CX291555

Overview
NameCX291555
Unique NameCX291555
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length545
Libraries
Library NameType
OF2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CX291555 vs. ExPASy Swiss-Prot
Match: UBIQ_WHEAT (Ubiquitin OS=Triticum aestivum PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 8.060e-17
Identity = 44/52 (84.62%), Postives = 46/52 (88.46%), Query Frame = 2 
Query:  101 NLSVKIEDKEGIPPGQQRSIFAGKQLEDGRTLADYKIQ-ESTLHLVLRLRGG 253
            N+  KI+DKEGIPP QQR IFAGKQLEDGRTLADY IQ ESTLHLVLRLRGG
Sbjct:   25 NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of CX291555 vs. ExPASy Swiss-Prot
Match: UBIQ_TRYCR (Ubiquitin OS=Trypanosoma cruzi PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 8.060e-17
Identity = 44/52 (84.62%), Postives = 46/52 (88.46%), Query Frame = 2 
Query:  101 NLSVKIEDKEGIPPGQQRSIFAGKQLEDGRTLADYKIQ-ESTLHLVLRLRGG 253
            N+  KI+DKEGIPP QQR IFAGKQLEDGRTLADY IQ ESTLHLVLRLRGG
Sbjct:   25 NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of CX291555 vs. ExPASy Swiss-Prot
Match: UBIQ_SOYBN (Ubiquitin OS=Glycine max GN=SUBI-1 PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 8.060e-17
Identity = 44/52 (84.62%), Postives = 46/52 (88.46%), Query Frame = 2 
Query:  101 NLSVKIEDKEGIPPGQQRSIFAGKQLEDGRTLADYKIQ-ESTLHLVLRLRGG 253
            N+  KI+DKEGIPP QQR IFAGKQLEDGRTLADY IQ ESTLHLVLRLRGG
Sbjct:   25 NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of CX291555 vs. ExPASy Swiss-Prot
Match: UBIQ_SOLTU (Ubiquitin OS=Solanum tuberosum GN=UBI3 PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 8.060e-17
Identity = 44/52 (84.62%), Postives = 46/52 (88.46%), Query Frame = 2 
Query:  101 NLSVKIEDKEGIPPGQQRSIFAGKQLEDGRTLADYKIQ-ESTLHLVLRLRGG 253
            N+  KI+DKEGIPP QQR IFAGKQLEDGRTLADY IQ ESTLHLVLRLRGG
Sbjct:   25 NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of CX291555 vs. ExPASy Swiss-Prot
Match: UBIQ_SOLLC (Ubiquitin OS=Solanum lycopersicum GN=UBI3 PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 8.060e-17
Identity = 44/52 (84.62%), Postives = 46/52 (88.46%), Query Frame = 2 
Query:  101 NLSVKIEDKEGIPPGQQRSIFAGKQLEDGRTLADYKIQ-ESTLHLVLRLRGG 253
            N+  KI+DKEGIPP QQR IFAGKQLEDGRTLADY IQ ESTLHLVLRLRGG
Sbjct:   25 NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of CX291555 vs. ExPASy Swiss-Prot
Match: UBIQ_PETCR (Ubiquitin OS=Petroselinum crispum GN=PCUBI4-1 PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 8.060e-17
Identity = 44/52 (84.62%), Postives = 46/52 (88.46%), Query Frame = 2 
Query:  101 NLSVKIEDKEGIPPGQQRSIFAGKQLEDGRTLADYKIQ-ESTLHLVLRLRGG 253
            N+  KI+DKEGIPP QQR IFAGKQLEDGRTLADY IQ ESTLHLVLRLRGG
Sbjct:   25 NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of CX291555 vs. ExPASy Swiss-Prot
Match: UBIQ_PEA (Ubiquitin OS=Pisum sativum GN=PU1 PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 8.060e-17
Identity = 44/52 (84.62%), Postives = 46/52 (88.46%), Query Frame = 2 
Query:  101 NLSVKIEDKEGIPPGQQRSIFAGKQLEDGRTLADYKIQ-ESTLHLVLRLRGG 253
            N+  KI+DKEGIPP QQR IFAGKQLEDGRTLADY IQ ESTLHLVLRLRGG
Sbjct:   25 NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of CX291555 vs. ExPASy Swiss-Prot
Match: UBIQ_ORYSJ (Ubiquitin OS=Oryza sativa subsp. japonica GN=UBQ1 PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 8.060e-17
Identity = 44/52 (84.62%), Postives = 46/52 (88.46%), Query Frame = 2 
Query:  101 NLSVKIEDKEGIPPGQQRSIFAGKQLEDGRTLADYKIQ-ESTLHLVLRLRGG 253
            N+  KI+DKEGIPP QQR IFAGKQLEDGRTLADY IQ ESTLHLVLRLRGG
Sbjct:   25 NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of CX291555 vs. ExPASy Swiss-Prot
Match: UBIQ_NICSY (Ubiquitin OS=Nicotiana sylvestris GN=UBICEP52-7 PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 8.060e-17
Identity = 44/52 (84.62%), Postives = 46/52 (88.46%), Query Frame = 2 
Query:  101 NLSVKIEDKEGIPPGQQRSIFAGKQLEDGRTLADYKIQ-ESTLHLVLRLRGG 253
            N+  KI+DKEGIPP QQR IFAGKQLEDGRTLADY IQ ESTLHLVLRLRGG
Sbjct:   25 NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of CX291555 vs. ExPASy Swiss-Prot
Match: UBIQ_MAIZE (Ubiquitin OS=Zea mays GN=UBF9 PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 8.060e-17
Identity = 44/52 (84.62%), Postives = 46/52 (88.46%), Query Frame = 2 
Query:  101 NLSVKIEDKEGIPPGQQRSIFAGKQLEDGRTLADYKIQ-ESTLHLVLRLRGG 253
            N+  KI+DKEGIPP QQR IFAGKQLEDGRTLADY IQ ESTLHLVLRLRGG
Sbjct:   25 NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76
The following BLAST results are available for this feature:
BLAST of CX291555 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 76
Match NameE-valueIdentityDescription
UBIQ_WHEAT8.060e-1784.62Ubiquitin OS=Triticum aestivum PE=3 SV=1[more]
UBIQ_TRYCR8.060e-1784.62Ubiquitin OS=Trypanosoma cruzi PE=3 SV=1[more]
UBIQ_SOYBN8.060e-1784.62Ubiquitin OS=Glycine max GN=SUBI-1 PE=3 SV=1[more]
UBIQ_SOLTU8.060e-1784.62Ubiquitin OS=Solanum tuberosum GN=UBI3 PE=3 SV=1[more]
UBIQ_SOLLC8.060e-1784.62Ubiquitin OS=Solanum lycopersicum GN=UBI3 PE=3 SV=... [more]
UBIQ_PETCR8.060e-1784.62Ubiquitin OS=Petroselinum crispum GN=PCUBI4-1 PE=3... [more]
UBIQ_PEA8.060e-1784.62Ubiquitin OS=Pisum sativum GN=PU1 PE=3 SV=1[more]
UBIQ_ORYSJ8.060e-1784.62Ubiquitin OS=Oryza sativa subsp. japonica GN=UBQ1 ... [more]
UBIQ_NICSY8.060e-1784.62Ubiquitin OS=Nicotiana sylvestris GN=UBICEP52-7 PE... [more]
UBIQ_MAIZE8.060e-1784.62Ubiquitin OS=Zea mays GN=UBF9 PE=3 SV=1[more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC03010E12SK OF2 Citrus clementina cDNA clone C03010E12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX291555 ID=CX291555; Name=CX291555; organism=Citrus clementina; type=EST; length=545bp
AATGAGAGAAAGAGAGAGGCATCTCTCTTTCTCTCTACCCTCCGACTCTC
TCTTCGCTTCCCCCTTTTTTTTTCTCTCTCTTTATCTGTGGGTGGCTCCT
AATCTCTCTGTCAAGATCGAGGACAAGGAAGGGATCCCACCCGGCCAGCA
GAGGTCCATCTTTGCTGGCAAACAACTTGAGGATGGTCGCACGCTTGCAG
ACTACAAGATCCAGGAGTCAACCCTACATTTGGTCCTCCGTCTCAGGGGT
GGCGTGCAGATTTTTGTAAAAACCCTGACCCGCAAAACATAACTTTGGAG
GTCGAAAGCTCTGACACAATCGACAATGTCAAGGCTAAGATCCAGGACAA
GAAGCGGATTCCGCCACCAGCAGAGGCAGATCTTTTGAAGTTTCCTTTTT
TTTTTTTTTGAAGAGGTTATAAGTTTCTATTGGTTTGTGGATGTCGGGAT
AATTTTTGGAATGGTTCCCTCAGGTTTGACCCTGAGAATGTATTGCGGGT
GTTGGGGAAATTATTTGTGGTTGGCCGGGTAATTTTTGGAAGCCT
back to top