CX291561

Overview
NameCX291561
Unique NameCX291561
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length698
Libraries
Library NameType
OF2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig3409 contig Ccv1_Contig3409:763..1460. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX291561 vs. ExPASy Swiss-Prot
Match: GH35_ORYSJ (Probable indole-3-acetic acid-amido synthetase GH3.5 OS=Oryza sativa subsp. japonica GN=GH3.5 PE=2 SV=1)

HSP 1 Score: 375.17 bits (962), Expect = 1.878e-103
Identity = 173/230 (75.22%), Postives = 203/230 (88.26%), Query Frame = 3
Query:    9 RGFPIGKGKALQFIYGSKQSKTKGGLNAGTATTNVYRSSTFKAEMKAMQSQCCSPDEVIFGPDFHQSLYCHLLCGLIFREEIQLVFSTFAHSLVHAFRTFELVWEELCDDIREGVLSSRITVPSIRAAMSKILKPNPELADLIHKKCSGLSNWYGLIPELFPNAKYLSGIMTGSMEHYLKKLRHYAGDLPLMSADYGSSEGWIGANVNPSLPPELATFAVLPNIGYFEFI 698
            R +PIG+GKALQF+YGSKQ  TKGG+ A TATTN+YR   +K  MK +QSQCCSPDEVIFGPDFHQSLYCHLLCGLI+ EE+  VFSTFAHSLVHAF+TFE VWE+LC DIR+GVLS ++T PSIR A+SKILKPNPELAD I+KKC GLSNWYG+IP L+PNAKY+ GIMTGSME YLKKLRHYAG+LPL+SADYG+SEGW+G+N++P++PPE  T+AVLP +GYFEFI
Sbjct:  128 REYPIGQGKALQFVYGSKQVITKGGILATTATTNLYRRQRYKEGMKDIQSQCCSPDEVIFGPDFHQSLYCHLLCGLIYSEEVHSVFSTFAHSLVHAFQTFEEVWEDLCTDIRDGVLSKKVTAPSIREAVSKILKPNPELADSIYKKCIGLSNWYGVIPALWPNAKYVYGIMTGSMEPYLKKLRHYAGNLPLISADYGASEGWVGSNIDPTVPPEQVTYAVLPQVGYFEFI 357          
BLAST of CX291561 vs. ExPASy Swiss-Prot
Match: GH33_ORYSJ (Probable indole-3-acetic acid-amido synthetase GH3.3 OS=Oryza sativa subsp. japonica GN=GH3.3 PE=2 SV=2)

HSP 1 Score: 329.331 bits (843), Expect = 1.182e-89
Identity = 156/232 (67.24%), Postives = 191/232 (82.33%), Query Frame = 3
Query:    9 RGFPIGKGKALQFIYGSKQSKTKGGLNAGTATTNVYRSSTFKAEMKAMQSQCCSPDEVIFGPDFHQSLYCHLLCGLIFREEIQLVFSTFAHSLVHAFRTFELVWEELCDDIREGVLS-SRITVPSIRAAMSKIL-KPNPELADLIHKKCSGLSNWYGLIPELFPNAKYLSGIMTGSMEHYLKKLRHYAGDLPLMSADYGSSEGWIGANVNPSLPPELATFAVLPNIGYFEFI 698
            R FP+  GKALQFIY S++++TKGGL A TATTNVYRS  FKA M+ +QSQCCSPDEVIFGPDF QSLYCHLL GL+   ++Q+V +TFAHS+V AF+TFE  WE+LC DIR G +S SR+T P++R AM+ +L  PNP LAD + +KC+ LSNWYG+IP L+PNA+Y+ GIMTGSMEHY+KKLRHYAG LPL++A+YG+SEGW+GANV P  PPE ATF VLP+I YFEFI
Sbjct:  139 REFPVENGKALQFIYSSRETRTKGGLTATTATTNVYRSEEFKATMRDIQSQCCSPDEVIFGPDFAQSLYCHLLAGLLAAGDVQIVSATFAHSVVLAFQTFERAWEDLCADIRRGEVSPSRVTSPAVRRAMAALLAAPNPGLADEVARKCAALSNWYGVIPALWPNARYVYGIMTGSMEHYVKKLRHYAGGLPLVAAEYGASEGWVGANVEPGTPPERATFTVLPDIAYFEFI 370          
BLAST of CX291561 vs. ExPASy Swiss-Prot
Match: GH312_ORYSJ (Probable indole-3-acetic acid-amido synthetase GH3.12 OS=Oryza sativa subsp. japonica GN=GH3.12 PE=2 SV=1)

HSP 1 Score: 259.225 bits (661), Expect = 1.502e-68
Identity = 126/235 (53.62%), Postives = 160/235 (68.09%), Query Frame = 3
Query:    9 RGFPIGKGKALQFIYGSKQSKTKGGLNAGTATTNVYRSSTFKAEMKAMQSQ---CCSPDEVIFGPDFHQSLYCHLLCGLIFREEIQLVFSTFAHSLVHAFRTFELVWEELCDDIREGVLS-SRITVPSIRAAMSKILK-PNPELADLIHKKCSGLSNWYGLIPELFPNAKYLSGIMTGSMEHYLKKLRHYAGDLPLMSADYGSSEGWIGANVNPSLPPELATFAVLPNIGYFEFI 698
            R FP+  G+ LQF+YGS+   TKGGL A T  TN+ RS  F A M A        CSP EV+F PDF +SLYCHLLCGL+   E++ V ++FAHS+V A +  E VW ELC DIR G  S +R+T P++R A++ IL  PNP LAD + ++C+ L +W G+IP L+PNA+Y+   MTGSMEHY+KKLRHYAG +PL+S +Y SSEG IG N     PPE   F VLP+  YFEFI
Sbjct:  136 RAFPVEDGRVLQFMYGSRHETTKGGLTATTVMTNLLRSEEFTASMAARSRPRLPSCSPSEVVFSPDFDESLYCHLLCGLLLAGEVRAVSASFAHSIVVALQALERVWRELCADIRRGAASPARVTTPAVRRAVAPILAAPNPALADALERRCAALGDWSGVIPALWPNARYVQATMTGSMEHYVKKLRHYAGGVPLVSGNYASSEGVIGINAEQHAPPESVVFTVLPDAAYFEFI 370          
BLAST of CX291561 vs. ExPASy Swiss-Prot
Match: GH33_ARATH (Indole-3-acetic acid-amido synthetase GH3.3 OS=Arabidopsis thaliana GN=GH3.3 PE=1 SV=1)

HSP 1 Score: 191.045 bits (484), Expect = 5.023e-48
Identity = 96/227 (42.29%), Postives = 138/227 (60.79%), Query Frame = 3
Query:   21 IGKGKALQFIYGSKQSKTKGGLNAGTATTNVYRSSTFKAEMKAMQSQCCSPDEVIFGPDFHQSLYCHLLCGLIFREEIQLVFSTFAHSLVHAFRTFELVWEELCDDIREGVLSSRITVPSIRAAMSKIL-KPNPELADLIHKKCSGLSNWYGLIPELFPNAKYLSGIMTGSMEHYLKKLRHYAGDLPLMSADYGSSEGWIGANVNPSLPPELATFAVLPNIGYFEFI 698
            + KGKAL F++   +SKT GGL A    T+ Y+S  FK       +   SP+E I  PD  QS+Y  +LCGL+ R E+  + + FA  L+ A    +  W+EL DDI  G LSSRI+ P+I+ +MSKIL KP+ ELAD I   C   ++W G+I +++PN KYL  I+TG+M  Y+  L +Y+G LP+    Y SSE + G N+ P   P   ++ ++PN+ YFEF+
Sbjct:  146 LDKGKALYFLFVKTESKTPGGLPARPVLTSYYKSEQFKRRPNDPYNVYTSPNEAILCPDSSQSMYTQMLCGLLMRHEVLRLGAVFASGLLRAIGFLQTNWKELADDISTGTLSSRISDPAIKESMSKILTKPDQELADFITSVCGQDNSWEGIITKIWPNTKYLDVIVTGAMAQYIPMLEYYSGGLPMACTMYASSESYFGINLKPMCKPSEVSYTIMPNMAYFEFL 372          
BLAST of CX291561 vs. ExPASy Swiss-Prot
Match: GH38_ORYSJ (Probable indole-3-acetic acid-amido synthetase GH3.8 OS=Oryza sativa subsp. japonica GN=GH3.8 PE=2 SV=1)

HSP 1 Score: 181.415 bits (459), Expect = 3.980e-45
Identity = 91/226 (40.27%), Postives = 132/226 (58.41%), Query Frame = 3
Query:   21 IGKGKALQFIYGSKQSKTKGGLNAGTATTNVYRSSTFKAEMKAMQSQCCSPDEVIFGPDFHQSLYCHLLCGLIFREEIQLVFSTFAHSLVHAFRTFELVWEELCDDIREGVLSSRITVPSIRAAMSKILKPNPELADLIHKKCSGLSNWYGLIPELFPNAKYLSGIMTGSMEHYLKKLRHYAGDLPLMSADYGSSEGWIGANVNPSLPPELATFAVLPNIGYFEFI 698
            + KGK L F++   ++KT GGL A    T+ Y+S  FK           SP   I   D  QS+Y  ++CGL  R ++  + + FA  L+ A R  +L WE+L DDI  G L+ R+T PS+R A++ IL P+PELA LI  +CS   +W G+I  ++PN KYL  I+TG+M  Y+  L  Y+G LP+    Y SSE + G N+ P   P   ++ ++PN+GYFEF+
Sbjct:  153 LDKGKGLYFLFVKSETKTPGGLTARPVLTSYYKSDHFKNRPYDPYHNYTSPTAAILCADAFQSMYAQMVCGLCQRNDVLRLGAVFASGLLRAIRFLQLNWEQLADDIESGELTPRVTDPSVREAVAAILLPDPELAKLIRAECS-KGDWAGIITRVWPNTKYLDVIVTGAMAQYIPTLEFYSGGLPMACTMYASSECYFGLNLRPMCDPSEVSYTIMPNMGYFEFL 377          
BLAST of CX291561 vs. ExPASy Swiss-Prot
Match: GH38_ORYSI (Probable indole-3-acetic acid-amido synthetase GH3.8 OS=Oryza sativa subsp. indica GN=GH3.8 PE=2 SV=2)

HSP 1 Score: 181.415 bits (459), Expect = 3.980e-45
Identity = 91/226 (40.27%), Postives = 132/226 (58.41%), Query Frame = 3
Query:   21 IGKGKALQFIYGSKQSKTKGGLNAGTATTNVYRSSTFKAEMKAMQSQCCSPDEVIFGPDFHQSLYCHLLCGLIFREEIQLVFSTFAHSLVHAFRTFELVWEELCDDIREGVLSSRITVPSIRAAMSKILKPNPELADLIHKKCSGLSNWYGLIPELFPNAKYLSGIMTGSMEHYLKKLRHYAGDLPLMSADYGSSEGWIGANVNPSLPPELATFAVLPNIGYFEFI 698
            + KGK L F++   ++KT GGL A    T+ Y+S  FK           SP   I   D  QS+Y  ++CGL  R ++  + + FA  L+ A R  +L WE+L DDI  G L+ R+T PS+R A++ IL P+PELA LI  +CS   +W G+I  ++PN KYL  I+TG+M  Y+  L  Y+G LP+    Y SSE + G N+ P   P   ++ ++PN+GYFEF+
Sbjct:  153 LDKGKGLYFLFVKSETKTPGGLTARPVLTSYYKSDHFKNRPYDPYHNYTSPTAAILCADAFQSMYAQMVCGLCQRNDVLRLGAVFASGLLRAIRFLQLNWEQLADDIESGELTPRVTDPSVREAVAAILLPDPELAKLIRAECS-KGDWAGIITRVWPNTKYLDVIVTGAMAQYIPTLEFYSGGLPMACTMYASSECYFGLNLRPMCDPSEVSYTIMPNMGYFEFL 377          
BLAST of CX291561 vs. ExPASy Swiss-Prot
Match: GH31_ARATH (Probable indole-3-acetic acid-amido synthetase GH3.1 OS=Arabidopsis thaliana GN=GH3.1 PE=2 SV=1)

HSP 1 Score: 181.415 bits (459), Expect = 3.980e-45
Identity = 92/226 (40.71%), Postives = 131/226 (57.96%), Query Frame = 3
Query:   21 IGKGKALQFIYGSKQSKTKGGLNAGTATTNVYRSSTFKAEMKAMQSQCCSPDEVIFGPDFHQSLYCHLLCGLIFREEIQLVFSTFAHSLVHAFRTFELVWEELCDDIREGVLSSRITVPSIRAAMSKILKPNPELADLIHKKCSGLSNWYGLIPELFPNAKYLSGIMTGSMEHYLKKLRHYAGDLPLMSADYGSSEGWIGANVNPSLPPELATFAVLPNIGYFEFI 698
            + KGK + F++   ++KT GGL A    T+ Y+S  F++      +   SP+E I  PD  QS+Y  +LCGL+ R  +  V + FA  L+ A R  +L W     DI  G L S IT PSIR  MS ILKP+P LA+ I ++C    NW  +I  ++PN KYL  I+TG+M  Y+  L +Y+G LP+    Y SSE + G N+NP   P   ++ ++PN+ YFEFI
Sbjct:  146 LDKGKGMYFLFVKSETKTPGGLPARPVLTSYYKSEHFRSRPYDPYNVYTSPNEAILCPDSFQSMYTQMLCGLLDRLSVLRVGAVFASGLLRAIRFLQLHWSRFAHDIELGCLDSEITDPSIRQCMSGILKPDPVLAEFIRRECKS-DNWEKIITRIWPNTKYLDVIVTGAMAQYIPTLEYYSGGLPMACTMYASSECYFGLNLNPMSKPSEVSYTIMPNMAYFEFI 370          
BLAST of CX291561 vs. ExPASy Swiss-Prot
Match: GH35_ARATH (Indole-3-acetic acid-amido synthetase GH3.5 OS=Arabidopsis thaliana GN=GH3.5 PE=1 SV=1)

HSP 1 Score: 180.644 bits (457), Expect = 6.789e-45
Identity = 92/223 (41.26%), Postives = 134/223 (60.09%), Query Frame = 3
Query:   30 GKALQFIYGSKQSKTKGGLNAGTATTNVYRSSTFKAEMKAMQSQCCSPDEVIFGPDFHQSLYCHLLCGLIFREEIQLVFSTFAHSLVHAFRTFELVWEELCDDIREGVLSSRITVPSIRAAMSKILKPNPELADLIHKKCSGLSNWYGLIPELFPNAKYLSGIMTGSMEHYLKKLRHYAGDLPLMSADYGSSEGWIGANVNPSLPPELATFAVLPNIGYFEFI 698
            GK + F++   +SKT GGL A    T+ Y+SS FK       +   SP+E I   D +QS+Y  +LCGL   +E+  V + FA   + A +  E  W EL  DIR G LSS IT PS+R A++KILKP+P+LAD +  +C   S+W G+I  L+PN KY+  I+TG+M  Y+  L +Y+  LPL+   Y SSE + G N+ P   P   ++ ++P++ YFEF+
Sbjct:  151 GKGMYFLFIKSESKTPGGLPARPVLTSYYKSSHFKERPYDPYTNYTSPNETILCSDSYQSMYSQMLCGLCQHQEVLRVGAVFASGFIRAIKFLEKHWIELVRDIRTGTLSSLITDPSVREAVAKILKPSPKLADFVEFECK-KSSWQGIITRLWPNTKYVDVIVTGTMSQYIPTLDYYSNGLPLVCTMYASSECYFGVNLRPLCKPSEVSYTLIPSMAYFEFL 372          
BLAST of CX291561 vs. ExPASy Swiss-Prot
Match: GH36_ARATH (Indole-3-acetic acid-amido synthetase GH3.6 OS=Arabidopsis thaliana GN=GH3.6 PE=1 SV=1)

HSP 1 Score: 179.874 bits (455), Expect = 1.158e-44
Identity = 91/226 (40.27%), Postives = 133/226 (58.85%), Query Frame = 3
Query:   21 IGKGKALQFIYGSKQSKTKGGLNAGTATTNVYRSSTFKAEMKAMQSQCCSPDEVIFGPDFHQSLYCHLLCGLIFREEIQLVFSTFAHSLVHAFRTFELVWEELCDDIREGVLSSRITVPSIRAAMSKILKPNPELADLIHKKCSGLSNWYGLIPELFPNAKYLSGIMTGSMEHYLKKLRHYAGDLPLMSADYGSSEGWIGANVNPSLPPELATFAVLPNIGYFEFI 698
            + KGK + F++   +SKT GGL A    T+ Y+SS FK       +   SP++ I   D +QS+Y  +LCGL   +E+  V + FA   + A +  E  W EL  DIR G LSS IT  S+R A+ +ILKP+P+LAD +  +C   S W G+I  L+PN KY+  I+TG+M  Y+  L +Y+  LPL+   Y SSE + G N+ P   P   ++ ++PN+ YFEF+
Sbjct:  148 LDKGKGMYFLFIKSESKTPGGLPARPVLTSYYKSSHFKNRPYDPYTNYTSPNQTILCSDSYQSMYSQMLCGLCQHKEVLRVGAVFASGFIRAIKFLEKHWPELARDIRTGTLSSEITDSSVREAVGEILKPDPKLADFVESECRKTS-WQGIITRLWPNTKYVDVIVTGTMSQYIPTLDYYSNGLPLVCTMYASSECYFGVNLRPLCKPSEVSYTLIPNMAYFEFL 372          
BLAST of CX291561 vs. ExPASy Swiss-Prot
Match: GH32_ARATH (Indole-3-acetic acid-amido synthetase GH3.2 OS=Arabidopsis thaliana GN=GH3.2 PE=1 SV=2)

HSP 1 Score: 177.178 bits (448), Expect = 7.506e-44
Identity = 93/227 (40.97%), Postives = 133/227 (58.59%), Query Frame = 3
Query:   21 IGKGKALQFIYGSKQSKTKGGLNAGTATTNVYRSSTFKAEMKAMQSQCCSPDEVIFGPDFHQSLYCHLLCGLIFREEIQLVFSTFAHSLVHAFRTFELVWEELCDDIREGVLSSRITVPSIRAAMSKIL-KPNPELADLIHKKCSGLSNWYGLIPELFPNAKYLSGIMTGSMEHYLKKLRHYAGDLPLMSADYGSSEGWIGANVNPSLPPELATFAVLPNIGYFEFI 698
            + KGK L F++   +SKT GGL A    T+ Y+S  FK       +   SP+E I   D  QS+Y  +LCGL+ R E+  + + FA  L+ A    +  W+EL  DI  G LSSRI  P+I+  MSKIL KP+ ELA+ +   CS   NW G+I +++PN KYL  I+TG+M  Y+  L +Y+G LP+    Y SSE + G N+ P   P   ++ ++PN+ YFEF+
Sbjct:  147 LDKGKGLYFLFVKSESKTSGGLPARPVLTSYYKSDHFKRRPYDPYNVYTSPNEAILCSDSSQSMYAQMLCGLLMRHEVLRLGAVFASGLLRAISFLQNNWKELARDISTGTLSSRIFDPAIKNRMSKILTKPDQELAEFLVGVCS-QENWEGIITKIWPNTKYLDVIVTGAMAQYIPTLEYYSGGLPMACTMYASSESYFGINLKPMCKPSEVSYTIMPNMAYFEFL 372          
The following BLAST results are available for this feature:
BLAST of CX291561 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 22
Match NameE-valueIdentityDescription
GH35_ORYSJ1.878e-10375.22Probable indole-3-acetic acid-amido synthetase GH3... [more]
GH33_ORYSJ1.182e-8967.24Probable indole-3-acetic acid-amido synthetase GH3... [more]
GH312_ORYSJ1.502e-6853.62Probable indole-3-acetic acid-amido synthetase GH3... [more]
GH33_ARATH5.023e-4842.29Indole-3-acetic acid-amido synthetase GH3.3 OS=Ara... [more]
GH38_ORYSJ3.980e-4540.27Probable indole-3-acetic acid-amido synthetase GH3... [more]
GH38_ORYSI3.980e-4540.27Probable indole-3-acetic acid-amido synthetase GH3... [more]
GH31_ARATH3.980e-4540.71Probable indole-3-acetic acid-amido synthetase GH3... [more]
GH35_ARATH6.789e-4541.26Indole-3-acetic acid-amido synthetase GH3.5 OS=Ara... [more]
GH36_ARATH1.158e-4440.27Indole-3-acetic acid-amido synthetase GH3.6 OS=Ara... [more]
GH32_ARATH7.506e-4440.97Indole-3-acetic acid-amido synthetase GH3.2 OS=Ara... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC03010F07SK OF2 Citrus clementina cDNA clone C03010F07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX291561 ID=CX291561; Name=CX291561; organism=Citrus clementina; type=EST; length=698bp
GATTCGGCCGAGGATTCCCAATTGGGAAAGGAAAGGCCTTACAGTTTATA
TACGGCAGCAAGCAATCTAAAACTAAGGGGGGTCTGAATGCTGGAACTGC
TACTACAAATGTCTATCGCAGTTCAACATTTAAAGCAGAAATGAAGGCGA
TGCAGTCACAATGTTGTAGCCCTGATGAAGTAATCTTTGGTCCTGATTTC
CACCAATCATTATACTGCCATCTCCTATGTGGGCTGATCTTCAGGGAAGA
GATTCAACTTGTATTCTCAACCTTTGCCCATAGTCTTGTTCATGCTTTTC
GGACATTTGAGCTCGTTTGGGAAGAGCTATGTGATGATATAAGGGAAGGG
GTTCTTTCCAGCAGAATCACTGTCCCTTCAATCAGGGCGGCTATGTCAAA
AATTCTCAAGCCAAATCCTGAATTGGCCGATTTGATCCATAAAAAATGCT
CAGGATTGAGTAATTGGTATGGGTTAATACCTGAGCTTTTTCCTAATGCG
AAGTACCTGTCTGGAATCATGACTGGGTCAATGGAGCATTATCTGAAAAA
GTTGAGGCACTATGCAGGGGACCTTCCTCTTATGAGCGCTGATTATGGTT
CTTCTGAGGGGTGGATTGGAGCAAATGTGAATCCAAGTTTGCCCCCAGAG
TTGGCTACGTTTGCTGTGCTTCCTAATATCGGATATTTTGAGTTCATT
back to top