CX291597

Overview
NameCX291597
Unique NameCX291597
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length706
Libraries
Library NameType
OF2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX291597_ssr518 microsatellite CX291597_ssr518:518..537. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of CX291597 vs. ExPASy Swiss-Prot
Match: Y5986_ARATH (Uncharacterized protein At5g39865 OS=Arabidopsis thaliana GN=At5g39865 PE=1 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 8.528e-35
Identity = 78/164 (47.56%), Postives = 105/164 (64.02%), Query Frame = 1
Query:   25 QRVVVYFTSLRVVRSTFEDCKAVRSILRGFRVQLDERDLSMDSSFLNELQRILGG--GGQSKLTLPRVFIGGRYIGGVEEVRQLNETGELKKFVEGLPAAERG------VCNICGGYSFVLCGECDGSHKVYAE-----KGV---GFKSCNACNENGLIRCPSC 468
            +RVV+YFTSLR +R T+EDC  +R IL+   +++DERD+SM S F +EL+++L G       +TLPRVF+G +Y+GGVEE+++LNE GEL+K ++     E G       C  CG   FV C  C GS K+Y E     +GV   GF+ C  CNENGLIRC  C
Sbjct:  225 ERVVLYFTSLRGIRKTYEDCCNIRIILKSLGIRIDERDVSMHSGFKDELKKLLEGKFNNGVGITLPRVFLGNKYLGGVEEIKKLNENGELEKLIKDCEMVEDGSPGFGNECEACGDVRFVPCETCSGSCKLYHEGEEEDEGVTEYGFQRCPYCNENGLIRCHVC 388          
BLAST of CX291597 vs. ExPASy Swiss-Prot
Match: Y3885_ARATH (Uncharacterized protein At3g28850 OS=Arabidopsis thaliana GN=At3g28850 PE=1 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 3.961e-32
Identity = 78/179 (43.58%), Postives = 103/179 (57.54%), Query Frame = 1
Query:   25 QRVVVYFTSLRVVRSTFEDCKAVRSILRGFRVQLDERDLSMDSSFLNELQRILG-----GGGQSKLTLPRVFIGGRYIGGVEEVRQLNETGELKKFVEGLPAAERG------VCNICGGYSFVLCGECDGSHKVY--------------------AEKGVGFKSCNACNENGLIRCPSC 468
            +RV++YFTSLR +R T+E+   VR IL+   +++DERD+SM S F +EL+ +LG     G G   +TLPRVF+G +YIGG EE+R+LNE G+L+K + G    E         C  CG   FV C  C GS KVY                     E+  GF++C  CNENGLIRCP C
Sbjct:  251 ERVILYFTSLRGIRKTYEESCDVRVILKSLGIRVDERDVSMHSGFKDELKELLGEKFNKGVG---ITLPRVFLGRKYIGGAEEIRKLNEDGKLEKLLGGCERVEENQNGNGLECEACGDVRFVPCETCSGSCKVYYEYEDDDDDDDEGDDDESVKEEREYGFQTCPDCNENGLIRCPVC 426          
BLAST of CX291597 vs. ExPASy Swiss-Prot
Match: GRCR1_MOUSE (Glutaredoxin domain-containing cysteine-rich protein 1 OS=Mus musculus GN=Grxcr1 PE=2 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 1.971e-23
Identity = 61/162 (37.65%), Postives = 92/162 (56.79%), Query Frame = 1
Query:   13 PGAD---QRVVVYFTSLRVVRSTFEDCKAVRSILRGFRVQLDERDLSMDSSFLNELQRILGGGGQSKLTLPRVFIGGRYIGGVEEVRQLNETGELKKFVEGLPAAER-GVCNICGGYSFVLCGECDGS-----HKVYAEKGVGFKSCNACNENGLIRCPSCS 471
            P AD    RVV+Y T LRVVR+TFE C+ VR I +  RV+ +E++++++  +  EL        ++  +LP VFI G Y+GG E++  +NE+GEL+  +  +   +    C  CGG+ F+ C  C GS        + +     K C ACNENGL RC +C+
Sbjct:  130 PSADLEFDRVVIYTTCLRVVRTTFERCELVRKIFQNHRVKFEEKNIALNGDYGKELDERCRRVSEAP-SLPVVFIDGHYLGGAEKILSMNESGELQDLLTKIERVQHPHECPSCGGFGFLPCSVCHGSKMSVFRNCFTDAFKALK-CTACNENGLQRCKNCT 289          
BLAST of CX291597 vs. ExPASy Swiss-Prot
Match: GRCR1_HUMAN (Glutaredoxin domain-containing cysteine-rich protein 1 OS=Homo sapiens GN=GRXCR1 PE=2 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 3.361e-23
Identity = 58/154 (37.66%), Postives = 89/154 (57.79%), Query Frame = 1
Query:   28 RVVVYFTSLRVVRSTFEDCKAVRSILRGFRVQLDERDLSMDSSFLNELQRILGGGGQSKLTLPRVFIGGRYIGGVEEVRQLNETGELKKFVEGLPAAER-GVCNICGGYSFVLCGECDGS-----HKVYAEKGVGFKSCNACNENGLIRCPSCS 471
            RVV+Y T LRVVR+TFE C+ VR I +  RV+ +E++++++  +  EL        ++  +LP VFI G Y+GG E++  +NE+GEL+  +  +   +    C  CGG+ F+ C  C GS        + +     K C ACNENGL RC +C+
Sbjct:  138 RVVIYTTCLRVVRTTFERCELVRKIFQNHRVKFEEKNIALNGEYGKELDERCRRVSEAP-SLPVVFIDGHYLGGAEKILSMNESGELQDILTKIERVQHPHECPSCGGFGFLPCSVCHGSKMSMFRNCFTDSFKALK-CTACNENGLQRCKNCA 289          
BLAST of CX291597 vs. ExPASy Swiss-Prot
Match: GRCR1_DROME (Glutaredoxin domain-containing cysteine-rich protein CG31559 OS=Drosophila melanogaster GN=CG31559 PE=1 SV=2)

HSP 1 Score: 96.2857 bits (238), Expect = 1.726e-19
Identity = 50/153 (32.68%), Postives = 90/153 (58.82%), Query Frame = 1
Query:   28 RVVVYFTSLRVVRSTFEDCKAVRSILRGFRVQLDERDLSMDSSFLNELQRILGGGGQSKLTLPRVFIGGRYIGGVEEVRQLNETGELKKFVEGLPA-AERGVCNICGGYSFVLCGECDGSHKV-----YAEKGVGFKSCNACNENGLIRCPSC 468
            +VV+Y TS+ ++R T+  C  V+ ILR   V+ +ERD+ M   +  E+++ +  G   ++ +P++++ G++IG  E V ++NE+GEL++ ++   + A    C  CGGY  + C  C+GS K      +  + V  K C  C+E GL++C +C
Sbjct:  306 KVVLYTTSMGIIRETYTKCANVKQILRTLLVKFEERDVFMSVEYQAEMRQRMQSG---QVRVPQLYVEGQHIGDAETVERMNESGELRQLLKPYKSMASTYTCQTCGGYRLLPCPSCNGSKKSVHRNHFTAEFVALK-CMNCDEVGLVKCHNC 454          
BLAST of CX291597 vs. ExPASy Swiss-Prot
Match: GRCR2_DROME (Glutaredoxin domain-containing cysteine-rich protein CG12206 OS=Drosophila melanogaster GN=CG12206 PE=2 SV=2)

HSP 1 Score: 94.7449 bits (234), Expect = 5.023e-19
Identity = 51/153 (33.33%), Postives = 85/153 (55.56%), Query Frame = 1
Query:   28 RVVVYFTSLRVVRSTFEDCKAVRSILRGFRVQLDERDLSMDSSFLNELQRILGGGGQSKLTLPRVFIGGRYIGGVEEVRQLNETGELKKFVEGLPA-AERGVCNICGGYSFVLCGECDGSHKV-----YAEKGVGFKSCNACNENGLIRCPSC 468
            +VV+Y TS+ ++R T+  C  V+ ILR   ++ +ERD+ M   +  E++  +       + +P++F+ G+ IG    V +LNE+GEL++ +    + A    C  CGGY  + C  C+GS K      +  + V  K C  C+E GLI+CP+C
Sbjct:  434 KVVLYTTSMGIIRDTYAKCANVKKILRTLLIKFEERDIFMSVEYQQEMRERM---QDETIRVPQLFVEGQLIGDANIVERLNESGELRQLLRPYKSIATAYTCQTCGGYRMLPCPACNGSKKSMHRNHFTAEFVALK-CMNCDEVGLIKCPNC 582          
The following BLAST results are available for this feature:
BLAST of CX291597 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
Y5986_ARATH8.528e-3547.56Uncharacterized protein At5g39865 OS=Arabidopsis t... [more]
Y3885_ARATH3.961e-3243.58Uncharacterized protein At3g28850 OS=Arabidopsis t... [more]
GRCR1_MOUSE1.971e-2337.65Glutaredoxin domain-containing cysteine-rich prote... [more]
GRCR1_HUMAN3.361e-2337.66Glutaredoxin domain-containing cysteine-rich prote... [more]
GRCR1_DROME1.726e-1932.68Glutaredoxin domain-containing cysteine-rich prote... [more]
GRCR2_DROME5.023e-1933.33Glutaredoxin domain-containing cysteine-rich prote... [more]
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Properties
Property NameValue
Genbank descriptionC03011B04SK OF2 Citrus clementina cDNA clone C03011B04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX291597 ID=CX291597; Name=CX291597; organism=Citrus clementina; type=EST; length=706bp
ACGATCAGGATCCCGGGAGCGGACCAACGCGTTGTCGTATACTTCACGAG
CCTGCGAGTCGTACGGTCGACCTTCGAAGACTGCAAGGCCGTCCGATCTA
TTCTCCGTGGATTTCGCGTGCAACTCGACGAGCGGGATCTTTCCATGGAC
TCGAGTTTCTTGAACGAGTTACAACGAATCCTCGGCGGCGGTGGTCAAAG
CAAGTTGACTCTGCCTAGGGTTTTTATCGGCGGCAGGTACATCGGTGGAG
TGGAGGAAGTCAGGCAACTTAACGAGACCGGCGAGCTGAAGAAGTTCGTC
GAAGGGTTGCCGGCGGCGGAGCGCGGCGTGTGTAACATATGCGGCGGTTA
TAGTTTCGTTTTGTGCGGCGAATGCGACGGTAGCCATAAGGTTTACGCCG
AAAAAGGCGTCGGCTTTAAGTCGTGTAATGCCTGTAACGAGAACGGACTC
ATCAGGTGCCCTTCGTGTTCTTACGCGCCATTTTAAACCGTCTGATTATT
AGAAATTAGAAACTAAAATATATATATATATATATATTATAATATATTGG
CCTTTCGGGTGTTTTATTTTTAATTTTGGTATTAATCAAAAAAAAAAATT
TTTTTTTGTAGTTATGTTTTTGGGTGAAAATCAGTGTGTTGTATGATAAA
ACCAGAACCGTTGGATTTGTTGCTTAAGATTTGTATTAGCTCCTTTGGCC
CCTGAC
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