CX291701

Overview
NameCX291701
Unique NameCX291701
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length638
Libraries
Library NameType
FlavFr1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig3319 contig Ccv1_Contig3319:74..711. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX291701 vs. ExPASy Swiss-Prot
Match: MCAT_ARATH (Mitochondrial carnitine/acylcarnitine carrier-like protein OS=Arabidopsis thaliana GN=BOU PE=1 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 1.851e-27
Identity = 58/74 (78.38%), Postives = 64/74 (86.49%), Query Frame = 2
Query:  416 MGDIAKDLFSGTVGGAAQLICGHPFDTIKVKLQSQPAPLPGQPPKYAGAMDAVKQTIAAEGPRGLYKGMGAPLA 637
            M D  KDL SGTVGGAAQL+ GHPFDTIKVKLQSQP P PGQ P+Y GA+DAVKQT+A+EG +GLYKGMGAPLA
Sbjct:    1 MADAWKDLASGTVGGAAQLVVGHPFDTIKVKLQSQPTPAPGQLPRYTGAIDAVKQTVASEGTKGLYKGMGAPLA 74          
BLAST of CX291701 vs. ExPASy Swiss-Prot
Match: DIF1_CAEEL (Protein dif-1 OS=Caenorhabditis elegans GN=dif-1 PE=2 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 6.600e-17
Identity = 37/73 (50.68%), Postives = 53/73 (72.60%), Query Frame = 2
Query:  416 MGDIAKDLFSGTVGGAAQLICGHPFDTIKVKLQSQPAPLPGQPPKYAGAMDAVKQTIAAEGPRGLYKGMGAPL 634
            M D+  +  +G VGG+  +I GHPFDT+KV++Q+ P P PG+ P++ GA+D VK+T++ EG   LYKGM APL
Sbjct:    1 MSDVLLNFIAGGVGGSCTVIVGHPFDTVKVRIQTMPMPKPGEKPQFTGALDCVKRTVSKEGFFALYKGMAAPL 73          
BLAST of CX291701 vs. ExPASy Swiss-Prot
Match: MCAT_MACFA (Mitochondrial carnitine/acylcarnitine carrier protein OS=Macaca fascicularis GN=SLC25A20 PE=2 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 5.587e-16
Identity = 36/68 (52.94%), Postives = 48/68 (70.59%), Query Frame = 2
Query:  431 KDLFSGTVGGAAQLICGHPFDTIKVKLQSQPAPLPGQPPKYAGAMDAVKQTIAAEGPRGLYKGMGAPL 634
            K+L +G  GG   +  GHP DT+KV+LQ+QP  LPGQPP Y+G  D  ++T+  EG RGLY+GM AP+
Sbjct:   12 KNLLAGGFGGVCLVFVGHPLDTVKVRLQTQPPSLPGQPPMYSGTFDCFRKTLFREGIRGLYRGMAAPI 79          
BLAST of CX291701 vs. ExPASy Swiss-Prot
Match: MCAT_RAT (Mitochondrial carnitine/acylcarnitine carrier protein OS=Rattus norvegicus GN=Slc25a20 PE=1 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.123e-15
Identity = 35/68 (51.47%), Postives = 48/68 (70.59%), Query Frame = 2
Query:  431 KDLFSGTVGGAAQLICGHPFDTIKVKLQSQPAPLPGQPPKYAGAMDAVKQTIAAEGPRGLYKGMGAPL 634
            K+L +G  GG   +  GHP DT+KV+LQ+QP  LPGQPP Y+G +D  ++T+  EG  GLY+GM AP+
Sbjct:   12 KNLLAGGFGGVCLVFVGHPLDTVKVRLQTQPPSLPGQPPMYSGTIDCFRKTLFREGITGLYRGMAAPI 79          
BLAST of CX291701 vs. ExPASy Swiss-Prot
Match: MCAT_HUMAN (Mitochondrial carnitine/acylcarnitine carrier protein OS=Homo sapiens GN=SLC25A20 PE=1 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 2.773e-15
Identity = 35/68 (51.47%), Postives = 47/68 (69.12%), Query Frame = 2
Query:  431 KDLFSGTVGGAAQLICGHPFDTIKVKLQSQPAPLPGQPPKYAGAMDAVKQTIAAEGPRGLYKGMGAPL 634
            K+L +G  GG   +  GHP DT+KV+LQ+QP  LPGQPP Y+G  D  ++T+  EG  GLY+GM AP+
Sbjct:   12 KNLLAGGFGGVCLVFVGHPLDTVKVRLQTQPPSLPGQPPMYSGTFDCFRKTLFREGITGLYRGMAAPI 79          
BLAST of CX291701 vs. ExPASy Swiss-Prot
Match: COLT_DROME (Congested-like trachea protein OS=Drosophila melanogaster GN=colt PE=2 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.054e-14
Identity = 36/68 (52.94%), Postives = 43/68 (63.24%), Query Frame = 2
Query:  431 KDLFSGTVGGAAQLICGHPFDTIKVKLQSQPAPLPGQPPKYAGAMDAVKQTIAAEGPRGLYKGMGAPL 634
            K   +G  GG   ++ GHP DTIKV+LQ+ P P PG+ P Y G  D   +TI  EG RGLYKGM APL
Sbjct:   17 KSFLTGGFGGICNVLSGHPLDTIKVRLQTMPRPAPGEQPLYRGTFDCAAKTIKNEGVRGLYKGMSAPL 84          
BLAST of CX291701 vs. ExPASy Swiss-Prot
Match: MCAT_MOUSE (Mitochondrial carnitine/acylcarnitine carrier protein OS=Mus musculus GN=Slc25a20 PE=1 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.376e-14
Identity = 34/68 (50.00%), Postives = 47/68 (69.12%), Query Frame = 2
Query:  431 KDLFSGTVGGAAQLICGHPFDTIKVKLQSQPAPLPGQPPKYAGAMDAVKQTIAAEGPRGLYKGMGAPL 634
            K+L +G  GG   +  GHP DT+KV+LQ+QP  L GQPP Y+G +D  ++T+  EG  GLY+GM AP+
Sbjct:   12 KNLLAGGFGGMCLVFVGHPLDTVKVRLQTQPPSLSGQPPMYSGTLDCFRKTLMREGITGLYRGMAAPI 79          
BLAST of CX291701 vs. ExPASy Swiss-Prot
Match: MCFG_DICDI (Mitochondrial substrate carrier family protein G OS=Dictyostelium discoideum GN=mcfG PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 3.748e-12
Identity = 34/68 (50.00%), Postives = 47/68 (69.12%), Query Frame = 2
Query:  431 KDLFSGTVGGAAQLICGHPFDTIKVKLQSQPAPLPGQPPKYAGAMDAVKQTIAAEGPRGLYKGMGAPL 634
            KD+ +G++GG  Q+  GHP DTIKV+LQ+Q        P Y+G MD +K+TI+ EG  GLYKG+ +PL
Sbjct:   15 KDIVAGSIGGVGQVFTGHPLDTIKVRLQTQSV----GNPIYSGTMDCLKKTISQEGFAGLYKGVASPL 78          
The following BLAST results are available for this feature:
BLAST of CX291701 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
MCAT_ARATH1.851e-2778.38Mitochondrial carnitine/acylcarnitine carrier-like... [more]
DIF1_CAEEL6.600e-1750.68Protein dif-1 OS=Caenorhabditis elegans GN=dif-1 P... [more]
MCAT_MACFA5.587e-1652.94Mitochondrial carnitine/acylcarnitine carrier prot... [more]
MCAT_RAT2.123e-1551.47Mitochondrial carnitine/acylcarnitine carrier prot... [more]
MCAT_HUMAN2.773e-1551.47Mitochondrial carnitine/acylcarnitine carrier prot... [more]
COLT_DROME1.054e-1452.94Congested-like trachea protein OS=Drosophila melan... [more]
MCAT_MOUSE1.376e-1450.00Mitochondrial carnitine/acylcarnitine carrier prot... [more]
MCFG_DICDI3.748e-1250.00Mitochondrial substrate carrier family protein G O... [more]
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Properties
Property NameValue
Genbank descriptionC04002D09SK FlavFr1 Citrus clementina cDNA clone C04002D09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX291701 ID=CX291701; Name=CX291701; organism=Citrus clementina; type=EST; length=638bp
CTCGTGCCGAATCGGCACGAGGCAGAGTGGTTGGTTTTTGTCCAGTTAAC
CACTCTCATGTGGCTGTGCCTGTAAATCTGCTTCAAGACTCATTTCTTTA
TTTTTCTTTCCTTTTATTTTAAGATTGTCACAGCCTCCAATATCCCATTA
CCCACCTCCTTCCTTTTTAGTACCTTTTTTTTCTATTGTCATTCCTTTTT
TTCTCTCATTAAAAAAGTAAACCCGAAGAAAAAATAAGAAAAATAAAACC
CAGTTCCTTTTTCCTGGCGTTTTTTTAATTTGTATACCCTCCTTTTAATC
TAATACTTTGTGTTTTCTCAAATTGAATCATTTGAGGGAAACAACTTTTC
TCCACTAGATTCGGTTGCCGTTCTCGGGGCTCTGCTTACTCCGGTGTCAG
TGAGAATCGGCTCTGATGGGAGACATAGCCAAGGATCTATTTTCTGGGAC
TGTTGGAGGGGCAGCACAATTAATATGTGGGCACCCATTTGATACCATCA
AGGTCAAGCTTCAAAGCCAGCCTGCTCCACTCCCTGGCCAACCTCCCAAG
TATGCTGGTGCCATGGATGCTGTCAAGCAAACCATAGCTGCCGAAGGGCC
AAGGGGCTTGTACAAAGGTATGGGAGCTCCACTAGCTA
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