKSSRQVIEKYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKRIQKGPVRGISLKLQEEERERRMDFVPDESAIKTDEIKVDKETLEMLASLGMSDTSGISAVEPQQAMAP 128          
BLAST of CX291554 vs. ExPASy Swiss-Prot
Match: RS174_ARATH (40S ribosomal protein S17-4 OS=Arabidopsis thaliana GN=RPS17D PE=2 SV=3)

HSP 1 Score: 145.976 bits (367), Expect = 1.335e-34
Identity = 81/128 (63.28%), Postives = 92/128 (71.88%), Query Frame = 2
Query:   98 MGRVRTKTVKKSSRQVIDRHYSRMTLNFHTN*KILEEADIIPSKRLRNTIAGFSFHLMKRILKGPVRGISLMLP*DYRELLMYYASDESFIMIENIMVDPKTSHMIVALGMLVISVIELLEAQITCLP 481
            MGRVRTKTVKKSSRQVI+++YSRMTL+FHTN KILEE  IIPSKRLRN IAGFS HLMKRI KGPVRGISL L  + RE  M +  DES I  + I VD +T  M+ +LGM     I  +E Q    P
Sbjct:    1 MGRVRTKTVKKSSRQVIEKYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKRIQKGPVRGISLKLQEEERERRMDFVPDESAIKTDEIKVDKETLEMLASLGMSDTPGISAVEPQQAMAP 128          
BLAST of CX291554 vs. ExPASy Swiss-Prot
Match: RS171_ARATH (40S ribosomal protein S17-1 OS=Arabidopsis thaliana GN=RPS17A PE=1 SV=3)

HSP 1 Score: 144.436 bits (363), Expect = 3.883e-34
Identity = 81/125 (64.80%), Postives = 94/125 (75.20%), Query Frame = 2
Query:   98 MGRVRTKTVKKSSRQVIDRHYSRMTLNFHTN*KILEEADIIPSKRLRNTIAGFSFHLMKRILKGPVRGISLMLP*DYRELLMYYASDESFIMIENIMVDPKTSHMIVALGM---LVISVIELLEA 463
            MGRVRTKTVKKSSRQVI+++YSRMTL+FHTN KILEE  IIPSKRLRN IAGFS HLMKRI KGPVRGISL L  + RE  M +  DES I  + I VD +T  M+ +LGM   L IS ++  +A
Sbjct:    1 MGRVRTKTVKKSSRQVIEKYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKRIQKGPVRGISLKLQEEERERRMDFVPDESAIKTDEIKVDKETLEMLASLGMSDTLGISAVDPQQA 125          
BLAST of CX291554 vs. ExPASy Swiss-Prot
Match: RS17_SOLLC (40S ribosomal protein S17 OS=Solanum lycopersicum GN=RPS17 PE=2 SV=3)

HSP 1 Score: 142.51 bits (358), Expect = 1.476e-33
Identity = 78/111 (70.27%), Postives = 87/111 (78.38%), Query Frame = 2
Query:   98 MGRVRTKTVKKSSRQVIDRHYSRMTLNFHTN*KILEEADIIPSKRLRNTIAGFSFHLMKRILKGPVRGISLMLP*DYRELLMYYASDESFIMIENIMVDPKTSHMIVALGM 430
            MGRVRTKTVKKSSRQVI+R+YS+MTL+FHTN KILEE  IIPSKRLRN IAGFS HLMKRI KGPVRGISL L  + RE  M +  DES I  + I VD +T  M+ ALGM
Sbjct:    1 MGRVRTKTVKKSSRQVIERYYSKMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKRIQKGPVRGISLKLQEEERERRMDFVPDESAIKTDLIEVDKETLDMLSALGM 111          
BLAST of CX291554 vs. ExPASy Swiss-Prot
Match: RS17_BOVIN (40S ribosomal protein S17 OS=Bos taurus GN=RPS17 PE=2 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 3.643e-24
Identity = 59/124 (47.58%), Postives = 84/124 (67.74%), Query Frame = 2
Query:   98 MGRVRTKTVKKSSRQVIDRHYSRMTLNFHTN*KILEEADIIPSKRLRNTIAGFSFHLMKRILKGPVRGISLMLP*DYRELLMYYASDESFIMIENIMVDPKTSHMIVALGMLVISVIELLEAQI 469
            MGRVRTKTVKK++R +I+++Y+R+  +FHTN ++ EE  IIPSK+LRN IAG+  HLMKRI +GPVRGIS+ L  + RE    Y  + S +  E I VDP T  M+  L    +S +++ +  +
Sbjct:    1 MGRVRTKTVKKAARVIIEKYYTRLDNDFHTNKRVCEEIAIIPSKKLRNKIAGYVTHLMKRIQRGPVRGISIKLQEEERERRDNYVPEVSALDQEIIEVDPDTKEMLKLLDFGSLSNLQVTQPTV 124          
BLAST of CX291554 vs. ExPASy Swiss-Prot
Match: RS17A_SCHPO (40S ribosomal protein S17-A OS=Schizosaccharomyces pombe GN=rps17a PE=2 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 3.643e-24
Identity = 61/122 (50.00%), Postives = 82/122 (67.21%), Query Frame = 2
Query:   98 MGRVRTKTVKKSSRQVIDRHYSRMTLNFHTN*KILEEADIIPSKRLRNTIAGFSFHLMKRILKGPVRGISLMLP*DYRELLMYYASDESFIMIENIMVDPKTSHMIVALGMLVISVIELLEA 463
            MGRVRTKT K++SR VI+++Y R+TL+F TN +I++E  II SKRLRN IAG++ HLMKRI +GPVRGIS  L  + RE    Y  + S + ++ + VD  T  M+ +LG   I V  L  A
Sbjct:    1 MGRVRTKTTKRASRVVIEKYYPRLTLDFQTNKRIVDEVAIIASKRLRNKIAGYTTHLMKRIQRGPVRGISFKLQEEERERKDQYVPEVSELEVDRVNVDQDTKDMLKSLGYDQIPVRVLAPA 122          
BLAST of CX291554 vs. ExPASy Swiss-Prot
Match: RS17_PIG (40S ribosomal protein S17 OS=Sus scrofa GN=RPS17 PE=2 SV=3)

HSP 1 Score: 110.923 bits (276), Expect = 4.758e-24
Identity = 59/124 (47.58%), Postives = 84/124 (67.74%), Query Frame = 2
Query:   98 MGRVRTKTVKKSSRQVIDRHYSRMTLNFHTN*KILEEADIIPSKRLRNTIAGFSFHLMKRILKGPVRGISLMLP*DYRELLMYYASDESFIMIENIMVDPKTSHMIVALGMLVISVIELLEAQI 469
            MGRVRTKTVKK++R +I+++Y+R+  +FHTN ++ EE  IIPSK+LRN IAG+  HLMKRI +GPVRGIS+ L  + RE    Y  + S +  E I VDP T  M+  L    +S +++ +  +
Sbjct:    1 MGRVRTKTVKKAARVIIEKYYTRLGNDFHTNKRVCEEIAIIPSKKLRNKIAGYVTHLMKRIQRGPVRGISIKLQEEERERRDNYVPEVSALDQEIIEVDPDTKEMLKLLDFGSLSNLQVTQPTV 124          
BLAST of CX291554 vs. ExPASy Swiss-Prot
Match: RS17_MOUSE (40S ribosomal protein S17 OS=Mus musculus GN=Rps17 PE=1 SV=2)

HSP 1 Score: 110.923 bits (276), Expect = 4.758e-24
Identity = 59/124 (47.58%), Postives = 84/124 (67.74%), Query Frame = 2
Query:   98 MGRVRTKTVKKSSRQVIDRHYSRMTLNFHTN*KILEEADIIPSKRLRNTIAGFSFHLMKRILKGPVRGISLMLP*DYRELLMYYASDESFIMIENIMVDPKTSHMIVALGMLVISVIELLEAQI 469
            MGRVRTKTVKK++R +I+++Y+R+  +FHTN ++ EE  IIPSK+LRN IAG+  HLMKRI +GPVRGIS+ L  + RE    Y  + S +  E I VDP T  M+  L    +S +++ +  +
Sbjct:    1 MGRVRTKTVKKAARVIIEKYYTRLGNDFHTNKRVCEEIAIIPSKKLRNKIAGYVTHLMKRIQRGPVRGISIKLQEEERERRDNYVPEVSALDQEIIEVDPDTKEMLKLLDFGSLSNLQVTQPTV 124          
BLAST of CX291554 vs. ExPASy Swiss-Prot
Match: RS17_ICTPU (40S ribosomal protein S17 OS=Ictalurus punctatus GN=rps17 PE=2 SV=3)

HSP 1 Score: 110.923 bits (276), Expect = 4.758e-24
Identity = 59/124 (47.58%), Postives = 84/124 (67.74%), Query Frame = 2
Query:   98 MGRVRTKTVKKSSRQVIDRHYSRMTLNFHTN*KILEEADIIPSKRLRNTIAGFSFHLMKRILKGPVRGISLMLP*DYRELLMYYASDESFIMIENIMVDPKTSHMIVALGMLVISVIELLEAQI 469
            MGRVRTKTVKK++R +I+++Y+R+  +FHTN ++ EE  IIPSK+LRN IAG+  HLMKRI +GPVRGIS+ L  + RE    Y  + S +  E I VDP T  M+  L    +S +++ +  +
Sbjct:    1 MGRVRTKTVKKAARVIIEKYYTRLGNDFHTNKRVCEEIAIIPSKKLRNKIAGYVTHLMKRIQRGPVRGISIKLQEEERERRDNYVPEVSALDQEIIEVDPDTKEMLKLLDFGSLSNLQVTQPTV 124          
The following BLAST results are available for this feature:
BLAST of CX291554 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 30
Match NameE-valueIdentityDescription
RS173_ARATH5.419e-3664.0640S ribosomal protein S17-3 OS=Arabidopsis thalian... [more]
RS172_ARATH3.512e-3564.0640S ribosomal protein S17-2 OS=Arabidopsis thalian... [more]
RS174_ARATH1.335e-3463.2840S ribosomal protein S17-4 OS=Arabidopsis thalian... [more]
RS171_ARATH3.883e-3464.8040S ribosomal protein S17-1 OS=Arabidopsis thalian... [more]
RS17_SOLLC1.476e-3370.2740S ribosomal protein S17 OS=Solanum lycopersicum ... [more]
RS17_BOVIN3.643e-2447.5840S ribosomal protein S17 OS=Bos taurus GN=RPS17 P... [more]
RS17A_SCHPO3.643e-2450.0040S ribosomal protein S17-A OS=Schizosaccharomyces... [more]
RS17_PIG4.758e-2447.5840S ribosomal protein S17 OS=Sus scrofa GN=RPS17 P... [more]
RS17_MOUSE4.758e-2447.5840S ribosomal protein S17 OS=Mus musculus GN=Rps17... [more]
RS17_ICTPU4.758e-2447.5840S ribosomal protein S17 OS=Ictalurus punctatus G... [more]

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Properties
Property NameValue
Genbank descriptionC03010E10SK OF2 Citrus clementina cDNA clone C03010E10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX291554 ID=CX291554; Name=CX291554; organism=Citrus clementina; type=EST; length=589bp
TTCGCTTTAGATGCCGCAATCTCTTGACCTCTCAAGCTCTTCGTGCTTCA
CCGTCTTTGTCTTCTTCAAGACAGTAGCAGCAGCTTCTTAAACTGAAATG
GGTCGTGTTCGTACCAAGACCGTGAAGAAGTCCTCTCGCCAGGTGATTGA
TAGGCACTACTCAAGAATGACTCTGAACTTCCATACCAACTAGAAGATTT
TGGAGGAGGCTGATATCATCCCCTCGAAGAGGCTGCGTAACACAATTGCT
GGGTTCTCATTCCATTTGATGAAAAGGATTCTGAAGGGTCCAGTTCGTGG
AATCTCCCTTATGTTGCCCTGAGATTACCGCGAACTCCTTATGTACTATG
CGTCTGATGAGTCCTTTATTATGATTGAGAACATTATGGTCGACCCGAAA
ACTTCGCATATGATTGTTGCTCTTGGAATGCTCGTGATTTCTGTAATAGA
ACTCTTGGAAGCGCAGATTACGTGCTTGCCTTAAGCACCAGAGCTGATGG
TATACTTCAAAATGCAAACGCGATAAGGCCAAACTTGAGTGAAACCCACC
CTTGGCATTTGCATGGACATGATTTTTGTGTATTAGGGC
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