CX291568

Overview
NameCX291568
Unique NameCX291568
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length749
Libraries
Library NameType
OF2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX291568 vs. ExPASy Swiss-Prot
Match: OPRR_PSEAE (Putative transcriptional regulator OS=Pseudomonas aeruginosa GN=PA2220 PE=4 SV=2)

HSP 1 Score: 156.377 bits (394), Expect = 1.549e-37
Identity = 76/173 (43.93%), Postives = 106/173 (61.27%), Query Frame = -1
Query:  231 IKVEIMTDYGLTDIVADRYDIGIRHGDQVAKDMIAVRMXADMKMAIVGSPTYLENKPQPKKPQDLMQHNCINLRLPTLGGFYAWELKKGSREVQVRVEGQLSFNGSYHMXXXXXXXXXXXXLPSDLVQAHVTAGRLVRVLDDWCPTFPGLHXXXXXXXXXXXXXXLVIDSLRY 749
            IKVE   +YG  DIVADR+D G+R GD + KDMIAV +   ++MA+V +P Y    P+P+ P+DL+ HNCIN+R+ + GG YAW+ ++  R V VRV+GQL FN S ++            LP +    H+  GRL+RVL++WCP FPG +              LV+D+LRY
Sbjct:  123 IKVEFDINYGFRDIVADRFDAGVRLGDTIDKDMIAVPIGPPVRMAVVAAPAYFAAHPKPRSPRDLVDHNCINMRMQSGGGLYAWDFQRKDRHVNVRVDGQLIFNTSPNIVDAALAGLGIAWLPEEEFAPHIEEGRLLRVLENWCPLFPGYYLYYPNRRQPSPAFSLVVDALRY 295          
BLAST of CX291568 vs. ExPASy Swiss-Prot
Match: YCJZ_ECOLI (Uncharacterized HTH-type transcriptional regulator ycjZ OS=Escherichia coli (strain K12) GN=ycjZ PE=4 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 7.705e-29
Identity = 69/174 (39.66%), Postives = 95/174 (54.60%), Query Frame = -1
Query:  228 IKVEIMTDYGLTDIVADRYDIGIRHGDQVAKDMIAVRMXADMKMAIVGSPTYLENKPQPKKPQDLMQHNCINLRLPTLGGFYAWELKKGSREVQVRVEGQLSFNGSYHMXXXXXXXXXXXXLPSDLVQAHVTAGRLVRVLDDWCPTFPGLHXXXXXXXXXXXXXXLVIDSLRYR 749
            I +++  DYGLTD+V++R+D G+R G ++ KDMIA+R+  D+ MAIVGSP Y   +  P     L+ H  INL LPT G    W L +G REV+VR+EGQL  N    +            LP D V+  +   +L+RVLD + P  PG H              L ID L+Y+
Sbjct:  123 IDIQLTIDYGLTDVVSERFDAGVRLGGEMDKDMIAIRIGPDIPMAIVGSPDYFSRRSVPTSVSQLIDHQAINLYLPTSGTANRWRLIRGGREVRVRMEGQLLLNTIDLIIDAAIDGHGLAYLPYDQVERAIKEKKLIRVLDKFTPDLPGYHLYYPHRRHAGSAFSLFIDRLKYK 296          
BLAST of CX291568 vs. ExPASy Swiss-Prot
Match: YCAN_ECOLI (Uncharacterized HTH-type transcriptional regulator ycaN OS=Escherichia coli (strain K12) GN=ycaN PE=4 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 7.001e-14
Identity = 46/149 (30.87%), Postives = 73/149 (48.99%), Query Frame = -1
Query:  303 IKVEIMTDYGLTDIVADRYDIGIRHGDQVAKDMIAVRMXADMKMAIVGSPTYLENKPQPKKPQDLMQHNCINLRLPTLGGFYAWELKKGSREVQVRVEGQLSFNGSYHMXXXXXXXXXXXXLPSDLVQAHVTAGRLVRVLDDWCPTFPG 749
            IKVE+ TD  L DIV   +D G+R    V KDMI+V +   +K+ +  +P Y     +P+ P DL+ H C+  R P+ G  + W+  K   E+++ V G +  +                 L  + ++ ++  GRL  VL+DW    PG
Sbjct:  122 IKVELTTDDSLVDIVQQGFDAGVRLSCIVEKDMISVAIGPPVKLCVAATPEYFARYGKPRHPHDLLNHQCVVFRYPS-GKPFHWQFAK---ELEIAVAGNIILDDVDAELEAVLMGAGIGYLLYEQIKEYLDTGRLECVLEDWSTERPG 266          
The following BLAST results are available for this feature:
BLAST of CX291568 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
OPRR_PSEAE1.549e-3743.93Putative transcriptional regulator OS=Pseudomonas ... [more]
YCJZ_ECOLI7.705e-2939.66Uncharacterized HTH-type transcriptional regulator... [more]
YCAN_ECOLI7.001e-1430.87Uncharacterized HTH-type transcriptional regulator... [more]
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Properties
Property NameValue
Genbank descriptionC03010G02SK OF2 Citrus clementina cDNA clone C03010G02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX291568 ID=CX291568; Name=CX291568; organism=Citrus clementina; type=EST; length=749bp
GATTCGGCCGAGGGGCAGAGACTACCACCGGAGCGCCGGACAACCTTGCT
TGAATGATTGAGAGCGGCGTTGCTTACCGCGGATGAAGCAGGAGGCATCG
CATCGCAATGGTATTGTGCCCCTCGGATATGAGTTATTCGGCAGCGGAGC
GAACTGCCGCTTCATTGAAGTCCGCGAGAACTGCCGCGGCACCAGGAAAC
GCTGCGCTACCTTCAGCGCGTTTTCTGACGATAACGCAGCGAATCGATAA
CCAGCGCCAAGGCCCGTGAAGACTCCGAACGACTCGCGTAGTACGCGTGT
AAACCTGGAAACGTTGGGCACCAGTCGTCGAGCACGCGAACAAGGCGTCC
CGCCGTGACGTGAGCCTGCACCAGATCCGATGGCAGGTAGGCAAGACCAT
AGCCCGCCAACGCGGCGTCGAGCATGTGATAGCTGCCGTTGAATGAGAGC
TGGCCCTCCACGCGCACCTGAACTTCACGACTGCCTTTTTTTAGCTCCCA
GGCATAGAAGCCGCCGAGTGTCGGCAAACGCAAATTGATGCAGTTGTGCT
GCATCAGATCCTGAGGCTTCTTCGGCTGCGGCTTGTTCTCCAGGTACGTC
GGCGAGCCGACGATCGCCATCTTCATATCCGCGGNCATGCGAACCGCGAT
CATGTCTTTCGCGACCTGATCGCCATGACGGATGCCGATATCGTAGCGAT
CCGCGACGATATCGGTGAGGCCATAGTCCGTCATGATCTCGACCTTGAT
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